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1QGW
Asym. Unit
Info
Asym.Unit (105 KB)
Biol.Unit 1 (97 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHYCOERYTHRIN 545 FROM THE MARINE CRYPTOPHYTE RHODOMONAS CS24
Authors
:
S. J. Harrop, K. E. Wilk, R. G. Hiller, P. M. G. Curmi
Date
:
10 May 99 (Deposition) - 19 May 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.63
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Phycoerythrin, Light-Harvesting Protein, Cryptophyte, Phycobilin, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. E. Wilk, S. J. Harrop, L. Jankova, D. Edler, G. Keenan, F. Sharples, R. G. Hiller, P. M. Curmi
Evolution Of A Light-Harvesting Protein By Addition Of New Subunits And Rearrangement Of Conserved Elements: Crystal Structure Of A Cryptophyte Phycoerythrin At 1. 63-A Resolution.
Proc. Natl. Acad. Sci. Usa V. 96 8901 1999
(for further references see the
PDB file header
)
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Hetero Components
(6, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 15,16-DIHYDROBILIVERDIN (DBVa)
2b: 15,16-DIHYDROBILIVERDIN (DBVb)
3a: 5-HYDROXYLYSINE (LYZa)
3b: 5-HYDROXYLYSINE (LYZb)
4a: N-METHYL ASPARAGINE (MENa)
4b: N-METHYL ASPARAGINE (MENb)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: PHYCOERYTHROBILIN (PEBa)
6b: PHYCOERYTHROBILIN (PEBb)
6c: PHYCOERYTHROBILIN (PEBc)
6d: PHYCOERYTHROBILIN (PEBd)
6e: PHYCOERYTHROBILIN (PEBe)
6f: PHYCOERYTHROBILIN (PEBf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
DBV
2
Ligand/Ion
15,16-DIHYDROBILIVERDIN
3
LYZ
2
Mod. Amino Acid
5-HYDROXYLYSINE
4
MEN
2
Mod. Amino Acid
N-METHYL ASPARAGINE
5
MG
2
Ligand/Ion
MAGNESIUM ION
6
PEB
6
Ligand/Ion
PHYCOERYTHROBILIN
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:68 , SER C:147 , GLN C:148 , PEB D:250 , HOH D:951
BINDING SITE FOR RESIDUE CL C 903
02
AC2
SOFTWARE
HOH A:902 , HOH A:903 , HOH B:834 , HOH B:837 , HOH D:903 , HOH D:904
BINDING SITE FOR RESIDUE MG A 901
03
AC3
SOFTWARE
HOH D:905 , HOH D:906 , HOH D:907 , HOH D:908 , HOH D:909 , HOH D:910
BINDING SITE FOR RESIDUE MG D 902
04
AC4
SOFTWARE
PHE A:14 , CYS A:19 , SER A:20 , ARG A:21 , PRO A:23 , LYS A:24 , GLU A:25 , SER A:26 , GLU A:37 , MET A:38 , MET A:39 , LYS A:41 , HOH A:905 , HOH A:907 , HOH A:919 , HOH A:920 , HOH A:956 , HOH A:999 , HOH A:1000 , HOH A:1003 , LEU B:62 , MET B:65 , THR B:66 , TYR C:18 , PRO D:64 , SER D:65 , ILE D:67
BINDING SITE FOR RESIDUE DBV A 219
05
AC5
SOFTWARE
PHE A:64 , ASN A:76 , PHE B:14 , CYS B:19 , SER B:20 , ARG B:21 , PRO B:23 , LYS B:24 , GLU B:25 , TYR B:26 , ASP B:36 , GLU B:37 , MET B:38 , MET B:39 , LYS B:41 , HOH B:367 , HOH B:368 , HOH B:415 , HOH B:448 , HOH B:456 , HOH B:599 , HOH B:600 , HOH B:627 , SER C:65 , ILE C:67 , SER C:68 , HOH D:1082
BINDING SITE FOR RESIDUE DBV B 219
06
AC6
SOFTWARE
PHE A:64 , GLU A:65 , ASP A:69 , PRO A:71 , PHE A:72 , THR A:73 , SER A:74 , CYS C:50 , ASP C:54 , SER C:57 , GLY C:58 , CYS C:61 , ARG C:129 , ALA C:136 , CYS C:137 , PHE C:141 , ALA C:146 , SER C:147 , GLN C:148 , HOH C:909 , HOH C:910 , HOH C:964 , HOH C:1006 , HOH C:1007 , HOH C:1118 , LYS D:29 , HOH D:992
BINDING SITE FOR RESIDUE PEB C 250
07
AC7
SOFTWARE
MET A:2 , LYZ A:4 , SER A:5 , ALA A:6 , MET C:59 , MEN C:72 , CYS C:73 , ARG C:77 , ARG C:78 , ALA C:81 , CYS C:82 , ARG C:84 , ASP C:85 , ILE C:88 , ARG C:108 , TYR C:117 , LEU C:120 , VAL C:122 , ASN C:127 , HOH C:1020 , HOH C:1024 , HOH C:1026 , HOH C:1028
