Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit - manually
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit - manually
Asym./Biol. Unit - manually  (Jmol Viewer)
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PHYCOERYTHRIN 545 FROM THE MARINE CRYPTOPHYTE RHODOMONAS CS24
 
Authors :  S. J. Harrop, K. E. Wilk, R. G. Hiller, P. M. G. Curmi
Date :  10 May 99  (Deposition) - 19 May 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.63
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Phycoerythrin, Light-Harvesting Protein, Cryptophyte, Phycobilin, Photosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. E. Wilk, S. J. Harrop, L. Jankova, D. Edler, G. Keenan, F. Sharples, R. G. Hiller, P. M. Curmi
Evolution Of A Light-Harvesting Protein By Addition Of New Subunits And Rearrangement Of Conserved Elements: Crystal Structure Of A Cryptophyte Phycoerythrin At 1. 63-A Resolution.
Proc. Natl. Acad. Sci. Usa V. 96 8901 1999
PubMed-ID: 10430868  |  Reference-DOI: 10.1073/PNAS.96.16.8901
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (CRYPTOPHYTAN PHYCOERYTHRIN (ALPHA-1 CHAIN))
    Cellular LocationTHYLAKOID LUMEN
    ChainsA
    Organism ScientificRHODOMONAS SP. CS24
    Organism Taxid79257
    Other DetailsCSIRO DIVISION OF FISHERIES HOBART TASMAINIA AUSTRALIA
    StrainCS 24
 
Molecule 2 - PROTEIN (CRYPTOPHYTAN PHYCOERYTHRIN (ALPHA-2 CHAIN))
    Cellular LocationTHYLAKOID LUMEN
    ChainsB
    Organism ScientificRHODOMONAS SP. CS24
    Organism Taxid79257
    Other DetailsCSIRO DIVISION OF FISHERIES HOBART TASMAINIA AUSTRALIA
    StrainCS 24
 
Molecule 3 - PROTEIN (CRYPTOPHYTAN PHYCOERYTHRIN (BETA CHAIN) )
    Cellular LocationTHYLAKOID LUMEN
    ChainsC, D
    Organism ScientificRHODOMONAS SP. CS24
    Organism Taxid79257
    Other DetailsCSIRO DIVISION OF FISHERIES HOBART TASMAINIA AUSTRALIA
    StrainCS 24

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 15)

Asymmetric/Biological Unit (6, 15)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2DBV2Ligand/Ion15,16-DIHYDROBILIVERDIN
3LYZ2Mod. Amino Acid5-HYDROXYLYSINE
4MEN2Mod. Amino AcidN-METHYL ASPARAGINE
5MG2Ligand/IonMAGNESIUM ION
6PEB6Ligand/IonPHYCOERYTHROBILIN

