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(-) Description

Title :  CGL2 IN COMPLEX WITH BLOOD GROUP H TYPE II
 
Authors :  P. J. Walser, P. W. Haebel, M. Kuenzler, U. Kues, M. Aebi, N. Ban
Date :  12 Sep 03  (Deposition) - 20 Apr 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  C,D  (2x)
Keywords :  Galectin, Lectin, Beta-Galactoside Binding Lectin, Sugar Binding, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. J. Walser, P. W. Haebel, M. Kuenzler, D. Sargent, U. Kues, M. Aebi, N. Ban
Structure And Functional Analysis Of The Fungal Galectin Cgl2
Structure V. 12 689 2004
PubMed-ID: 15062091  |  Reference-DOI: 10.1016/J.STR.2004.03.002
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GALECTIN-2
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemSACCHAROMYCES CEREVISIAE
    Expression System CommonBAKER'S YEAST
    Expression System PlasmidPYADE4
    Expression System StrainSEY 6210
    Expression System Taxid4932
    Expression System Vector TypePLASMID
    GeneCGL2
    Organism ScientificCOPRINOPSIS CINEREA
    Organism Taxid5346
    SynonymCGL2

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (2x)AB  
Biological Unit 2 (1x)  CD
Biological Unit 3 (2x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1FUC4Ligand/IonALPHA-L-FUCOSE
2GAL4Ligand/IonBETA-D-GALACTOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1FUC4Ligand/IonALPHA-L-FUCOSE
2GAL4Ligand/IonBETA-D-GALACTOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1FUC2Ligand/IonALPHA-L-FUCOSE
2GAL2Ligand/IonBETA-D-GALACTOSE
3NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 3 (3, 12)
No.NameCountTypeFull Name
1FUC4Ligand/IonALPHA-L-FUCOSE
2GAL4Ligand/IonBETA-D-GALACTOSE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:51 , ARG A:55 , ASN A:64 , TRP A:72 , GLU A:75 , NAG A:152 , FUC A:153 , HOH A:173 , HOH A:178BINDING SITE FOR RESIDUE GAL A 151
02AC2SOFTWAREARG A:55 , GLU A:75 , ARG A:77 , GAL A:151 , FUC A:153 , HOH A:211 , HOH A:231 , HOH A:235 , ASN D:47 , LEU D:67 , ILE D:116 , GLU D:118 , HOH D:168 , HOH D:205BINDING SITE FOR RESIDUE NAG A 152
03AC3SOFTWAREGAL A:151 , NAG A:152 , HOH A:182 , LEU D:67 , HOH D:215BINDING SITE FOR RESIDUE FUC A 153
04AC4SOFTWAREHIS B:51 , SER B:53 , ARG B:55 , ASN B:64 , TRP B:72 , GLU B:75 , NAG B:152 , FUC B:153 , HOH B:166 , HOH B:259BINDING SITE FOR RESIDUE GAL B 151
05AC5SOFTWAREARG B:55 , GLU B:75 , ARG B:77 , GAL B:151 , FUC B:153 , HOH B:242 , HOH B:244BINDING SITE FOR RESIDUE NAG B 152
06AC6SOFTWAREGAL B:151 , NAG B:152 , HOH B:209 , HOH B:255BINDING SITE FOR RESIDUE FUC B 153
07AC7SOFTWAREHIS C:51 , SER C:53 , ARG C:55 , ASN C:64 , TRP C:72 , GLU C:75 , NAG C:152 , FUC C:153 , HOH C:179BINDING SITE FOR RESIDUE GAL C 151
08AC8SOFTWAREARG C:55 , GLU C:75 , ARG C:77 , GAL C:151 , FUC C:153 , HOH C:191BINDING SITE FOR RESIDUE NAG C 152
09AC9SOFTWAREASP A:16 , ASN A:119 , HOH A:169 , GAL C:151 , NAG C:152 , HOH C:224BINDING SITE FOR RESIDUE FUC C 153
10BC1SOFTWAREHIS D:51 , SER D:53 , ARG D:55 , ASN D:64 , TRP D:72 , GLU D:75 , NAG D:152 , FUC D:153 , HOH D:197 , HOH D:214BINDING SITE FOR RESIDUE GAL D 151
11BC2SOFTWAREARG D:55 , GLU D:75 , ARG D:77 , GAL D:151 , FUC D:153 , HOH D:211BINDING SITE FOR RESIDUE NAG D 152
12BC3SOFTWAREGAL D:151 , NAG D:152 , HOH D:185 , HOH D:226BINDING SITE FOR RESIDUE FUC D 153

