1M3D - JenaLib

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Asymmetric Unit (Jmol Viewer)

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF TYPE IV COLLAGEN NC1 DOMAINS

Authors :   M. Sundaramoorthy, M. Meiyappan, P. Todd, B. G. Hudson

Date :   27 Jun 02 (Deposition) - 07 Jan 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F  (1x)
Biol. Unit 2: G,H,I,J,K,L  (1x)

Keywords :   Basement Membrane, Type Iv Collagen, Nc1 Domain, Network Assembly, 3D Domain Swapping, Br-Mad, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Sundaramoorthy, M. Meiyappan, P. Todd, B. G. Hudson
Crystal Structure Of Nc1 Domains. Structural Basis For Type Iv Collagen Assembly In Basement Membranes
J. Biol. Chem. V. 277 31142 2002
PubMed-ID: 11970952 | Reference-DOI: 10.1074/JBC.M201740200

Molecule 1 - TYPE IV COLLAGEN NONCOLLAGENOUS DOMAIN- ALPHA1
	Chains	:	A, B, D, E, G, H, J, K
	Fragment	:	NC1 DOMAIN (RESIDUES 1-229)
	Organism Common	:	CATTLE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Other Details	:	BOVINE EYE LENS CAPSULE

Molecule 2 - TYPE IV COLLAGEN NONCOLLAGENOUS DOMAIN- ALPHA2
	Chains	:	C, F, I, L
	Fragment	:	NC1 DOMAIN (RESIDUES 1-227)
	Organism Common	:	CATTLE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Other Details	:	BOVINE EYE LENS CAPSULE

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A	B	C	D	E	F
Biological Unit 2 (1x)	:							G	H	I	J	K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 48)

No.	Name	Count	Type	Full Name
1	BR	36	Ligand/Ion	BROMIDE ION
2	GOL	8	Ligand/Ion	GLYCEROL
3	LU	4	Ligand/Ion	LUTETIUM (III) ION

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	BR	-1	Ligand/Ion	BROMIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	LU	-1	Ligand/Ion	LUTETIUM (III) ION

Biological Unit 2 (1, 4)

No.	Name	Count	Type	Full Name
1	BR	-1	Ligand/Ion	BROMIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	LU	-1	Ligand/Ion	LUTETIUM (III) ION

