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(-) Description

Title :  CRYSTAL STRUCTURE OF TYPE IV COLLAGEN NC1 DOMAIN FROM BOVINE LENS CAPSULE
 
Authors :  R. M. Vanacore, S. Shanmugasundararaj, D. B. Friedman, O. Bondar, B. G. Hudson, M. Sundaramoorthy
Date :  05 May 04  (Deposition) - 21 Sep 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Biol. Unit 3:  M,N,O,P,Q,R  (1x)
Biol. Unit 4:  S,T,U,V,W,X  (1x)
Keywords :  Basement Membrane, Type Iv Collagen, Nc1 Domain, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. M. Vanacore, S. Shanmugasundararaj, D. B. Friedman, O. Bondar, B. G. Hudson, M. Sundaramoorthy
The Alpha1. Alpha2 Network Of Collagen Iv. Reinforced Stabilization Of The Noncollagenous Domain-1 By Noncovalent Forces And The Absence Of Met-Lys Cross-Links
J. Biol. Chem. V. 279 44723 2004
PubMed-ID: 15299013  |  Reference-DOI: 10.1074/JBC.M406344200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TYPE IV COLLAGEN
    Chains: A, B, D, E, G, H, J, K, M, N, P, Q, S, T, V, W
    Fragment: NC1 OF ALPHA-1
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Tissue: LENS CAPSULE
 
Molecule 2 - TYPE IV COLLAGEN
    Chains: C, F, I, L, O, R, U, X
    Fragment: NC1 OF ALPHA-2
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Tissue: LENS CAPSULE

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWX
Biological Unit 1 (1x): ABCDEF                  
Biological Unit 2 (1x):       GHIJKL            
Biological Unit 3 (1x):             MNOPQR      
Biological Unit 4 (1x):                   STUVWX

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 41)

Asymmetric Unit (3, 41)
No.NameCountTypeFull Name
1CL16Ligand/IonCHLORIDE ION
2K16Ligand/IonPOTASSIUM ION
3MPD9Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2K-1Ligand/IonPOTASSIUM ION
3MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2K-1Ligand/IonPOTASSIUM ION
3MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2K-1Ligand/IonPOTASSIUM ION
3MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2K-1Ligand/IonPOTASSIUM ION
3MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (41, 41)

