1RLT - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   TRANSITION STATE ANALOGUE OF YBIV FROM E. COLI K12

Authors :   A. Roberts, S. Y. Lee, E. Mccullagh, R. E. Silversmith, D. E. Wemmer

Date :   26 Nov 03 (Deposition) - 07 Dec 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Had Family, Transition-State Analogue, Aluminum Fluoride, Phosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Roberts, S. Y. Lee, E. Mccullagh, R. E. Silversmith, D. E. Wemmer
Ybiv From Escherichia Coli K12 Is A Had Phosphatase.
Proteins V. 58 790 2005
PubMed-ID: 15657928 | Reference-DOI: 10.1002/PROT.20267

Molecule 1 - PHOSPHATASE
	Chains	:	A, B, C, D
	EC Number	:	3.1.3.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21D
	Expression System Strain	:	BL21 DE3 (PACYC)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	YBIV, B0822
	Mutation	:	YES
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 11)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	AF3	4	Ligand/Ion	ALUMINUM FLUORIDE
3	GOL	2	Ligand/Ion	GLYCEROL
4	MG	4	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	AF3	1	Ligand/Ion	ALUMINUM FLUORIDE
3	GOL	-1	Ligand/Ion	GLYCEROL
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	AF3	1	Ligand/Ion	ALUMINUM FLUORIDE
3	GOL	-1	Ligand/Ion	GLYCEROL
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	AF3	1	Ligand/Ion	ALUMINUM FLUORIDE
3	GOL	1	Ligand/Ion	GLYCEROL
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	AF3	1	Ligand/Ion	ALUMINUM FLUORIDE
3	GOL	1	Ligand/Ion	GLYCEROL
4	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:9 , ASP A:11 , ASP A:215 , AF3 A:801 , HOH A:807 , HOH A:892	BINDING SITE FOR RESIDUE MG A 805
02	AC2	SOFTWARE	ASP B:9 , ASP B:11 , ASP B:215 , AF3 B:802 , HOH B:816 , HOH B:889	BINDING SITE FOR RESIDUE MG B 806
03	AC3	SOFTWARE	ASP C:9 , ASP C:11 , ASP C:215 , AF3 C:803 , HOH C:839	BINDING SITE FOR RESIDUE MG C 807
04	AC4	SOFTWARE	ASP D:9 , ASP D:11 , ASP D:215 , AF3 D:804 , HOH D:897 , HOH D:899	BINDING SITE FOR RESIDUE MG D 808
05	AC5	SOFTWARE	LYS A:19 , LYS A:128 , HIS A:129 , HOH A:834	BINDING SITE FOR RESIDUE ACT A 800
06	AC6	SOFTWARE	ASP A:9 , MET A:10 , ASP A:11 , SER A:44 , GLY A:45 , ASN A:46 , GLY A:179 , LYS A:192 , MG A:805 , HOH A:807	BINDING SITE FOR RESIDUE AF3 A 801
07	AC7	SOFTWARE	ASP B:9 , MET B:10 , ASP B:11 , SER B:44 , GLY B:45 , GLY B:179 , LYS B:192 , ASN B:218 , MG B:806 , HOH B:816	BINDING SITE FOR RESIDUE AF3 B 802
08	AC8	SOFTWARE	ASP C:9 , MET C:10 , ASP C:11 , SER C:44 , GLY C:45 , LYS C:192 , ASP C:215 , ASN C:218 , MG C:807	BINDING SITE FOR RESIDUE AF3 C 803
09	AC9	SOFTWARE	ASP D:9 , MET D:10 , ASP D:11 , SER D:44 , GLY D:45 , LYS D:192 , ASN D:218 , MG D:808 , HOH D:899	BINDING SITE FOR RESIDUE AF3 D 804
10	BC1	SOFTWARE	GLY D:45 , TYR D:130 , SER D:150 , SER D:178 , PHE D:182 , ASP D:184	BINDING SITE FOR RESIDUE GOL D 758
11	BC2	SOFTWARE	MET C:126 , TYR C:130 , SER C:150 , SER C:178 , PHE C:182 , ASP C:184 , HOH C:811	BINDING SITE FOR RESIDUE GOL C 759