Asymmetric Unit (48, 48)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP C:148 , GLU C:149 , HOH C:3063 , ASP F:148 , HOH F:3127	BINDING SITE FOR RESIDUE LU C 2001
02	AC2	SOFTWARE	HOH B:4078 , ASP C:148 , ASP F:148 , GLU F:149 , HOH F:3067	BINDING SITE FOR RESIDUE LU F 2002
03	AC3	SOFTWARE	ASP I:148 , GLU I:149 , HOH I:3038 , ASP L:148 , HOH L:3116	BINDING SITE FOR RESIDUE LU I 2003
04	AC4	SOFTWARE	HOH I:3110 , ASP L:148 , GLU L:149 , HOH L:3046	BINDING SITE FOR RESIDUE LU L 2004
05	AC5	SOFTWARE	ASN A:66 , TYR B:189 , ALA D:186	BINDING SITE FOR RESIDUE BR A 3001
06	AC6	SOFTWARE	ALA A:186 , ASN D:66 , TYR E:189	BINDING SITE FOR RESIDUE BR A 3002
07	AC7	SOFTWARE	ALA E:74 , ARG E:76 , ASP E:78 , GLY E:178	BINDING SITE FOR RESIDUE BR E 3003
08	AC8	SOFTWARE	ARG A:179 , ALA D:74 , ARG D:76 , ASP D:78 , GLY D:178	BINDING SITE FOR RESIDUE BR A 3004
09	AC9	SOFTWARE	ALA A:74 , ARG A:76 , ASP A:78 , GLY A:178 , ARG D:179	BINDING SITE FOR RESIDUE BR A 3005
10	BC1	SOFTWARE	ALA H:74 , ARG H:76 , ASP H:78 , GLY H:178	BINDING SITE FOR RESIDUE BR H 3006
11	BC2	SOFTWARE	ALA C:73 , ARG C:75 , ASP C:77 , HOH C:3064	BINDING SITE FOR RESIDUE BR C 3007
12	BC3	SOFTWARE	ARG G:179 , ALA J:74 , ARG J:76 , ASP J:78 , GLY J:178	BINDING SITE FOR RESIDUE BR J 3008
13	BC4	SOFTWARE	ALA K:74 , ARG K:76 , ASP K:78 , GLY K:178	BINDING SITE FOR RESIDUE BR K 3009
14	BC5	SOFTWARE	ALA L:73 , ARG L:75 , ASP L:77 , HOH L:3066	BINDING SITE FOR RESIDUE BR L 3010
15	BC6	SOFTWARE	ASN G:66 , TYR H:189 , ALA J:186	BINDING SITE FOR RESIDUE BR H 3011
16	BC7	SOFTWARE	ALA B:74 , ARG B:76 , ASP B:78 , GLY B:178	BINDING SITE FOR RESIDUE BR B 3012
17	BC8	SOFTWARE	HOH B:4010 , ALA F:73 , ARG F:75 , ASP F:77 , HOH F:3053	BINDING SITE FOR RESIDUE BR F 3013
18	BC9	SOFTWARE	ALA I:73 , ARG I:75 , ASP I:77 , HOH I:3052	BINDING SITE FOR RESIDUE BR I 3014
19	CC1	SOFTWARE	ALA G:186 , ASN J:66 , TYR K:189	BINDING SITE FOR RESIDUE BR G 3015
20	CC2	SOFTWARE	ALA G:74 , ARG G:76 , ASP G:78 , ARG J:179	BINDING SITE FOR RESIDUE BR G 3016
21	CC3	SOFTWARE	GLY L:211 , ILE L:213 , ARG L:214	BINDING SITE FOR RESIDUE BR L 3017
22	CC4	SOFTWARE	TYR A:189 , TYR C:63 , ASN C:65 , TYR C:71 , ALA E:186	BINDING SITE FOR RESIDUE BR C 3018
23	CC5	SOFTWARE	ALA C:184 , ASN E:66 , TYR F:187	BINDING SITE FOR RESIDUE BR C 3019
24	CC6	SOFTWARE	ASN H:66 , TYR I:187 , TYR L:183 , ALA L:184	BINDING SITE FOR RESIDUE BR H 3020
25	CC7	SOFTWARE	ASN B:66 , TYR C:187 , ALA F:184	BINDING SITE FOR RESIDUE BR B 3021
26	CC8	SOFTWARE	ALA B:186 , TYR D:189 , TYR F:63 , ASN F:65	BINDING SITE FOR RESIDUE BR F 3022
27	CC9	SOFTWARE	TYR G:189 , TYR I:63 , ASN I:65 , ALA K:186	BINDING SITE FOR RESIDUE BR I 3023
28	DC1	SOFTWARE	ALA I:184 , ASN K:66 , TYR L:187	BINDING SITE FOR RESIDUE BR I 3024
29	DC2	SOFTWARE	ALA H:186 , TYR J:189 , TYR L:63 , ASN L:65	BINDING SITE FOR RESIDUE BR L 3025
30	DC3	SOFTWARE	ARG B:55	BINDING SITE FOR RESIDUE BR B 3026
31	DC4	SOFTWARE	ARG K:55 , HOH L:3098	BINDING SITE FOR RESIDUE BR K 3027
32	DC5	SOFTWARE	PHE B:168 , ARG B:216 , HOH B:4074	BINDING SITE FOR RESIDUE BR B 3028
33	DC6	SOFTWARE	GLY C:211 , ILE C:213 , ARG C:214	BINDING SITE FOR RESIDUE BR C 3029
34	DC7	SOFTWARE	GLY D:213 , LEU D:215 , ARG D:216	BINDING SITE FOR RESIDUE BR D 3030
35	DC8	SOFTWARE	GLY G:213 , LEU G:215 , ARG G:216	BINDING SITE FOR RESIDUE BR G 3031
36	DC9	SOFTWARE	GLY J:213 , LEU J:215 , ARG J:216	BINDING SITE FOR RESIDUE BR J 3032
37	EC1	SOFTWARE	GLY K:213 , GLU K:214 , LEU K:215 , ARG K:216	BINDING SITE FOR RESIDUE BR K 3033
38	EC2	SOFTWARE	GLY B:213 , GLU B:214 , LEU B:215 , ARG B:216	BINDING SITE FOR RESIDUE BR B 3034
39	EC3	SOFTWARE	GLY H:213 , GLU H:214 , LEU H:215 , ARG H:216	BINDING SITE FOR RESIDUE BR H 3035
40	EC4	SOFTWARE	GLY E:213 , LEU E:215 , ARG E:216	BINDING SITE FOR RESIDUE BR E 3036
41	EC5	SOFTWARE	ALA A:194 , THR A:195 , SER A:208 , HIS A:218 , LEU C:62 , TYR C:72	BINDING SITE FOR RESIDUE GOL A 4001
42	EC6	SOFTWARE	LEU A:63 , PHE A:73 , ALA B:194 , THR B:195 , HIS B:218	BINDING SITE FOR RESIDUE GOL B 4002
43	EC7	SOFTWARE	THR D:195 , HIS D:218 , LEU F:62 , TYR F:72	BINDING SITE FOR RESIDUE GOL D 4003
44	EC8	SOFTWARE	LEU D:63 , PHE D:73 , ALA E:194 , THR E:195 , SER E:208 , HIS E:218	BINDING SITE FOR RESIDUE GOL E 4004
45	EC9	SOFTWARE	ALA G:194 , THR G:195 , HIS G:218 , LEU I:62 , TYR I:72	BINDING SITE FOR RESIDUE GOL G 4005
46	FC1	SOFTWARE	LEU G:63 , PHE G:73 , ALA H:194 , THR H:195 , SER H:208 , HIS H:218	BINDING SITE FOR RESIDUE GOL H 4006
47	FC2	SOFTWARE	ALA J:194 , THR J:195 , HIS J:218 , HOH J:4099 , LEU L:62 , TYR L:72	BINDING SITE FOR RESIDUE GOL J 4007
48	FC3	SOFTWARE	LEU J:63 , PHE J:73 , ALA K:194 , THR K:195 , HIS K:218	BINDING SITE FOR RESIDUE GOL K 4008