Asymmetric Unit (41, 41)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:189 , TYR C:63 , ASN C:65 , ALA E:186BINDING SITE FOR RESIDUE K C 5101
02AC2SOFTWAREALA B:186 , TYR D:189 , TYR F:63 , ASN F:65BINDING SITE FOR RESIDUE K D 5102
03AC3SOFTWARETYR G:189 , TYR I:63 , ASN I:65 , ALA K:186BINDING SITE FOR RESIDUE K G 5103
04AC4SOFTWAREALA H:186 , TYR J:189 , TYR L:63 , ASN L:65BINDING SITE FOR RESIDUE K L 5104
05AC5SOFTWARETYR M:189 , TYR O:63 , ASN O:65 , ALA Q:186BINDING SITE FOR RESIDUE K M 5105
06AC6SOFTWAREALA N:186 , TYR P:189 , TYR R:63 , ASN R:65BINDING SITE FOR RESIDUE K P 5106
07AC7SOFTWARETYR S:189 , TYR U:63 , ASN U:65 , ALA W:186BINDING SITE FOR RESIDUE K U 5107
08AC8SOFTWAREALA T:186 , TYR V:189 , TYR X:63 , ASN X:65BINDING SITE FOR RESIDUE K V 5108
09AC9SOFTWAREASN B:66 , HOH B:5142 , TYR C:187 , TYR F:183 , ALA F:184BINDING SITE FOR RESIDUE K B 5109
10BC1SOFTWARETYR C:183 , ALA C:184 , ASN E:66 , TYR F:187BINDING SITE FOR RESIDUE K C 5110
11BC2SOFTWAREASN H:66 , HOH H:5152 , TYR I:187 , TYR L:183 , ALA L:184BINDING SITE FOR RESIDUE K H 5111
12BC3SOFTWAREALA I:184 , ASN K:66 , HOH K:294 , TYR L:187BINDING SITE FOR RESIDUE K I 5112
13BC4SOFTWAREASN N:66 , TYR O:187 , ALA R:184BINDING SITE FOR RESIDUE K N 5113
14BC5SOFTWARETYR O:183 , ALA O:184 , ASN Q:66 , TYR R:187BINDING SITE FOR RESIDUE K O 5114
15BC6SOFTWAREASN T:66 , TYR U:187 , TYR X:183 , ALA X:184BINDING SITE FOR RESIDUE K T 5115
16BC7SOFTWARETYR U:183 , ALA U:184 , ASN W:66 , TYR X:187BINDING SITE FOR RESIDUE K U 5116
17BC8SOFTWAREALA A:74 , ARG A:76 , ASP A:78 , HOH A:5203 , HOH D:5256BINDING SITE FOR RESIDUE CL A 5201
18BC9SOFTWAREALA C:73 , ARG C:75 , ASN C:76 , ASP C:77 , HOH C:5209 , HOH C:5221BINDING SITE FOR RESIDUE CL C 5202
19CC1SOFTWAREHOH A:5246 , ALA D:74 , ARG D:76 , ASN D:77 , ASP D:78 , HOH D:5211BINDING SITE FOR RESIDUE CL D 5203
20CC2SOFTWAREALA F:73 , ARG F:75 , ASP F:77 , HOH F:5224 , HOH F:5225BINDING SITE FOR RESIDUE CL F 5204
21CC3SOFTWAREALA G:74 , ARG G:76 , ASP G:78 , GLY G:178 , HOH G:5215 , ARG J:179BINDING SITE FOR RESIDUE CL G 5205
22CC4SOFTWAREALA I:73 , ARG I:75 , ASN I:76 , ASP I:77 , HOH I:5211BINDING SITE FOR RESIDUE CL I 5206
23CC5SOFTWAREARG G:179 , ALA J:74 , ARG J:76 , ASN J:77 , ASP J:78 , GLY J:178 , HOH J:5216BINDING SITE FOR RESIDUE CL J 5207
24CC6SOFTWAREALA M:74 , ARG M:76 , ASP M:78 , GLY M:178 , HOH M:5217 , HOH P:5251BINDING SITE FOR RESIDUE CL M 5208
25CC7SOFTWAREALA L:73 , ARG L:75 , ASN L:76 , ASP L:77 , HOH L:5216 , HOH L:5229BINDING SITE FOR RESIDUE CL L 5209
26CC8SOFTWAREALA O:73 , SER O:74 , ARG O:75 , ASN O:76 , ASP O:77 , HOH O:5213 , HOH O:5232BINDING SITE FOR RESIDUE CL O 5210
27CC9SOFTWAREHOH M:5248 , ALA P:74 , ARG P:76 , ASN P:77 , ASP P:78 , GLY P:178 , HOH P:5230BINDING SITE FOR RESIDUE CL P 5211
28DC1SOFTWAREALA R:73 , ARG R:75 , ASN R:76 , ASP R:77 , HOH R:5225BINDING SITE FOR RESIDUE CL R 5212
29DC2SOFTWAREALA S:74 , ARG S:76 , ASN S:77 , ASP S:78 , GLY S:178 , HOH S:5230 , ARG V:179BINDING SITE FOR RESIDUE CL S 5213
30DC3SOFTWAREALA U:73 , ARG U:75 , ASN U:76 , ASP U:77 , HOH U:5219 , HOH U:5235BINDING SITE FOR RESIDUE CL U 5214
31DC4SOFTWAREALA V:74 , ARG V:76 , ASP V:78BINDING SITE FOR RESIDUE CL V 5215
32DC5SOFTWAREALA X:73 , ARG X:75 , ASN X:76 , ASP X:77 , HOH X:5242BINDING SITE FOR RESIDUE CL X 5216
33DC6SOFTWAREHIS A:121 , GLN A:129 , PRO A:131BINDING SITE FOR RESIDUE MPD A 5001
34DC7SOFTWAREGLY T:23 , LYS T:25 , GLU T:112BINDING SITE FOR RESIDUE MPD T 5002
35DC8SOFTWAREHIS M:121 , GLN M:129 , HOH M:5316BINDING SITE FOR RESIDUE MPD M 5003
36DC9SOFTWAREVAL S:120 , GLN S:129 , PRO S:131BINDING SITE FOR RESIDUE MPD S 5004
37EC1SOFTWAREPHE S:168 , ALA S:212 , GLY S:213 , LEU S:215 , ARG S:216 , HOH U:5285BINDING SITE FOR RESIDUE MPD S 5005
38EC2SOFTWAREVAL P:120 , GLN P:129 , LEU R:26 , TRP R:27BINDING SITE FOR RESIDUE MPD P 5006
39EC3SOFTWAREMET D:89 , MET D:93 , TYR D:185 , ALA D:186 , HOH D:5262 , PRO F:66 , GLY F:67BINDING SITE FOR RESIDUE MPD D 5007
40EC4SOFTWAREMET M:89 , MET M:93 , ALA M:186 , HOH M:5254 , GLY O:67 , ASN P:68BINDING SITE FOR RESIDUE MPD M 5008
41EC5SOFTWAREASN G:68 , MET J:89 , MET J:93 , TYR J:185 , ALA J:186 , PRO L:66 , GLY L:67BINDING SITE FOR RESIDUE MPD J 5009