BINDING SITE FOR RESIDUE PEB C 282
08
AC8
SOFTWARE
ILE A:13 , ARG A:17 , GLN A:34 , MET A:38 , MET A:39 , LYS C:28 , ASN C:35 , LYS C:36 , LEU C:38 , ASP C:39 , SER C:40 , VAL C:142 , ASN C:143 , ASN C:144 , THR C:153 , PRO C:154 , GLN C:155 , GLY C:156 , CYS C:158 , HOH C:926 , HOH C:927 , HOH C:929 , HOH C:977 , HOH C:978 , HOH C:1091 , HOH D:1073
BINDING SITE FOR RESIDUE PEB C 258
09
AC9
SOFTWARE
GLY A:67 , ILE A:68 , LYS B:64 , GLN C:148 , CL C:903 , HOH C:1089 , ASN D:47 , CYS D:50 , ASP D:54 , SER D:57 , GLY D:58 , CYS D:61 , ARG D:129 , ALA D:136 , CYS D:137 , PHE D:141 , HOH D:932 , HOH D:934 , HOH D:947 , HOH D:949 , HOH D:950 , HOH D:961 , HOH D:962
BINDING SITE FOR RESIDUE PEB D 250
10
BC1
SOFTWARE
MET B:2 , LYZ B:4 , SER B:5 , ALA B:6 , MEN D:72 , CYS D:73 , ARG D:77 , ARG D:78 , ALA D:81 , CYS D:82 , ARG D:84 , ASP D:85 , ILE D:88 , ARG D:108 , TYR D:117 , LEU D:120 , VAL D:122 , ASN D:127 , HOH D:1150 , HOH D:1159 , HOH D:1163 , HOH D:1164 , HOH D:1165
BINDING SITE FOR RESIDUE PEB D 282
11
BC2
SOFTWARE
ILE B:13 , ASP B:15 , ARG B:17 , MET B:38 , LEU D:24 , LYS D:28 , ASN D:35 , LYS D:36 , LEU D:38 , ASP D:39 , SER D:40 , VAL D:142 , LEU D:151 , THR D:153 , PRO D:154 , GLN D:155 , GLY D:156 , CYS D:158 , HOH D:984 , HOH D:988 , HOH D:989 , HOH D:990 , HOH D:1051 , HOH D:1053 , HOH D:1107 , HOH D:1108 , HOH D:1184
BINDING SITE FOR RESIDUE PEB D 258
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1qgwc_ (C:)
1b: SCOP_d1qgwd_ (D:)
2a: SCOP_d1qgwa_ (A:)
2b: SCOP_d1qgwb_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
Phycoerythrin beta subunit
(6)
Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]
(3)
1a
d1qgwc_
C:
1b
d1qgwd_
D:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Non-globular alpha+beta subunits of globular proteins
(21)
Superfamily
:
Non-globular alpha+beta subunits of globular proteins
(21)
Family
:
Phycoerythrin 545 alpha-subunits
(3)
Protein domain
:
Phycoerythrin 545 alpha-subunits
(3)
Cryptophyte (Rhodomonas sp. CS24) [TaxId: 79257]
(3)
2a
d1qgwa_
A:
2b
d1qgwb_
B:
[
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]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1qgwB00 (B:1-67)
1b: CATH_1qgwA00 (A:1-76)
2a: CATH_1qgwC00 (C:3-177)
2b: CATH_1qgwD00 (D:1-177)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A
(3)
Homologous Superfamily
:
Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A
(3)
Cs24 (Rhodomonas sp)
(3)
1a
1qgwB00
B:1-67
1b
1qgwA00
A:1-76
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Cs24 (Rhodomonas sp)
(3)
2a
1qgwC00
C:3-177
2b
1qgwD00
D:1-177
[
close CATH info
]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Phycobilisome_1qgwD01 (D:6-177)
1b: PFAM_Phycobilisome_1qgwD02 (D:6-177)
2a: PFAM_Phycoerythr_ab_1qgwB01 (B:7-63)
2b: PFAM_Phycoerythr_ab_1qgwA01 (A:7-63)
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(
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(
)
Organisms
(
)
(
)
Clan
:
Globin
(291)
Family
:
Phycobilisome
(15)
Rhodomonas sp. (strain CS 24) (Chroomonas sp. (strain CS24))
(3)
1a
Phycobilisome-1qgwD01
D:6-177
1b
Phycobilisome-1qgwD02
D:6-177
Clan
:
no clan defined [family: Phycoerythr_ab]
(3)
Family
:
Phycoerythr_ab
(3)
Rhodomonas sp. (strain CS 24) (Chroomonas sp. (strain CS24))
(3)
2a
Phycoerythr_ab-1qgwB01
B:7-63
2b
Phycoerythr_ab-1qgwA01
A:7-63
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