Asymmetric Unit

No.	Residues
1	A:20	-	A:111
2	A:53	-	A:108
3	A:65	-	A:71
4	A:130	-	A:225
5	A:164	-	A:222
6	A:176	-	A:182
7	B:20	-	B:111
8	B:53	-	B:108
9	B:65	-	B:71
10	B:130	-	B:225
11	B:164	-	B:222
12	B:176	-	B:182
13	C:19	-	C:108
14	C:52	-	C:105
15	C:64	-	C:70
16	C:127	-	C:223
17	C:161	-	C:220
18	C:173	-	C:180
19	D:20	-	D:111
20	D:53	-	D:108
21	D:65	-	D:71
22	D:130	-	D:225
23	D:164	-	D:222
24	D:176	-	D:182
25	E:20	-	E:111
26	E:53	-	E:108
27	E:65	-	E:71
28	E:130	-	E:225
29	E:164	-	E:222
30	E:176	-	E:182
31	F:19	-	F:108
32	F:52	-	F:105
33	F:64	-	F:70
34	F:127	-	F:223
35	F:161	-	F:220
36	F:173	-	F:180
37	G:20	-	G:111
38	G:53	-	G:108
39	G:65	-	G:71
40	G:130	-	G:225
41	G:164	-	G:222
42	G:176	-	G:182
43	H:20	-	H:111
44	H:53	-	H:108
45	H:65	-	H:71
46	H:130	-	H:225
47	H:164	-	H:222
48	H:176	-	H:182
49	I:19	-	I:108
50	I:52	-	I:105
51	I:64	-	I:70
52	I:127	-	I:223
53	I:161	-	I:220
54	I:173	-	I:180
55	J:20	-	J:111
56	J:53	-	J:108
57	J:65	-	J:71
58	J:130	-	J:225
59	J:164	-	J:222
60	J:176	-	J:182
61	K:20	-	K:111
62	K:53	-	K:108
63	K:65	-	K:71
64	K:130	-	K:225
65	K:164	-	K:222
66	K:176	-	K:182
67	L:19	-	L:108
68	L:52	-	L:105
69	L:64	-	L:70
70	L:127	-	L:223
71	L:161	-	L:220
72	L:173	-	L:180