(-) SS Bonds  (144, 144)

Asymmetric Unit
No.Residues
1A:20 -A:111
2A:53 -A:108
3A:65 -A:71
4A:130 -A:225
5A:164 -A:222
6A:176 -A:182
7B:20 -B:111
8B:53 -B:108
9B:65 -B:71
10B:130 -B:225
11B:164 -B:222
12B:176 -B:182
13C:19 -C:108
14C:52 -C:105
15C:64 -C:70
16C:127 -C:223
17C:161 -C:220
18C:173 -C:180
19D:20 -D:111
20D:53 -D:108
21D:65 -D:71
22D:130 -D:225
23D:164 -D:222
24D:176 -D:182
25E:20 -E:111
26E:53 -E:108
27E:65 -E:71
28E:130 -E:225
29E:164 -E:222
30E:176 -E:182
31F:19 -F:108
32F:52 -F:105
33F:64 -F:70
34F:127 -F:223
35F:161 -F:220
36F:173 -F:180
37G:20 -G:111
38G:53 -G:108
39G:65 -G:71
40G:130 -G:225
41G:164 -G:222
42G:176 -G:182
43H:20 -H:111
44H:53 -H:108
45H:65 -H:71
46H:130 -H:225
47H:164 -H:222
48H:176 -H:182
49I:19 -I:108
50I:52 -I:105
51I:64 -I:70
52I:127 -I:223
53I:161 -I:220
54I:173 -I:180
55J:20 -J:111
56J:53 -J:108
57J:65 -J:71
58J:130 -J:225
59J:164 -J:222
60J:176 -J:182
61K:20 -K:111
62K:53 -K:108
63K:65 -K:71
64K:130 -K:225
65K:164 -K:222
66K:176 -K:182
67L:19 -L:108
68L:52 -L:105
69L:64 -L:70
70L:127 -L:223
71L:161 -L:220
72L:173 -L:180
73M:20 -M:111
74M:53 -M:108
75M:65 -M:71
76M:130 -M:225
77M:164 -M:222
78M:176 -M:182
79N:20 -N:111
80N:53 -N:108
81N:65 -N:71
82N:130 -N:225
83N:164 -N:222
84N:176 -N:182
85O:19 -O:108
86O:52 -O:105
87O:64 -O:70
88O:127 -O:223
89O:161 -O:220
90O:173 -O:180
91P:20 -P:111
92P:53 -P:108
93P:65 -P:71
94P:130 -P:225
95P:164 -P:222
96P:176 -P:182
97Q:20 -Q:111
98Q:53 -Q:108
99Q:65 -Q:71
100Q:130 -Q:225
101Q:164 -Q:222
102Q:176 -Q:182
103R:19 -R:108
104R:52 -R:105
105R:64 -R:70
106R:127 -R:223
107R:161 -R:220
108R:173 -R:180
109S:20 -S:111
110S:53 -S:108
111S:65 -S:71
112S:130 -S:225
113S:164 -S:222
114S:176 -S:182
115T:20 -T:111
116T:53 -T:108
117T:65 -T:71
118T:130 -T:225
119T:164 -T:222
120T:176 -T:182
121U:19 -U:108
122U:52 -U:105
123U:64 -U:70
124U:127 -U:223
125U:161 -U:220
126U:173 -U:180
127V:20 -V:111
128V:53 -V:108
129V:65 -V:71
130V:130 -V:225
131V:164 -V:222
132V:176 -V:182
133W:20 -W:111
134W:53 -W:108
135W:65 -W:71
136W:130 -W:225
137W:164 -W:222
138W:176 -W:182
139X:19 -X:108
140X:52 -X:105
141X:64 -X:70
142X:127 -X:223
143X:161 -X:220
144X:173 -X:180