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ULD)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Pro A:86 -Pro A:87
2Ser A:134 -Pro A:135
3Pro B:86 -Pro B:87
4Ser B:134 -Pro B:135
5Pro C:86 -Pro C:87
6Ser C:134 -Pro C:135
7Pro D:86 -Pro D:87
8Ser D:134 -Pro D:135

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ULD)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.CGL2_COPCI9-141
 
 
 
  4A:9-141
B:9-141
C:9-141
D:9-141
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.CGL2_COPCI9-141
 
 
 
  4A:9-141
B:9-141
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.CGL2_COPCI9-141
 
 
 
  2-
-
C:9-141
D:9-141
Biological Unit 3 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GALECTINPS51304 Galactoside-binding lectin (galectin) domain profile.CGL2_COPCI9-141
 
 
 
  4-
-
C:9-141
D:9-141

(-) Exons   (0, 0)

(no "Exon" information available for 1ULD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:150
 aligned with CGL2_COPCI | Q9P4R8 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           CGL2_COPCI     1 MLYHLFVNNQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYAEKFRPPNPSITVIDHGDRFQIRFDYGTSIYYNKRIKENAAAIAYNAENSLFSSPVTVDVHGLLPPLPPA 150
               SCOP domains d1ulda_ A: Galectin-2                                                                                                                                  SCOP domains
               CATH domains 1uldA00 A:1-150  [code=2.60.120.200, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee...eeeeeeeee....eeeee..........eeeeee.....eeeeeeee....eeeeeee.........eeee..........eeeeee...eeeee......eeee......eeeeeeee........eeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GALECTIN  PDB: A:9-141 UniProt: 9-141                                                                                                --------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1uld A   1 MLYHLFVNNQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYAEKFRPPNPSITVIDHGDRFQIRFDYGTSIYYNKRIKENAAAIAYNAENSLFSSPVTVDVHGLLPPLPPA 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain B from PDB  Type:PROTEIN  Length:150
 aligned with CGL2_COPCI | Q9P4R8 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           CGL2_COPCI     1 MLYHLFVNNQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYAEKFRPPNPSITVIDHGDRFQIRFDYGTSIYYNKRIKENAAAIAYNAENSLFSSPVTVDVHGLLPPLPPA 150
               SCOP domains d1uldb_ B: Galectin-2                                                                                                                                  SCOP domains
               CATH domains 1uldB00 B:1-150  [code=2.60.120.200, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee...eeeeeeeee....eeeee..........eeeeee.....eeeeeeee....eeeeeee.........eeee..........eeeeee...eeeee......eeee......eeeeeeee........eeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GALECTIN  PDB: B:9-141 UniProt: 9-141                                                                                                --------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1uld B   1 MLYHLFVNNQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYAEKFRPPNPSITVIDHGDRFQIRFDYGTSIYYNKRIKENAAAIAYNAENSLFSSPVTVDVHGLLPPLPPA 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain C from PDB  Type:PROTEIN  Length:150
 aligned with CGL2_COPCI | Q9P4R8 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           CGL2_COPCI     1 MLYHLFVNNQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYAEKFRPPNPSITVIDHGDRFQIRFDYGTSIYYNKRIKENAAAIAYNAENSLFSSPVTVDVHGLLPPLPPA 150
               SCOP domains d1uldc_ C: Galectin-2                                                                                                                                  SCOP domains
               CATH domains 1uldC00 C:1-150  [code=2.60.120.200, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee...eeeeeeeee....eeeee..........eeeeeee....eeeeeeee....eeeeeee.........eeee..........eeeeee...eeeee......eeee......eeeeeee.........eeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GALECTIN  PDB: C:9-141 UniProt: 9-141                                                                                                --------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1uld C   1 MLYHLFVNNQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYAEKFRPPNPSITVIDHGDRFQIRFDYGTSIYYNKRIKENAAAIAYNAENSLFSSPVTVDVHGLLPPLPPA 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain D from PDB  Type:PROTEIN  Length:150
 aligned with CGL2_COPCI | Q9P4R8 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
           CGL2_COPCI     1 MLYHLFVNNQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYAEKFRPPNPSITVIDHGDRFQIRFDYGTSIYYNKRIKENAAAIAYNAENSLFSSPVTVDVHGLLPPLPPA 150
               SCOP domains d1uldd_ D: Galectin-2                                                                                                                                  SCOP domains
               CATH domains 1uldD00 D:1-150  [code=2.60.120.200, no name defined]                                                                                                  CATH domains
           Pfam domains (1) -------Gal-bind_lectin-1uldD01 D:8-134                                                                                                ---------------- Pfam domains (1)
           Pfam domains (2) -------Gal-bind_lectin-1uldD02 D:8-134                                                                                                ---------------- Pfam domains (2)
           Pfam domains (3) -------Gal-bind_lectin-1uldD03 D:8-134                                                                                                ---------------- Pfam domains (3)
           Pfam domains (4) -------Gal-bind_lectin-1uldD04 D:8-134                                                                                                ---------------- Pfam domains (4)
         Sec.struct. author .eeee...eeeeeeeee....eeeee..........eeeeee.....eeeeeeeehhh.eeeeeee.........eeee..........eeeeee...eeeee......eeee......eeeeeee.........eeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GALECTIN  PDB: D:9-141 UniProt: 9-141                                                                                                --------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1uld D   1 MLYHLFVNNQVKLQNDFKPESVAAIRSSAFNSKGGTTVFNFLSAGENILLHISIRPGENVIVFNSRLKNGAWGPEERIPYAEKFRPPNPSITVIDHGDRFQIRFDYGTSIYYNKRIKENAAAIAYNAENSLFSSPVTVDVHGLLPPLPPA 150
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric Unit