(no "SS Bond" information available for 1RLT)

Asymmetric Unit

No.	Residues
1	Tyr A:267	-	Pro A:268
2	Tyr C:267	-	Pro C:268

(no "SAP(SNP)/Variant" information available for 1RLT)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COF_2	PS01229	Hypothetical cof family signature 2.	SUPH_ECOLI	213-235	4	A:213-235 B:213-235 C:213-235 D:213-235

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COF_2	PS01229	Hypothetical cof family signature 2.	SUPH_ECOLI	213-235	1	A:213-235 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COF_2	PS01229	Hypothetical cof family signature 2.	SUPH_ECOLI	213-235	1	- B:213-235 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COF_2	PS01229	Hypothetical cof family signature 2.	SUPH_ECOLI	213-235	1	- - C:213-235 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COF_2	PS01229	Hypothetical cof family signature 2.	SUPH_ECOLI	213-235	1	- - - D:213-235

(no "Exon" information available for 1RLT)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:268
 aligned with SUPH_ECOLI | P75792 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:268
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        
           SUPH_ECOLI     3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFN 270
               SCOP domains d1rlta_ A: Sugar phosphatase SupH (YbiV)                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1rltA01 A:3-82,A:189-270  [code=3.40.50.1000, no name defined]                  1rltA02 A:83-188  [code=3.30.1240.10, no name defined]                                                    1rltA01 A:3-82,A:189-270  [code=3.40.50.1000, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.............hhhhhhhhhhhhhhh..eeeee...hhhhhhhhh.......eeeehhh.eeee..eeeee...hhhhhhhhhhhhh......eeeee...eeee...hhhhhhhhhh....eeee.hhhhh...eeeeeeeee..hhhhhhhhhhhhh....eeee....eeeee....hhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhh.eeee....hhhhhhhh.ee..hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COF_2  PDB: A:213-235  ----------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rlt A   3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTYPFN 270
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain B from PDB  Type:PROTEIN  Length:268
 aligned with SUPH_ECOLI | P75792 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:268
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        
           SUPH_ECOLI     3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFN 270
               SCOP domains d1rltb_ B: Sugar phosphatase SupH (YbiV)                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1rltB01 B:3-82,B:189-270  [code=3.40.50.1000, no name defined]                  1rltB02 B:83-188  [code=3.30.1240.10, no name defined]                                                    1rltB01 B:3-82,B:189-270  [code=3.40.50.1000, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.............hhhhhhhhhhhhhhhh.eeeee...hhhhhhhhh.......eeeehhh.eeee..eeeee...hhhhhhhhhhhhh......eeeee...eeee...hhhhhhhhh.....eeee.........eeeeee..hhhhhhhhhhhhhhhh....eeee.....eeee....hhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhh.eeee....hhhhhhhh.ee......hhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COF_2  PDB: B:213-235  ----------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rlt B   3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTYPFN 270
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain C from PDB  Type:PROTEIN  Length:268
 aligned with SUPH_ECOLI | P75792 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:268
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        
           SUPH_ECOLI     3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFN 270
               SCOP domains d1rltc_ C: Sugar phosphatase SupH (YbiV)                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1rltC01 C:3-82,C:189-270  [code=3.40.50.1000, no name defined]                  1rltC02 C:83-188  [code=3.30.1240.10, no name defined]                                                    1rltC01 C:3-82,C:189-270  [code=3.40.50.1000, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.............hhhhhhhhhhhhhhh..eeeee...hhhhhhhhh.......eeeehhh.eeee..eeeee...hhhhhhhhhhhhhh.....eeeee...eeee...hhhhhhhhh.....eeee.hhhhh...eeeeee.......hhhhhhhhhhh....eeee.....eeee....hhhhhhhhhhhhh..hhh.eeeee.hhhhhhhhhhh.eeeee...hhhhhhhh.eee.hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COF_2  PDB: C:213-235  ----------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rlt C   3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTYPFN 270
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain D from PDB  Type:PROTEIN  Length:268
 aligned with SUPH_ECOLI | P75792 from UniProtKB/Swiss-Prot  Length:271

