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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN VASCULAR ADHESION PROTEIN-1
 
Authors :  T. A. Salminen, T. T. Airenne
Date :  24 Jun 03  (Deposition) - 03 May 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Amine Oxidase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. T. Airenne, Y. Nymalm, H. Kidron, D. J. Smith, M. Pihlavisto, M. Salmi, S. Jalkanen, M. S. Johnson, T. A. Salminen
Crystal Structure Of The Human Vascular Adhesion Protein-1: Unique Structural Features With Functional Implications.
Protein Sci. V. 14 1964 2005
PubMed-ID: 16046623  |  Reference-DOI: 10.1110/PS.051438105
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MEMBRANE COPPER AMINE OXIDASE
    ChainsA, B
    EC Number1.4.3.6
    EngineeredYES
    Expression SystemCRICETULUS GRISEUS
    Expression System CellOVARY CELLS
    Expression System CommonCHINESE HAMSTER
    Expression System Taxid10029
    GeneAOC3 OR VAP1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymVASCULAR ADHESION PROTEIN- 1, VAP-1, HPAO

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2CU2Ligand/IonCOPPER (II) ION
3NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
4TPQ2Mod. Amino Acid5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:130 , GLN A:133 , ASN A:137 , NAG A:2780BINDING SITE FOR RESIDUE NAG A 2779
02AC2SOFTWARENAG A:2779BINDING SITE FOR RESIDUE NAG A 2780
03AC3SOFTWAREARG A:206 , ASN A:232 , SER A:234 , TYR B:448 , SER B:449BINDING SITE FOR RESIDUE NAG A 2781
04AC4SOFTWAREPHE B:130 , GLN B:133 , ASN B:137 , NAG B:2780BINDING SITE FOR RESIDUE NAG B 2779
05AC5SOFTWARENAG B:2779BINDING SITE FOR RESIDUE NAG B 2780
06AC6SOFTWAREASN B:232 , SER B:234BINDING SITE FOR RESIDUE NAG B 2781
07AC7SOFTWARETPQ A:471 , HIS A:520 , HIS A:522 , HIS A:684BINDING SITE FOR RESIDUE CU A 801
08AC8SOFTWARELYS A:106 , ASP A:529 , LEU A:530 , ASP A:531 , ASP A:673 , LEU A:674BINDING SITE FOR RESIDUE CA A 802
09AC9SOFTWAREGLU A:572 , LYS A:638 , GLU A:641 , PHE A:663 , ASN A:665 , GLU A:667BINDING SITE FOR RESIDUE CA A 803
10BC1SOFTWARETPQ B:471 , HIS B:520 , HIS B:522 , HIS B:684BINDING SITE FOR RESIDUE CU B 801
11BC2SOFTWARELYS B:106 , ASP B:529 , LEU B:530 , ASP B:531 , ASN B:537 , ASP B:673 , LEU B:674BINDING SITE FOR RESIDUE CA B 802
12BC3SOFTWAREGLU B:572 , LYS B:638 , GLU B:641 , PHE B:663 , ASN B:665 , GLU B:667BINDING SITE FOR RESIDUE CA B 803

(-) SS Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1A:198 -A:199
2A:404 -A:430
3A:734 -A:741
4A:748 -B:748
5B:198 -B:199
6B:404 -B:430
7B:734 -B:741

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Gly A:144 -Pro A:145
2Leu A:146 -Pro A:147
3Ile A:691 -Pro A:692
4Gly B:144 -Pro B:145
5Leu B:146 -Pro B:147
6Ile B:691 -Pro B:692

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (12, 24)

Asymmetric/Biological Unit (12, 24)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_052603R78QAOC3_HUMANPolymorphism402680A/BR78Q
02UniProtVAR_025027H167YAOC3_HUMANPolymorphism2228470A/BH167Y
03UniProtVAR_052604V171MAOC3_HUMANPolymorphism408038A/BV171M
04UniProtVAR_012064Y317HAOC3_HUMANPolymorphism438287A/BY317H
05UniProtVAR_024343R329QAOC3_HUMANPolymorphism2229595A/BR329Q
06UniProtVAR_025028I371TAOC3_HUMANPolymorphism35097308A/BI371T
07UniProtVAR_025029A408SAOC3_HUMANPolymorphism35643019A/BA408S
08UniProtVAR_025030R426HAOC3_HUMANPolymorphism33986943A/BR426H
09UniProtVAR_025031R441WAOC3_HUMANPolymorphism2229596A/BR441W
10UniProtVAR_025032A582TAOC3_HUMANPolymorphism34987927A/BA582T
11UniProtVAR_025033G700SAOC3_HUMANPolymorphism477207A/BG700S
12UniProtVAR_025034A749VAOC3_HUMANPolymorphism34012919A/BA749V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1COPPER_AMINE_OXID_1PS01164 Copper amine oxidase topaquinone signature.AOC3_HUMAN460-473
 
