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1RLT
Asym. Unit
Info
Asym.Unit (189 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (49 KB)
Biol.Unit 4 (49 KB)
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(1)
Title
:
TRANSITION STATE ANALOGUE OF YBIV FROM E. COLI K12
Authors
:
A. Roberts, S. Y. Lee, E. Mccullagh, R. E. Silversmith, D. E. Wemmer
Date
:
26 Nov 03 (Deposition) - 07 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Had Family, Transition-State Analogue, Aluminum Fluoride, Phosphatase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Roberts, S. Y. Lee, E. Mccullagh, R. E. Silversmith, D. E. Wemmer
Ybiv From Escherichia Coli K12 Is A Had Phosphatase.
Proteins V. 58 790 2005
[
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: ALUMINUM FLUORIDE (AF3a)
2b: ALUMINUM FLUORIDE (AF3b)
2c: ALUMINUM FLUORIDE (AF3c)
2d: ALUMINUM FLUORIDE (AF3d)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
AF3
4
Ligand/Ion
ALUMINUM FLUORIDE
3
GOL
2
Ligand/Ion
GLYCEROL
4
MG
4
Ligand/Ion
MAGNESIUM ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:9 , ASP A:11 , ASP A:215 , AF3 A:801 , HOH A:807 , HOH A:892
BINDING SITE FOR RESIDUE MG A 805
02
AC2
SOFTWARE
ASP B:9 , ASP B:11 , ASP B:215 , AF3 B:802 , HOH B:816 , HOH B:889
BINDING SITE FOR RESIDUE MG B 806
03
AC3
SOFTWARE
ASP C:9 , ASP C:11 , ASP C:215 , AF3 C:803 , HOH C:839
BINDING SITE FOR RESIDUE MG C 807
04
AC4
SOFTWARE
ASP D:9 , ASP D:11 , ASP D:215 , AF3 D:804 , HOH D:897 , HOH D:899
BINDING SITE FOR RESIDUE MG D 808
05
AC5
SOFTWARE
LYS A:19 , LYS A:128 , HIS A:129 , HOH A:834
BINDING SITE FOR RESIDUE ACT A 800
06
AC6
SOFTWARE
ASP A:9 , MET A:10 , ASP A:11 , SER A:44 , GLY A:45 , ASN A:46 , GLY A:179 , LYS A:192 , MG A:805 , HOH A:807
BINDING SITE FOR RESIDUE AF3 A 801
07
AC7
SOFTWARE
ASP B:9 , MET B:10 , ASP B:11 , SER B:44 , GLY B:45 , GLY B:179 , LYS B:192 , ASN B:218 , MG B:806 , HOH B:816
BINDING SITE FOR RESIDUE AF3 B 802
08
AC8
SOFTWARE
ASP C:9 , MET C:10 , ASP C:11 , SER C:44 , GLY C:45 , LYS C:192 , ASP C:215 , ASN C:218 , MG C:807
BINDING SITE FOR RESIDUE AF3 C 803
09
AC9
SOFTWARE
ASP D:9 , MET D:10 , ASP D:11 , SER D:44 , GLY D:45 , LYS D:192 , ASN D:218 , MG D:808 , HOH D:899
BINDING SITE FOR RESIDUE AF3 D 804
10
BC1
SOFTWARE
GLY D:45 , TYR D:130 , SER D:150 , SER D:178 , PHE D:182 , ASP D:184
BINDING SITE FOR RESIDUE GOL D 758
11
BC2
SOFTWARE
MET C:126 , TYR C:130 , SER C:150 , SER C:178 , PHE C:182 , ASP C:184 , HOH C:811
BINDING SITE FOR RESIDUE GOL C 759
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: COF_2 (A:213-235,B:213-235,C:213-235,D:21...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COF_2
PS01229
Hypothetical cof family signature 2.
SUPH_ECOLI
213-235
4
A:213-235
B:213-235
C:213-235
D:213-235
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1rlta_ (A:)
1b: SCOP_d1rltc_ (C:)
1c: SCOP_d1rltd_ (D:)
1d: SCOP_d1rltb_ (B:)
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)
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)
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)
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)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
Predicted hydrolases Cof
(35)
Protein domain
:
Sugar phosphatase SupH (YbiV)
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d1rlta_
A:
1b
d1rltc_
C:
1c
d1rltd_
D:
1d
d1rltb_
B:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1rltD02 (D:83-189)
1b: CATH_1rltA02 (A:83-188)
1c: CATH_1rltB02 (B:83-188)
1d: CATH_1rltC02 (C:83-188)
2a: CATH_1rltD01 (D:3-82,D:190-270)
2b: CATH_1rltA01 (A:3-82,A:189-270)
2c: CATH_1rltB01 (B:3-82,B:189-270)
2d: CATH_1rltC01 (C:3-82,C:189-270)
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)
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)
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(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2
(8)
Homologous Superfamily
:
[code=3.30.1240.10, no name defined]
(8)
Escherichia coli. Organism_taxid: 562.
(4)
1a
1rltD02
D:83-189
1b
1rltA02
A:83-188
1c
1rltB02
B:83-188
1d
1rltC02
C:83-188
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Escherichia coli. Organism_taxid: 562.
(14)
2a
1rltD01
D:3-82,D:190-270
2b
1rltA01
A:3-82,A:189-270
2c
1rltB01
B:3-82,B:189-270
2d
1rltC01
C:3-82,C:189-270
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Hydrolase_3_1rltD01 (D:6-259)
1b: PFAM_Hydrolase_3_1rltD02 (D:6-259)
1c: PFAM_Hydrolase_3_1rltD03 (D:6-259)
1d: PFAM_Hydrolase_3_1rltD04 (D:6-259)
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(
)
Organisms
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)
(
)
Clan
:
HAD
(186)
Family
:
Hydrolase_3
(28)
Escherichia coli (strain K12)
(4)
1a
Hydrolase_3-1rltD01
D:6-259
1b
Hydrolase_3-1rltD02
D:6-259
1c
Hydrolase_3-1rltD03
D:6-259
1d
Hydrolase_3-1rltD04
D:6-259
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (189 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
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Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (49 KB)
Header - Biol.Unit 3
Biol.Unit 4 (49 KB)
Header - Biol.Unit 4
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