PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1ULD
Biol. Unit 1
Info
Asym.Unit (111 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (54 KB)
Biol.Unit 3 (106 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CGL2 IN COMPLEX WITH BLOOD GROUP H TYPE II
Authors
:
P. J. Walser, P. W. Haebel, M. Kuenzler, U. Kues, M. Aebi, N. Ban
Date
:
12 Sep 03 (Deposition) - 20 Apr 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: C,D (2x)
Keywords
:
Galectin, Lectin, Beta-Galactoside Binding Lectin, Sugar Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Walser, P. W. Haebel, M. Kuenzler, D. Sargent, U. Kues, M. Aebi, N. Ban
Structure And Functional Analysis Of The Fungal Galectin Cgl2
Structure V. 12 689 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 12)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
1c: ALPHA-L-FUCOSE (FUCc)
1d: ALPHA-L-FUCOSE (FUCd)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
2
GAL
4
Ligand/Ion
BETA-D-GALACTOSE
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:51 , ARG A:55 , ASN A:64 , TRP A:72 , GLU A:75 , NAG A:152 , FUC A:153 , HOH A:173 , HOH A:178
BINDING SITE FOR RESIDUE GAL A 151
2
AC2
SOFTWARE
ARG A:55 , GLU A:75 , ARG A:77 , GAL A:151 , FUC A:153 , HOH A:211 , HOH A:231 , HOH A:235 , ASN D:47 , LEU D:67 , ILE D:116 , GLU D:118 , HOH D:168 , HOH D:205
BINDING SITE FOR RESIDUE NAG A 152
3
AC3
SOFTWARE
GAL A:151 , NAG A:152 , HOH A:182 , LEU D:67 , HOH D:215
BINDING SITE FOR RESIDUE FUC A 153
4
AC4
SOFTWARE
HIS B:51 , SER B:53 , ARG B:55 , ASN B:64 , TRP B:72 , GLU B:75 , NAG B:152 , FUC B:153 , HOH B:166 , HOH B:259
BINDING SITE FOR RESIDUE GAL B 151
5
AC5
SOFTWARE
ARG B:55 , GLU B:75 , ARG B:77 , GAL B:151 , FUC B:153 , HOH B:242 , HOH B:244
BINDING SITE FOR RESIDUE NAG B 152
6
AC6
SOFTWARE
GAL B:151 , NAG B:152 , HOH B:209 , HOH B:255
BINDING SITE FOR RESIDUE FUC B 153
7
AC9
SOFTWARE
ASP A:16 , ASN A:119 , HOH A:169 , GAL C:151 , NAG C:152 , HOH C:224
BINDING SITE FOR RESIDUE FUC C 153
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GALECTIN (A:9-141,B:9-141)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GALECTIN
PS51304
Galactoside-binding lectin (galectin) domain profile.
CGL2_COPCI
9-141
4
A:9-141
B:9-141
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ulda_ (A:)
1b: SCOP_d1uldb_ (B:)
1c: SCOP_d1uldc_ (C:)
1d: SCOP_d1uldd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Galectin (animal S-lectin)
(75)
Protein domain
:
Galectin-2
(6)
Inky cap fungus (Coprinopsis cinerea) [TaxId: 5346]
(6)
1a
d1ulda_
A:
1b
d1uldb_
B:
1c
d1uldc_
C:
1d
d1uldd_
D:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1uldA00 (A:1-150)
1b: CATH_1uldB00 (B:1-150)
1c: CATH_1uldC00 (C:1-150)
1d: CATH_1uldD00 (D:1-150)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Coprinopsis cinerea. Organism_taxid: 5346.
(6)
1a
1uldA00
A:1-150
1b
1uldB00
B:1-150
1c
1uldC00
C:1-150
1d
1uldD00
D:1-150
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Gal_bind_lectin_1uldD01 (D:8-134)
1b: PFAM_Gal_bind_lectin_1uldD02 (D:8-134)
1c: PFAM_Gal_bind_lectin_1uldD03 (D:8-134)
1d: PFAM_Gal_bind_lectin_1uldD04 (D:8-134)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Concanavalin
(293)
Family
:
Gal-bind_lectin
(60)
Coprinopsis cinerea (Inky cap fungus) (Hormographiella aspergillata)
(9)
1a
Gal-bind_lectin-1uldD01
D:8-134
1b
Gal-bind_lectin-1uldD02
D:8-134
1c
Gal-bind_lectin-1uldD03
D:8-134
1d
Gal-bind_lectin-1uldD04
D:8-134
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (107 KB)
Header - Biol.Unit 1
Biol.Unit 2 (54 KB)
Header - Biol.Unit 2
Biol.Unit 3 (106 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ULD
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