  2A:460-473
B:460-473
2COPPER_AMINE_OXID_2PS01165 Copper amine oxidase copper-binding site signature.AOC3_HUMAN679-692
 
  2A:679-692
B:679-692

(-) Exons   (4, 8)

Asymmetric/Biological Unit (4, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003084231ENSE00001213814chr17:41003201-410049601760AOC3_HUMAN1-5345342A:55-534 (gaps)
B:57-534 (gaps)
480
478
1.2ENST000003084232ENSE00000899074chr17:41006465-41006750286AOC3_HUMAN534-629962A:534-629
B:534-629
96
96
1.3ENST000003084233ENSE00001213800chr17:41007461-41007590130AOC3_HUMAN629-672442A:629-672
B:629-672
44
44
1.4ENST000003084234ENSE00001178316chr17:41008292-410101381847AOC3_HUMAN673-763912A:673-761
B:673-761 (gaps)
89
89

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:704
 aligned with AOC3_HUMAN | Q16853 from UniProtKB/Swiss-Prot  Length:763

    Alignment length:707
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       
           AOC3_HUMAN    55 GQSQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTAPRGLQSGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQLEAQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNYDYVWDTVFHPSGAIEIRFYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPSFYSADSIYFRGDQDAGACEVNPLACLPQAAACAPDLPAFSHGGFS 761
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1pu4A01 A:55-165  [code=3.10.450.40, no name defined]                                                          1pu4A02 A:166-297  [code=3.10.450.40   , no name defined]                                                                           ------------------------1pu4A03 A:322-728 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                       --------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhh.....hhhhh....eeeeeeeee..hhhhhhhhhh........eeeeeeee......eeeeeeee......eeeehhhhhhh..ee.hhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhh.---...eeee............eeeeeeee.....hhhh.eeeeeeeee....hhhhheeeeeee..eee.hhhhhhhhhhh..............................eee......eeee........eeeeeeee...eeeeeeeee..eeeeeeeeeeeeeeee...hhhhhhheee.hhh...................eeeeeeeee.....eeeeeeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeee..eeeeeeeee.....eeeeeeeee...eee........eeeee..eeee.eeeeeeeeeee.....eeeeeeeeeeeeeee.......eeeeeeeeeeee.hhhhhhee.......eeeeeeeee.....eeeeeeeee..........hhhhhhhhhh.eeeeeee......................hhhhhh.......eeeeeeeeeeeee..hhhhh.........eeeeeeee.....hhhhhh...eeee..........hhhhhh................... Sec.struct. author
                 SAPs(SNPs) -----------------------Q----------------------------------------------------------------------------------------Y---M-------------------------------------------------------------------------------------------------------------------------------------------------H-----------Q-----------------------------------------T------------------------------------S-----------------H--------------W--------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------S------------------------------------------------V------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O--------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:55-534 (gaps) UniProt: 1-534 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                      ----------------------------------------------------------------------------------------------Exon 1.3  PDB: A:629-672 UniProt: 629-672   Exon 1.4  PDB: A:673-761 UniProt: 673-763 [INCOMPLETE]                                    Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.2  PDB: A:534-629 UniProt: 534-629                                                       ------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 1pu4 A  55 GQSQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFY---GRNLVTMTTAPRGLQSGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQLEAQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNyDYVWDTVFHPSGAIEIRFYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPSFYSADSIYFRGDQDAGACEVNPLACLPQAAACAPDLPAFSHGGFS 761
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194      |  -|      214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464      |474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       
                                                                                                                                                                            201 205                                                                                                                                                                                                                                                                       471-TPQ                                                                                                                                                                                                                                                                                              

Chain B from PDB  Type:PROTEIN  Length:699
 aligned with AOC3_HUMAN | Q16853 from UniProtKB/Swiss-Prot  Length:763