(no "Cis Peptide Bond" information available for 1M3D)

(no "SAP(SNP)/Variant" information available for 1M3D)

Asymmetric Unit (1, 7)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NC1_IV	PS51403	Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile.	CO4A2_BOVIN	4-227	1	F:4-226
1	NC1_IV	PS51403		CO4A1_BOVIN	5-229	6	A:5-227 D:5-228 E:5-227 G:5-228 H:5-227 J:5-227

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NC1_IV	PS51403	Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile.	CO4A2_BOVIN	4-227	1	F:4-226
1	NC1_IV	PS51403		CO4A1_BOVIN	5-229	3	A:5-227 D:5-228 E:5-227 - - -

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NC1_IV	PS51403	Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile.	CO4A2_BOVIN	4-227	0	-
1	NC1_IV	PS51403		CO4A1_BOVIN	5-229	3	- - - G:5-228 H:5-227 J:5-227

(no "Exon" information available for 1M3D)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:223
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:223
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   
          CO4A1_BOVIN     5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains d1m3da1 A:5-114 Noncollagenous (NC1) domain of collagen IV                                                    d1m3da2 A:115-227 Noncollagenous (NC1) domain of collagen IV                                                      SCOP domains
               CATH domains 1m3dA00 A:5-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee....eeee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee...hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) NC1_IV  PDB: A:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m3d A   5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224

Chain B from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225    
          CO4A1_BOVIN     6 FLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
               SCOP domains d1m3db1 B:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1m3db2 B:115-229 Noncollagenous (NC1) domain of collagen IV                                                        SCOP domains
               CATH domains 1m3dB00 B:6-229 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.............eeeeeeeeeeeeee..eeee....hhh.ee..ee...eeee.....eee.....eeeee............ee.hhhhhhh.eeeeee....eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee...hhhhh.eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) NC1_IV  PDB: - UniProt: 5-229                                                                                                                                                                                                    PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m3d B   6 FLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225

Chain C from PDB  Type:PROTEIN  Length:222
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:222
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224  
          CO4A2_BOVIN     5 YLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1m3dc1 C:5-114 Noncollagenous (NC1) domain of collagen IV                                                    d1m3dc2 C:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1m3dC00 C:5-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeee....eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeee.hhh.eee.....eeeee.......ee.....eee....hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE NC1_IV  PDB: - UniProt: 4-227                                                                                                                                                                                                  PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1m3d C   5 YLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224