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:68 , SER C:147 , GLN C:148 , PEB D:250 , HOH D:951BINDING SITE FOR RESIDUE CL C 903
02AC2SOFTWAREHOH A:902 , HOH A:903 , HOH B:834 , HOH B:837 , HOH D:903 , HOH D:904BINDING SITE FOR RESIDUE MG A 901
03AC3SOFTWAREHOH D:905 , HOH D:906 , HOH D:907 , HOH D:908 , HOH D:909 , HOH D:910BINDING SITE FOR RESIDUE MG D 902
04AC4SOFTWAREPHE A:14 , CYS A:19 , SER A:20 , ARG A:21 , PRO A:23 , LYS A:24 , GLU A:25 , SER A:26 , GLU A:37 , MET A:38 , MET A:39 , LYS A:41 , HOH A:905 , HOH A:907 , HOH A:919 , HOH A:920 , HOH A:956 , HOH A:999 , HOH A:1000 , HOH A:1003 , LEU B:62 , MET B:65 , THR B:66 , TYR C:18 , PRO D:64 , SER D:65 , ILE D:67BINDING SITE FOR RESIDUE DBV A 219
05AC5SOFTWAREPHE A:64 , ASN A:76 , PHE B:14 , CYS B:19 , SER B:20 , ARG B:21 , PRO B:23 , LYS B:24 , GLU B:25 , TYR B:26 , ASP B:36 , GLU B:37 , MET B:38 , MET B:39 , LYS B:41 , HOH B:367 , HOH B:368 , HOH B:415 , HOH B:448 , HOH B:456 , HOH B:599 , HOH B:600 , HOH B:627 , SER C:65 , ILE C:67 , SER C:68 , HOH D:1082BINDING SITE FOR RESIDUE DBV B 219
06AC6SOFTWAREPHE A:64 , GLU A:65 , ASP A:69 , PRO A:71 , PHE A:72 , THR A:73 , SER A:74 , CYS C:50 , ASP C:54 , SER C:57 , GLY C:58 , CYS C:61 , ARG C:129 , ALA C:136 , CYS C:137 , PHE C:141 , ALA C:146 , SER C:147 , GLN C:148 , HOH C:909 , HOH C:910 , HOH C:964 , HOH C:1006 , HOH C:1007 , HOH C:1118 , LYS D:29 , HOH D:992BINDING SITE FOR RESIDUE PEB C 250
07AC7SOFTWAREMET A:2 , LYZ A:4 , SER A:5 , ALA A:6 , MET C:59 , MEN C:72 , CYS C:73 , ARG C:77 , ARG C:78 , ALA C:81 , CYS C:82 , ARG C:84 , ASP C:85 , ILE C:88 , ARG C:108 , TYR C:117 , LEU C:120 , VAL C:122 , ASN C:127 , HOH C:1020 , HOH C:1024 , HOH C:1026 , HOH C:1028BINDING SITE FOR RESIDUE PEB C 282
08AC8SOFTWAREILE A:13 , ARG A:17 , GLN A:34 , MET A:38 , MET A:39 , LYS C:28 , ASN C:35 , LYS C:36 , LEU C:38 , ASP C:39 , SER C:40 , VAL C:142 , ASN C:143 , ASN C:144 , THR C:153 , PRO C:154 , GLN C:155 , GLY C:156 , CYS C:158 , HOH C:926 , HOH C:927 , HOH C:929 , HOH C:977 , HOH C:978 , HOH C:1091 , HOH D:1073BINDING SITE FOR RESIDUE PEB C 258
09AC9SOFTWAREGLY A:67 , ILE A:68 , LYS B:64 , GLN C:148 , CL C:903 , HOH C:1089 , ASN D:47 , CYS D:50 , ASP D:54 , SER D:57 , GLY D:58 , CYS D:61 , ARG D:129 , ALA D:136 , CYS D:137 , PHE D:141 , HOH D:932 , HOH D:934 , HOH D:947 , HOH D:949 , HOH D:950 , HOH D:961 , HOH D:962BINDING SITE FOR RESIDUE PEB D 250
10BC1SOFTWAREMET B:2 , LYZ B:4 , SER B:5 , ALA B:6 , MEN D:72 , CYS D:73 , ARG D:77 , ARG D:78 , ALA D:81 , CYS D:82 , ARG D:84 , ASP D:85 , ILE D:88 , ARG D:108 , TYR D:117 , LEU D:120 , VAL D:122 , ASN D:127 , HOH D:1150 , HOH D:1159 , HOH D:1163 , HOH D:1164 , HOH D:1165BINDING SITE FOR RESIDUE PEB D 282
11BC2SOFTWAREILE B:13 , ASP B:15 , ARG B:17 , MET B:38 , LEU D:24 , LYS D:28 , ASN D:35 , LYS D:36 , LEU D:38 , ASP D:39 , SER D:40 , VAL D:142 , LEU D:151 , THR D:153 , PRO D:154 , GLN D:155 , GLY D:156 , CYS D:158 , HOH D:984 , HOH D:988 , HOH D:989 , HOH D:990 , HOH D:1051 , HOH D:1053 , HOH D:1107 , HOH D:1108 , HOH D:1184BINDING SITE FOR RESIDUE PEB D 258

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QGW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QGW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QGW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1QGW)

(-) Exons   (0, 0)

(no "Exon" information available for 1QGW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:76
 aligned with PHE3_RHDS2 | Q00433 from UniProtKB/Swiss-Prot  Length:128

    Alignment length:76
                                    62        72        82        92       102       112       122      
           PHE3_RHDS2    53 AMDKSAKAPQITIFDHRGCSRAPKESTGGKAGGQDDEMMVKVASTKVTVSESDAAKKLQEFITFEKGIDGPFTSKN 128
               SCOP domains d1qgwa_ A: Phycoerythrin 545 alpha-subunits                                  SCOP domains
               CATH domains 1qgwA00 A:1-76 Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A           CATH domains
               Pfam domains ------Phycoerythr_ab-1qgwA01 A:7-63                            ------------- Pfam domains
         Sec.struct. author ......eeeeeeeee..................hhhheeeeeeeee....hhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 1qgw A   1 AMDkSAKAPQITIFDHRGCSRAPKESTGGKAGGQDDEMMVKVASTKVTVSESDAAKKLQEFITFEKGIDGPFTSKN  76
                               |    10        20        30        40        50        60        70      
                               4-LYZ                                                                    

Chain B from PDB  Type:PROTEIN  Length:67
 aligned with PHE2_RHDS2 | P30943 from UniProtKB/Swiss-Prot  Length:104