    Alignment length:705
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756     
           AOC3_HUMAN    57 SQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTAPRGLQSGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQLEAQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNYDYVWDTVFHPSGAIEIRFYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPSFYSADSIYFRGDQDAGACEVNPLACLPQAAACAPDLPAFSHGGFS 761
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1pu4B01 B:57-165  [code=3.10.450.40, no name defined]                                                        1pu4B02 B:166-297  [code=3.10.450.40,  no name defined]                                                                             ------------------------1pu4B03 B:322-741 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                         --------------- CATH domains
           Pfam domains (1) ---------Cu_amine_oxidN2-1pu4B01 B:66-152                                                       ----------------Cu_amine_oxidN3-1pu4B03 B:169-269                                                                    -------------------------------------------Cu_amine_oxid-1pu4B05 B:313-724                                                                                                                                                                                                                                                                                                                                                                                             -----------------     --------------- Pfam domains (1)
           Pfam domains (2) ---------Cu_amine_oxidN2-1pu4B02 B:66-152                                                       ----------------Cu_amine_oxidN3-1pu4B04 B:169-269                                                                    -------------------------------------------Cu_amine_oxid-1pu4B06 B:313-724                                                                                                                                                                                                                                                                                                                                                                                             -----------------     --------------- Pfam domains (2)
         Sec.struct. author .......hhhhhhhhhhhhhhhh.....hhhhh....eeeeeeeee..hhhhhhhhhhhh......eeeeeeee......eeeeeeee......eeeehhhhhhh..ee.hhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhh..-....eeee............eeeeeeee.....hhhh.eeeeeeeee....hhhhheeeeeee..eee.hhhhhhhhhhh..............................eee......eeee........eeeeeeee...eeeeeeeee..eeeeeeeeeeeeeeee...hhhhhhheee.hhh...................eeeeeeeee.....eeeeeeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeee..eeeeeeeee.....eeeeeeeee...eee........eeeee..eeee.eeeeeeeeeee.....eeeeeeeeeeeeeee.......eeeeeeeeeeee.hhhhhhee.......eeeeeeeee.....eeeeeeeee..........hhhhhhhhhh.eeeeeee......................hhhhh........eeeeeeeeeeeee..hhhhh.........eeeeeeee.....hhhhhh...eeee..........hhhhh-----............... Sec.struct. author
                 SAPs(SNPs) ---------------------Q----------------------------------------------------------------------------------------Y---M-------------------------------------------------------------------------------------------------------------------------------------------------H-----------Q-----------------------------------------T------------------------------------S-----------------H--------------W--------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------S------------------------------------------------V------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O--------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:57-534 (gaps) UniProt: 1-534 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                    ----------------------------------------------------------------------------------------------Exon 1.3  PDB: B:629-672 UniProt: 629-672   Exon 1.4  PDB: B:673-761 (gaps) UniProt: 673-763 [INCOMPLETE]                             Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.2  PDB: B:534-629 UniProt: 534-629                                                       ------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 1pu4 B  57 SQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYK-RGRNLVTMTTAPRGLQSGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQLEAQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNyDYVWDTVFHPSGAIEIRFYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPSFYSADSIYFRGDQDAGACEVNPLAC-----ACAPDLPAFSHGGFS 761
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196     | 206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466    |  476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736    |    -|      756     
                                                                                                                                                                           202 |                                                                                                                                                                                                                                                                        471-TPQ                                                                                                                                                                                                                                                                       741   747              
                                                                                                                                                                             204                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1PU4)

(-) CATH Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 6)

Asymmetric/Biological Unit

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (AOC3_HUMAN | Q16853)
molecular function
    GO:0052595    aliphatic-amine oxidase activity    Catalysis of the reaction: an aliphatic amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide + H+.
    GO:0052594    aminoacetone:oxygen oxidoreductase(deaminating) activity    Catalysis of the reaction: aminoacetone + H2O + O2 = methylglyoxal + NH3 + hydrogen peroxide + H+.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0052596    phenethylamine:oxygen oxidoreductase (deaminating) activity    Catalysis of the reaction: phenylethylamine + O2 + H2O = phenylacetaldehyde + NH3 + hydrogen peroxide + H+.
    GO:0008131    primary amine oxidase activity    Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
    GO:0052593    tryptamine:oxygen oxidoreductase (deaminating) activity    Catalysis of the reaction: tryptamine + H2O + O2 = NH3 + indole acetaldehyde + hydrogen peroxide + H+.
biological process
    GO:0009308    amine metabolic process    The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0006805    xenobiotic metabolic process    The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005769    early endosome    A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005902    microvillus    Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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        AOC3_HUMAN | Q168531us1 2c10 2c11 2y73 2y74 3ala 4btw 4btx 4bty

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