Chain D from PDB  Type:PROTEIN  Length:225
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:225
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223     
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
               SCOP domains d1m3dd1 D:4-114 Noncollagenous (NC1) domain of collagen IV                                                     d1m3dd2 D:115-228 Noncollagenous (NC1) domain of collagen IV                                                       SCOP domains
               CATH domains 1m3dD00 D:4-228 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee............eeeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eee....hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: D:5-228 UniProt: 5-229                                                                                                                                                                                              PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m3d D   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain E from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains d1m3de1 E:4-114 Noncollagenous (NC1) domain of collagen IV                                                     d1m3de2 E:115-227 Noncollagenous (NC1) domain of collagen IV                                                      SCOP domains
               CATH domains 1m3dE00 E:4-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee..ee...eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eee....hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: E:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m3d E   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain F from PDB  Type:PROTEIN  Length:223
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:223
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223   
          CO4A2_BOVIN     4 GYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1m3df1 F:4-114 Noncollagenous (NC1) domain of collagen IV                                                     d1m3df2 F:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1m3dF00 F:4-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..............eeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeeee...eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeee.hhh.eee.....eeeee.......ee.....eee....hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE NC1_IV  PDB: F:4-226 UniProt: 4-227                                                                                                                                                                                             PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m3d F   4 GYLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain G from PDB  Type:PROTEIN  Length:225
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:225
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223     
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
               SCOP domains d1m3dg1 G:4-114 Noncollagenous (NC1) domain of collagen IV                                                     d1m3dg2 G:115-228 Noncollagenous (NC1) domain of collagen IV                                                       SCOP domains
               CATH domains 1m3dG00 G:4-228 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee....eeee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee............eeeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee...hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: G:5-228 UniProt: 5-229                                                                                                                                                                                              PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m3d G   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRR 228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain H from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    
          CO4A1_BOVIN     4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains d1m3dh1 H:4-114 Noncollagenous (NC1) domain of collagen IV                                                     d1m3dh2 H:115-227 Noncollagenous (NC1) domain of collagen IV                                                      SCOP domains
               CATH domains 1m3dH00 H:4-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee..ee...eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee...hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -NC1_IV  PDB: H:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m3d H   4 HGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223

Chain I from PDB  Type:PROTEIN  Length:222
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:222
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224  
          CO4A2_BOVIN     5 YLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1m3di1 I:5-114 Noncollagenous (NC1) domain of collagen IV                                                    d1m3di2 I:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1m3dI00 I:5-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..............eeeeeeeeeeeee..eeee....hhh.ee.......eeeee...eeee.....eeeee..........ee.hhhhhhh.eeeeee....eeeee............eeeeeeeeeeeeee.....eee....hhh.ee.......eeee.hhh.eee.....eeeee.......ee.....eee...hhhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE NC1_IV  PDB: - UniProt: 4-227                                                                                                                                                                                                  PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1m3d I   5 YLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224

Chain J from PDB  Type:PROTEIN  Length:223
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:223
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224   
          CO4A1_BOVIN     5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
               SCOP domains d1m3dj1 J:5-114 Noncollagenous (NC1) domain of collagen IV                                                    d1m3dj2 J:115-227 Noncollagenous (NC1) domain of collagen IV                                                      SCOP domains
               CATH domains 1m3dJ00 J:5-227 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.............eeeeeeeeeeeeee..eeee....hhh.ee.......eeee.....eee.....eeeee............ee.hhhhhhh.eeeeeee...eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eeee...hhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) NC1_IV  PDB: J:5-227 UniProt: 5-229                                                                                                                                                                                             PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m3d J   5 GFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMR 227
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224