    Alignment length:67
                                    47        57        67        77        87        97       
           PHE2_RHDS2    38 AMDKSAKAPVITIFDHRGCSRAPKEYTGAKAGGKDDEMMVKAQSVKIEVSTGTAEGVLATSLAKMTK 104
               SCOP domains d1qgwb_ B: Phycoerythrin 545 alpha-subunits                         SCOP domains
               CATH domains 1qgwB00 B:1-67 Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A  CATH domains
               Pfam domains ------Phycoerythr_ab-1qgwB01 B:7-63                            ---- Pfam domains
         Sec.struct. author ......eeeeeeeee..................hhhheeeeeeeee....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 1qgw B   1 AMDkSAKAPVITIFDHRGCSRAPKEYTGAKAGGKDDEMMVKAQSVKIEVSTGTAEGVLATSLAKMTK  67
                               |    10        20        30        40        50        60       
                               |                                                               
                               4-LYZ                                                           

Chain C from PDB  Type:PROTEIN  Length:169
 aligned with PHEB_RHDS2 | P27198 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:175
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172     
           PHEB_RHDS2     3 DAFSRVVTNADSKAAYVGGADLQALKKFISEGNKRLDSVNSIVSNASCIVSDAVSGMICENPSLISPSGNCYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETYSSLGVPANSNARAVSIMKACAVAFVNNTASQKKLSTPQGDCSGLASEVGGYFDKVTAAIS 177
               SCOP domains d1qgwc_       C: Phycoerythrin beta subunit                                                                                                                                     SCOP domains
               CATH domains 1qgwC00       C:3-177 Phycocyanins                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.------.....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhh...hhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qgw C   3 DAFSRVV------AAYVGGADLQALKKFISEGNKRLDSVNSIVSNASCIVSDAVSGMICENPSLISPSGnCYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETYSSLGVPANSNARAVSIMKACAVAFVNNTASQKKLSTPQGDCSGLASEVGGYFDKVTAAIS 177
                                  |  -   |    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172     
                                  9     16                                                      72-MEN                                                                                                     

Chain D from PDB  Type:PROTEIN  Length:177
 aligned with PHEB_RHDS2 | P27198 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       
           PHEB_RHDS2     1 MLDAFSRVVTNADSKAAYVGGADLQALKKFISEGNKRLDSVNSIVSNASCIVSDAVSGMICENPSLISPSGNCYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETYSSLGVPANSNARAVSIMKACAVAFVNNTASQKKLSTPQGDCSGLASEVGGYFDKVTAAIS 177
               SCOP domains d1qgwd_ D: Phycoerythrin beta subunit                                                                                                                                             SCOP domains
               CATH domains 1qgwD00 D:1-177 Phycocyanins                                                                                                                                                      CATH domains
           Pfam domains (1) -----Phycobilisome-1qgwD01 D:6-177                                                                                                                                                Pfam domains (1)
           Pfam domains (2) -----Phycobilisome-1qgwD02 D:6-177                                                                                                                                                Pfam domains (2)
         Sec.struct. author ..hhhhhhh...........hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhh...hhhhhhhhhhhhhhhhhhh.....hhh........hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qgw D   1 MLDAFSRVVTNADSKAAYVGGADLQALKKFISEGNKRLDSVNSIVSNASCIVSDAVSGMICENPSLISPSGnCYTNRRMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETYSSLGVPANSNARAVSIMKACAVAFVNNTASQKKLSTPQGDCSGLASEVGGYFDKVTAAIS 177
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170       
                                                                                                  72-MEN                                                                                                     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Clan: Globin (291)

(-) Gene Ontology  (9, 27)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (PHE3_RHDS2 | Q00433)
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009535    chloroplast thylakoid membrane    The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030089    phycobilisome    Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

Chain B   (PHE2_RHDS2 | P30943)
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009535    chloroplast thylakoid membrane    The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030089    phycobilisome    Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

Chain C,D   (PHEB_RHDS2 | P27198)
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009535    chloroplast thylakoid membrane    The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0030089    phycobilisome    Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    DBV  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    LYZ  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MEN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEB  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1qgw)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1qgw
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PHE2_RHDS2 | P30943
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PHE3_RHDS2 | Q00433
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  PHEB_RHDS2 | P27198
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PHE2_RHDS2 | P30943
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PHE3_RHDS2 | Q00433
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PHEB_RHDS2 | P27198
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHE2_RHDS2 | P309431xf6 1xg0
        PHE3_RHDS2 | Q004331xf6 1xg0
        PHEB_RHDS2 | P271981xf6 1xg0

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1QGW)