    Alignment length:268
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        
           SUPH_ECOLI     3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFN 270
               SCOP domains d1rltd_ D: Sugar phosphatase SupH (YbiV)                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1rltD01 D:3-82,D:190-270  [code=3.40.50.1000, no name defined]                  1rltD02 D:83-189  [code=3.30.1240.10, no name defined]                                                     1rltD01 D:3-82,D:190-270  [code=3.40.50.1000, no name defined]                    CATH domains
           Pfam domains (1) ---Hydrolase_3-1rltD01 D:6-259                                                                                                                                                                                                                                   ----------- Pfam domains (1)
           Pfam domains (2) ---Hydrolase_3-1rltD02 D:6-259                                                                                                                                                                                                                                   ----------- Pfam domains (2)
           Pfam domains (3) ---Hydrolase_3-1rltD03 D:6-259                                                                                                                                                                                                                                   ----------- Pfam domains (3)
           Pfam domains (4) ---Hydrolase_3-1rltD04 D:6-259                                                                                                                                                                                                                                   ----------- Pfam domains (4)
         Sec.struct. author ..eeee.............hhhhhhhhhhhhhhh..eeeee...hhhhhhhhh.......eeeehhh.eeee..eeeee...hhhhhhhhhhhhh.....eeeeee...eeee...hhhhhhhhhh....eeee.hhhhh...eeeeeee.hhhhhhhhhhhhhhhh....eeee....eeeee....hhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhh.eeee....hhhhhhhh.ee..hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COF_2  PDB: D:213-235  ----------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rlt D   3 VKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTYPFN 270
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: HAD-like (349)

Superfamily: HAD-like (349)

Family: Predicted hydrolases Cof (35)

Protein domain: Sugar phosphatase SupH (YbiV) (3)

Escherichia coli [TaxId: 562] (3)

1a	d1rlta_	A:
1b	d1rltc_	C:
1c	d1rltd_	D:
1d	d1rltb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 (8)

Homologous Superfamily: [code=3.30.1240.10, no name defined] (8)

Escherichia coli. Organism_taxid: 562. (4)

1a	1rltD02	D:83-189
1b	1rltA02	A:83-188
1c	1rltB02	B:83-188
1d	1rltC02	C:83-188

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1000, no name defined] (211)

Escherichia coli. Organism_taxid: 562. (14)

2a	1rltD01	D:3-82,D:190-270
2b	1rltA01	A:3-82,A:189-270
2c	1rltB01	B:3-82,B:189-270
2d	1rltC01	C:3-82,C:189-270

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HAD (186)

Family: Hydrolase_3 (28)

Escherichia coli (strain K12) (4)

1a	Hydrolase_3-1rltD01	D:6-259
1b	Hydrolase_3-1rltD02	D:6-259
1c	Hydrolase_3-1rltD03	D:6-259
1d	Hydrolase_3-1rltD04	D:6-259

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (SUPH_ECOLI | P75792)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0050308	sugar-phosphatase activity	Catalysis of the reaction: sugar phosphate + H2O = sugar + phosphate.
biological process
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0044283	small molecule biosynthetic process	The chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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		Tyr A:267 - Pro A:268	[ RasMol ]
		Tyr C:267 - Pro C:268	[ RasMol ]

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Access by PDB/NDB ID
	1rlt
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		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	3.1.3.-
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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		Interatomic Contacts of Structural Units	:	CSU
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Access by UniProt ID/Accession number
	SUPH_ECOLI \| P75792
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	SUPH_ECOLI \| P75792	:	1rlm 1rlo 2hf2

1rlm	CRYSTAL STRUCTURE OF NATIVE YBIV
1rlo	CRYSTAL STRUCTURE OF BERYLLOFLUORIDE-BOUND YBIV

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (2, 8)

Pfam Domains (1, 4)

Gene Ontology (7, 7)

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File