Chain K from PDB  Type:PROTEIN  Length:224
 aligned with CO4A1_BOVIN | Q7SIB2 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:224
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225    
          CO4A1_BOVIN     6 FLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
               SCOP domains d1m3dk1 K:6-114 Noncollagenous (NC1) domain of collagen IV                                                   d1m3dk2 K:115-229 Noncollagenous (NC1) domain of collagen IV                                                        SCOP domains
               CATH domains 1m3dK00 K:6-229 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                       CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------C4-1m3dK01 K:115-228                                                                                              - Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------C4-1m3dK02 K:115-228                                                                                              - Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------C4-1m3dK03 K:115-228                                                                                              - Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------C4-1m3dK04 K:115-228                                                                                              - Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------------------------------------------C4-1m3dK05 K:115-228                                                                                              - Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------------------------------------------C4-1m3dK06 K:115-228                                                                                              - Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------------------------------------------------C4-1m3dK07 K:115-228                                                                                              - Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------------------------------------------------C4-1m3dK08 K:115-228                                                                                              - Pfam domains (8)
           Pfam domains (9) -------------------------------------------------------------------------------------------------------------C4-1m3dK09 K:115-228                                                                                              - Pfam domains (9)
          Pfam domains (10) -------------------------------------------------------------------------------------------------------------C4-1m3dK10 K:115-228                                                                                              - Pfam domains (10)
          Pfam domains (11) -------------------------------------------------------------------------------------------------------------C4-1m3dK11 K:115-228                                                                                              - Pfam domains (11)
          Pfam domains (12) -------------------------------------------------------------------------------------------------------------C4-1m3dK12 K:115-228                                                                                              - Pfam domains (12)
          Pfam domains (13) -------------------------------------------------------------------------------------------------------------C4-1m3dK13 K:115-228                                                                                              - Pfam domains (13)
          Pfam domains (14) -------------------------------------------------------------------------------------------------------------C4-1m3dK14 K:115-228                                                                                              - Pfam domains (14)
          Pfam domains (15) -------------------------------------------------------------------------------------------------------------C4-1m3dK15 K:115-228                                                                                              - Pfam domains (15)
          Pfam domains (16) -------------------------------------------------------------------------------------------------------------C4-1m3dK16 K:115-228                                                                                              - Pfam domains (16)
         Sec.struct. author .eeeee.............eeeeeeeeeeeeee..eeee....hhh.ee..ee...eeee.....eee.....eeeee............ee.hhhhhhh.eeeeee....eeeee.............eeeeeeeeeeeee.hhh.eee....hhh.ee.......eeeee...eee.....eeeee...hhhhh......eee....hhhhh.eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) NC1_IV  PDB: - UniProt: 5-229                                                                                                                                                                                                    PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m3d K   6 FLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGENIRPFISRCAVCEAPAMVMAVHSQTIQIPQCPTGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT 229
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225

Chain L from PDB  Type:PROTEIN  Length:222
 aligned with CO4A2_BOVIN | Q7SIB3 from UniProtKB/Swiss-Prot  Length:227

    Alignment length:222
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224  
          CO4A2_BOVIN     5 YLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
               SCOP domains d1m3dl1 L:5-114 Noncollagenous (NC1) domain of collagen IV                                                    d1m3dl2 L:115-226 Noncollagenous (NC1) domain of collagen IV                                                     SCOP domains
               CATH domains 1m3dL00 L:5-226 Noncollagenous (NC1) domain of collagen IV                                                                                                                                                                     CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------C4-1m3dL01 L:112-226                                                                                                Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------C4-1m3dL02 L:112-226                                                                                                Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------C4-1m3dL03 L:112-226                                                                                                Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------------------------C4-1m3dL04 L:112-226                                                                                                Pfam domains (4)
           Pfam domains (5) -----------------------------------------------------------------------------------------------------------C4-1m3dL05 L:112-226                                                                                                Pfam domains (5)
           Pfam domains (6) -----------------------------------------------------------------------------------------------------------C4-1m3dL06 L:112-226                                                                                                Pfam domains (6)
           Pfam domains (7) -----------------------------------------------------------------------------------------------------------C4-1m3dL07 L:112-226                                                                                                Pfam domains (7)
           Pfam domains (8) -----------------------------------------------------------------------------------------------------------C4-1m3dL08 L:112-226                                                                                                Pfam domains (8)
         Sec.struct. author ...........................................hhh..........eeeee...eeee.......................hhhhhhh...........eeeee............eeeeeeeeeeeeee.....eee....hhh.ee............hhh.........eeeee.......ee.....eee....hhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE NC1_IV  PDB: - UniProt: 4-227                                                                                                                                                                                                  PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1m3d L   5 YLLVKHSQTDQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEEDIRPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYYANKYSFWLTTIPEQSFQGTPSADTLKAGLIRTHISRCQVCMKN 226
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: C-type lectin-like (322)

Superfamily: C-type lectin-like (322)

Family: Noncollagenous (NC1) domain of collagen IV (4)

Protein domain: Noncollagenous (NC1) domain of collagen IV (4)

Cow (Bos taurus) [TaxId: 9913] (3)