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1T60)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1T60)

(-) PROSITE Motifs  (1, 21)

Asymmetric Unit (1, 21)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NC1_IVPS51403 Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile.CO4A2_BOVIN4-227
 
 
 
 
 		  6C:4-225
I:4-226
O:4-226
R:4-226
U:4-226
X:4-226
CO4A1_BOVIN5-229
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  15A:5-227
B:5-228
D:5-227
E:5-228
G:5-229
H:5-229
J:5-227
K:5-227
M:5-227
P:5-228
Q:5-227
S:5-228
T:5-229
V:5-227
W:5-227
Biological Unit 1 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NC1_IVPS51403 Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile.CO4A2_BOVIN4-227
 
 
 
 
 		  1C:4-225
-
-
-
-
-
CO4A1_BOVIN5-229
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  4A:5-227
B:5-228
D:5-227
E:5-228
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 2 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NC1_IVPS51403 Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile.CO4A2_BOVIN4-227
 
 
 
 
 		  1-
I:4-226
-
-
-
-
CO4A1_BOVIN5-229
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
G:5-229
H:5-229
J:5-227
K:5-227
-
-
-
-
-
-
-
Biological Unit 3 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NC1_IVPS51403 Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile.CO4A2_BOVIN4-227
 
 
 
 
 		  2-
-
O:4-226
R:4-226
-
-
CO4A1_BOVIN5-229
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  3-
-
-
-
-
-
-
-
M:5-227
P:5-228
Q:5-227
-
-
-
-
Biological Unit 4 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NC1_IVPS51403 Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile.CO4A2_BOVIN4-227
 
 
 
 
 		  2-
-
-
-
U:4-226
X:4-226
CO4A1_BOVIN5-229
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  4-
-
-
-
-
-
-
-
-
-
-
S:5-228
T:5-229
V:5-227
W:5-227

(-) Exons   (0, 0)

(no "Exon" information available for 1T60)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:223
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:223
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   
          CO4A1_BOVIN     5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains -d1t60a1 A:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60a2 A:115-225 Noncollagenous (NC1) domain of collagen IV                                                   -- SCOP domains
               CATH domains 1t60A00 A:5-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee.....eee.....eeeee.............hhhhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee....ee.....eeeee...hhhhh......eee....hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) NC1_IV  PDB: A:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 A   5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   


Chain B from PDB  Type:PROTEIN  Length:225
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:225
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223     
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
               SCOP domains --d1t60b1 B:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60b2 B:115-225 Noncollagenous (NC1) domain of collagen IV                                                   --- SCOP domains
               CATH domains 1t60B00 B:4-228 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee..ee...eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee............eeeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee..............eee....hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: B:5-228 UniProt: 5-229                                                                                                                                                                                              PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 B   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223     


Chain C from PDB  Type:PROTEIN  Length:223
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
          CO4A2_BOVIN     3 IGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMK 225
               SCOP domains d1t60c1 C:3-114 Noncollagenous (NC1) domain of collagen IV                                                      d1t60c2 C:115-225 Noncollagenous (NC1) domain of collagen IV                                                    SCOP domains
               CATH domains 1t60C00 C:3-225 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.....eee....hhh.ee.......eeeee....eee.....eeeee.......ee.....eee...hhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -NC1_IV  PDB: C:4-225 UniProt: 4-227                                                                                                                                                                                            PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 C   3 IGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMK 225
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   


Chain D from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains --d1t60d1 D:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60d2 D:115-225 Noncollagenous (NC1) domain of collagen IV                                                   -- SCOP domains
               CATH domains 1t60D00 D:4-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee....eeee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee...hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: D:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 D   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    