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (CGL2_COPCI | Q9P4R8)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0012505    endomembrane system    A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CGL2_COPCI | Q9P4R81ul9 1ulc 1ule 1ulf 1ulg 2wkk

(-) Related Entries Specified in the PDB File

1a3k MAMMALIAN HOMOLOGUE GALECTIN-3 CARBOHYDRATE BINDING DOMAIN
1bkz MAMMALIAN HOMOLOGUE GALECTIN-7
1c1f FISH HOMOLOGUE CONGERIN I
1gan AMPHIBIAN HOMOLOGUE GALECTIN-1 WITH N-ACETYLLACTOSAMINE
1is5 FISH HOMOLOGUE CONGERIN II
1lcl MAMMALIAN CHARCOT-LEYDEN PROTEIN
1qmj AVIAN HOMOLOGUE CG-16
1sla MAMMALIAN HOMOLOGUE GALECTIN-1 WITH BIANTENNARY OLIGOSACCHARIDE
1ul9 1UL9 CONTAINS THE SAME PROTEIN WITHOUT LIGAND
1ulc 1ULC CONTAINS THE SAME PROTEIN COMPLEXED WITH LACTOSE
1ule 1ULE CONTAINS THE SAME PROTEIN COMPLEXED WITH LINEAR B2 TRISACCHARIDE
1ulf 1ULF CONTAINS THE SAME PROTEIN COMPLEXED WITH BLOOD GROUP A TETRASACCHARIDE
1ulg 1ULG CONTAINS THE SAME PROTEIN COMPLEXED WITH THOMSEN- FRIEDENREICH ANTIGEN