1a	d1m3da1	A:5-114
1b	d1m3da2	A:115-227
1c	d1m3db1	B:6-114
1d	d1m3db2	B:115-229
1e	d1m3dc1	C:5-114
1f	d1m3dc2	C:115-226
1g	d1m3dd1	D:4-114
1h	d1m3dd2	D:115-228
1i	d1m3de1	E:4-114
1j	d1m3de2	E:115-227
1k	d1m3df1	F:4-114
1l	d1m3df2	F:115-226
1m	d1m3dg1	G:4-114
1n	d1m3dg2	G:115-228
1o	d1m3dh1	H:4-114
1p	d1m3dh2	H:115-227
1q	d1m3di1	I:5-114
1r	d1m3di2	I:115-226
1s	d1m3dj1	J:5-114
1t	d1m3dj2	J:115-227
1u	d1m3dk1	K:6-114
1v	d1m3dk2	K:115-229
1w	d1m3dl1	L:5-114
1x	d1m3dl2	L:115-226

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Complex (381)

Topology: Noncollagenous (NC1) domain of collagen IV (4)

Homologous Superfamily: Noncollagenous (NC1) domain of collagen IV (4)

Cattle (Bos taurus) (3)

1a	1m3dB00	B:6-229
1b	1m3dE00	E:4-227
1c	1m3dH00	H:4-227
1d	1m3dK00	K:6-229
1e	1m3dD00	D:4-228
1f	1m3dG00	G:4-228
1g	1m3dA00	A:5-227
1h	1m3dJ00	J:5-227
1i	1m3dF00	F:4-226
1j	1m3dC00	C:5-226
1k	1m3dI00	I:5-226
1l	1m3dL00	L:5-226

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: C_Lectin (98)

Family: C4 (3)

Bos taurus (Bovine) (2)

1a	C4-1m3dK01	K:115-228
1b	C4-1m3dK02	K:115-228
1c	C4-1m3dK03	K:115-228
1d	C4-1m3dK04	K:115-228
1e	C4-1m3dK05	K:115-228
1f	C4-1m3dK06	K:115-228
1g	C4-1m3dK07	K:115-228
1h	C4-1m3dK08	K:115-228
1i	C4-1m3dK09	K:115-228
1j	C4-1m3dK10	K:115-228
1k	C4-1m3dK11	K:115-228
1l	C4-1m3dK12	K:115-228
1m	C4-1m3dK13	K:115-228
1n	C4-1m3dK14	K:115-228
1o	C4-1m3dK15	K:115-228
1p	C4-1m3dK16	K:115-228
1q	C4-1m3dL01	L:112-226
1r	C4-1m3dL02	L:112-226
1s	C4-1m3dL03	L:112-226
1t	C4-1m3dL04	L:112-226
1u	C4-1m3dL05	L:112-226
1v	C4-1m3dL06	L:112-226
1w	C4-1m3dL07	L:112-226
1x	C4-1m3dL08	L:112-226

Asymmetric Unit(hide GO term definitions)

Chain A,B,D,E,G,H,J,K (CO4A1_BOVIN | Q7SIB2)

molecular function
	GO:0005201	extracellular matrix structural constituent	The action of a molecule that contributes to the structural integrity of the extracellular matrix.
cellular component
	GO:0005604	basement membrane	A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
	GO:0005581	collagen trimer	A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

Chain C,F,I,L (CO4A2_BOVIN | Q7SIB3)

molecular function
	GO:0005201	extracellular matrix structural constituent	The action of a molecule that contributes to the structural integrity of the extracellular matrix.
cellular component
	GO:0005604	basement membrane	A thin layer of dense material found in various animal tissues interposed between the cells and the adjacent connective tissue. It consists of the basal lamina plus an associated layer of reticulin fibers.
	GO:0005581	collagen trimer	A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005578	proteinaceous extracellular matrix	A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

Asymmetric Unit
	Complete Structure
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	Cis Peptide Bonds
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	1m3d
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	CO4A2_BOVIN \| Q7SIB3
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	CO4A1_BOVIN \| Q7SIB2	:	1t60 1t61
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(no "Related Entries Specified in the PDB File" available for 1M3D)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 48)

Sites (48, 48)

SS Bonds (72, 72)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 7)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 24)

CATH Domains (1, 12)

Pfam Domains (1, 24)

Gene Ontology (5, 10)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File