Chain E from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224    
          CO4A1_BOVIN     5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
               SCOP domains -d1t60e1 E:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60e2 E:115-225 Noncollagenous (NC1) domain of collagen IV                                                   --- SCOP domains
               CATH domains 1t60E00 E:5-228 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee....eeee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee..hhhhhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) NC1_IV  PDB: E:5-228 UniProt: 5-229                                                                                                                                                                                              PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 E   5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224    


Chain F from PDB  Type:PROTEIN  Length:222
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:222
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224  
          CO4A2_BOVIN     5 YLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1t60f1 F:5-114 Noncollagenous (NC1) domain of collagen IV                                                    d1t60f2 F:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1t60F00 F:5-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..............eeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeee....eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeee.hhh.eee.....eeeee..............eeee...hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE NC1_IV  PDB: - UniProt: 4-227                                                                                                                                                                                                  PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t60 F   5 YLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224  


Chain G from PDB  Type:PROTEIN  Length:228
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:228
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221        
          CO4A1_BOVIN     2 VDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
               SCOP domains ----d1t60g1 G:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60g2 G:115-225 Noncollagenous (NC1) domain of collagen IV                                                   ---- SCOP domains
               CATH domains 1t60G00 G:2-229 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeeee....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee............eeeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee..hhhhhh.eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ---NC1_IV  PDB: G:5-229 UniProt: 5-229                                                                                                                                                                                               PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t60 G   2 VDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221        


Chain H from PDB  Type:PROTEIN  Length:227
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:227
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       
          CO4A1_BOVIN     3 DHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
               SCOP domains ---d1t60h1 H:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60h2 H:115-225 Noncollagenous (NC1) domain of collagen IV                                                   ---- SCOP domains
               CATH domains 1t60H00 H:3-229 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eee..........eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --NC1_IV  PDB: H:5-229 UniProt: 5-229                                                                                                                                                                                               PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 H   3 DHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       


Chain I from PDB  Type:PROTEIN  Length:225
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:225
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     
          CO4A2_BOVIN     2 SIGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1t60i1 I:2-114 Noncollagenous (NC1) domain of collagen IV                                                       d1t60i2 I:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1t60I00 I:2-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..............eeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeee....eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeeee....eee.....eeeee..............eee....hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --NC1_IV  PDB: I:4-226 UniProt: 4-227                                                                                                                                                                                             PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 I   2 SIGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     


Chain J from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains --d1t60j1 J:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60j2 J:115-225 Noncollagenous (NC1) domain of collagen IV                                                   -- SCOP domains
               CATH domains 1t60J00 J:4-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee..hhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: J:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 J   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    


Chain K from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains --d1t60k1 K:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60k2 K:115-225 Noncollagenous (NC1) domain of collagen IV                                                   -- SCOP domains
               CATH domains 1t60K00 K:4-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee..ee...eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee.........eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: K:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 K   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    


Chain L from PDB  Type:PROTEIN  Length:221
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:221
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225 
          CO4A2_BOVIN     6 LLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1t60l1 L:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60l2 L:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1t60L00 L:6-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..............eeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeee.....eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeee.hhh.eee.....eeeee.......ee.....eee....hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE NC1_IV  PDB: - UniProt: 4-227                                                                                                                                                                                                 PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 L   6 LLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225 


Chain M from PDB  Type:PROTEIN  Length:223
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:223
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   
          CO4A1_BOVIN     5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains -d1t60m1 M:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60m2 M:115-225 Noncollagenous (NC1) domain of collagen IV                                                   -- SCOP domains
               CATH domains 1t60M00 M:5-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eee..........eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) NC1_IV  PDB: M:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 M   5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   


Chain N from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225    
          CO4A1_BOVIN     6 FLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
               SCOP domains d1t60n1 N:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60n2 N:115-225 Noncollagenous (NC1) domain of collagen IV                                                   ---- SCOP domains
               CATH domains 1t60N00 N:6-229 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee....eeee.....eeeee............ee.hhhhhhh.eeeeee....eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee..hhhhhh.eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) NC1_IV  PDB: - UniProt: 5-229                                                                                                                                                                                                    PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 N   6 FLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225    


Chain O from PDB  Type:PROTEIN  Length:224
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:224
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
          CO4A2_BOVIN     3 IGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1t60o1 O:3-114 Noncollagenous (NC1) domain of collagen IV                                                      d1t60o2 O:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1t60O00 O:3-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..............eeeeeeeeeeee....eee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeeee...eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeeee....eee.....eeeee..............eeeehhhhhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -NC1_IV  PDB: O:4-226 UniProt: 4-227                                                                                                                                                                                             PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 O   3 IGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    


Chain P from PDB  Type:PROTEIN  Length:225
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:225
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223     
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
               SCOP domains --d1t60p1 P:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60p2 P:115-225 Noncollagenous (NC1) domain of collagen IV                                                   --- SCOP domains
               CATH domains 1t60P00 P:4-228 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eee...hhhhhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: P:5-228 UniProt: 5-229                                                                                                                                                                                              PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 P   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223     


Chain Q from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains --d1t60q1 Q:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60q2 Q:115-225 Noncollagenous (NC1) domain of collagen IV                                                   -- SCOP domains
               CATH domains 1t60Q00 Q:4-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee..ee...eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eee....hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: Q:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 Q   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    


Chain R from PDB  Type:PROTEIN  Length:224
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:224
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
          CO4A2_BOVIN     3 IGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1t60r1 R:3-114 Noncollagenous (NC1) domain of collagen IV                                                      d1t60r2 R:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1t60R00 R:3-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeeee...eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeeee....eee.....eeeee.......ee.....eee....hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -NC1_IV  PDB: R:4-226 UniProt: 4-227                                                                                                                                                                                             PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 R   3 IGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    


Chain S from PDB  Type:PROTEIN  Length:225
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:225
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223     
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
               SCOP domains --d1t60s1 S:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60s2 S:115-225 Noncollagenous (NC1) domain of collagen IV                                                   --- SCOP domains
               CATH domains 1t60S00 S:4-228 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee............eeeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee..............eee...hhhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: S:5-228 UniProt: 5-229                                                                                                                                                                                              PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 S   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223     


Chain T from PDB  Type:PROTEIN  Length:227
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:227
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       
          CO4A1_BOVIN     3 DHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
               SCOP domains ---d1t60t1 T:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60t2 T:115-225 Noncollagenous (NC1) domain of collagen IV                                                   ---- SCOP domains
               CATH domains 1t60T00 T:3-229 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eee...hhhhhh.eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) --NC1_IV  PDB: T:5-229 UniProt: 5-229                                                                                                                                                                                               PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 T   3 DHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       


Chain U from PDB  Type:PROTEIN  Length:224
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:224
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
          CO4A2_BOVIN     3 IGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1t60u1 U:3-114 Noncollagenous (NC1) domain of collagen IV                                                      d1t60u2 U:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1t60U00 U:3-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..............eeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeee....eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeeee....eee.....eeeee..............eee....hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -NC1_IV  PDB: U:4-226 UniProt: 4-227                                                                                                                                                                                             PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 U   3 IGYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    


Chain V from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains --d1t60v1 V:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60v2 V:115-225 Noncollagenous (NC1) domain of collagen IV                                                   -- SCOP domains
               CATH domains 1t60V00 V:4-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee....eeee.....eeeee.............hhhhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee....ee.....eeeee...hhhhh......eeee.........eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: V:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 V   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    


Chain W from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains --d1t60w1 W:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1t60w2 W:115-225 Noncollagenous (NC1) domain of collagen IV                                                   -- SCOP domains
               CATH domains 1t60W00 W:4-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee..ee...eeee....eeee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee..hhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: W:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 W   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    


Chain X from PDB  Type:PROTEIN  Length:223
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:223
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223   
          CO4A2_BOVIN     4 GYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1t60x1 X:4-114 Noncollagenous (NC1) domain of collagen IV                                                     d1t60x2 X:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1t60X00 X:4-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..............eeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeee....eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeeee....eee.....eeeee.......ee.....eeee...hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE NC1_IV  PDB: X:4-226 UniProt: 4-227                                                                                                                                                                                             PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t60 X   4 GYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 48)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: C-type lectin-like (322)
(-)
Superfamily: C-type lectin-like (322)
(-)
Family: Noncollagenous (NC1) domain of collagen IV (4)
(-)
Protein domain: Noncollagenous (NC1) domain of collagen IV (4)
(-)
Cow (Bos taurus) [TaxId: 9913] (3)
1ad1t60a1A:6-114
1bd1t60a2A:115-225
1cd1t60b1B:6-114
1dd1t60b2B:115-225
1ed1t60c1C:3-114
1fd1t60c2C:115-225
1gd1t60d1D:6-114
1hd1t60d2D:115-225
1id1t60e1E:6-114
1jd1t60e2E:115-225
1kd1t60f1F:5-114
1ld1t60f2F:115-226
1md1t60g1G:6-114
1nd1t60g2G:115-225
1od1t60h1H:6-114
1pd1t60h2H:115-225
1qd1t60i1I:2-114
1rd1t60i2I:115-226
1sd1t60j1J:6-114
1td1t60j2J:115-225
1ud1t60k1K:6-114
1vd1t60k2K:115-225
1wd1t60l1L:6-114
1xd1t60l2L:115-226
1yd1t60m1M:6-114
1zd1t60m2M:115-225
1aad1t60n1N:6-114
1abd1t60n2N:115-225
1acd1t60o1O:3-114
1add1t60o2O:115-226
1aed1t60p1P:6-114
1afd1t60p2P:115-225
1agd1t60q1Q:6-114
1ahd1t60q2Q:115-225
1aid1t60r1R:3-114
1ajd1t60r2R:115-226
1akd1t60s1S:6-114
1ald1t60s2S:115-225
1amd1t60t1T:6-114
1and1t60t2T:115-225
1aod1t60u1U:3-114
1apd1t60u2U:115-226
1aqd1t60v1V:6-114
1ard1t60v2V:115-225
1asd1t60w1W:6-114
1atd1t60w2W:115-225
1aud1t60x1X:4-114
1avd1t60x2X:115-226

(-) CATH Domains  (1, 24)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Beta Complex (381)
(-)
Topology: Noncollagenous (NC1) domain of collagen IV (4)
(-)
Homologous Superfamily: Noncollagenous (NC1) domain of collagen IV (4)
(-)
Cattle (Bos taurus) (3)
1a1t60D00D:4-227
1b1t60E00E:5-228
1c1t60B00B:4-228
1d1t60P00P:4-228
1e1t60S00S:4-228
1f1t60A00A:5-227
1g1t60M00M:5-227
1h1t60H00H:3-229
1i1t60T00T:3-229
1j1t60G00G:2-229
1k1t60J00J:4-227
1l1t60O00O:3-226
1m1t60R00R:3-226
1n1t60K00K:4-227
1o1t60U00U:3-226
1p1t60I00I:2-226
1q1t60C00C:3-225
1r1t60X00X:4-226
1s1t60F00F:5-226
1t1t60L00L:6-226
1u1t60N00N:6-229
1v1t60Q00Q:4-227
1w1t60V00V:4-227
1x1t60W00W:4-227

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1T60)

(-) Gene Ontology  (5, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,D,E,G,H,J,K,M,N,P,Q,S,T,V,W   (CO4A1_BOVIN | Q7SIB2)
molecular function
    GO:0005201    extracellular matrix structural constituent    The action of a molecule that contributes to the structural integrity of the extracellular matrix.
cellular component
    GO:0005604    basement membrane    A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

Chain C,F,I,L,O,R,U,X   (CO4A2_BOVIN | Q7SIB3)
molecular function
    GO:0005201    extracellular matrix structural constituent    The action of a molecule that contributes to the structural integrity of the extracellular matrix.
cellular component
    GO:0005604    basement membrane    A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CO4A1_BOVIN | Q7SIB2: 1m3d 1t61
        CO4A2_BOVIN | Q7SIB3: 1m3d 1t61

(-) Related Entries Specified in the PDB File

1li1 THE 1.9-A CRYSTAL STRUCTURE OF THE NONCOLLAGENOUS (NC1) DOMAIN OF HUMAN PLACENTA COLLAGEN IV SHOWS STABILIZATION VIA A NOVEL TYPE OF COVALENT MET-LYS CROSS-LINK1
1m3d STRUCTURE OF TYPE IV COLLAGEN NC1 DOMAINS
1t61 CRYSTAL STRUCTURE OF TYPE IV COLLAGEN NC1 DOMAIN FROM BOVINE LENS CAPSULE