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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN VASCULAR ADHESION PROTEIN-1 IN COMPLEX WITH PYRIDAZINONE INHIBITORS

Authors :   E. Bligt-Linden, M. Pihlavisto, I. Szatmari, Z. Otwinowski, D. J. Smit L. Lazar, F. Fulop, T. A. Salminen

Date :   19 Jun 13 (Deposition) - 18 Dec 13 (Release) - 15 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Bligt-Linden, M. Pihlavisto, I. Szatmari, Z. Otwinowski, D. J. Smith, L. Lazar, F. Fulop, T. A. Salminen
Novel Pyridazinone Inhibitors For Vascular Adhesion Protein- 1 (Vap-1): Old Target - New Inhibition Mode.
J. Med. Chem. V. 56 9837 2013
PubMed-ID: 24304424 | Reference-DOI: 10.1021/JM401372D

Molecule 1 - MEMBRANE PRIMARY AMINE OXIDASE
	Chains	:	A, B
	EC Number	:	1.4.3.21
	Fragment	:	RESIDUES 27-763
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	TYR471 POST TRANSLATIONALLY MODIFIED TO TOPAQUINONE
	Synonym	:	COPPER AMINE OXIDASE, HPAO, SEMICARBAZIDE-SENSITIVE AMINE OXIDASE, SSAO, VASCULAR ADHESION PROTEIN 1, VAP-1
	Tissue	:	SERUM

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (7, 28)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	CA	4	Ligand/Ion	CALCIUM ION
3	CU	2	Ligand/Ion	COPPER (II) ION
4	JW7	2	Ligand/Ion	5-(CYCLOHEXYLAMINO)-2-PHENYL-6-(1H-1,2,4-TRIAZOL-5-YL)-3(2H)-PYRIDAZINONE
5	MAN	1	Ligand/Ion
6	NAG	14	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
7	TPQ	2	Mod. Amino Acid	5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:520 , HIS A:522 , HIS A:684	BINDING SITE FOR RESIDUE CU A1762
02	AC2	SOFTWARE	ASP A:529 , LEU A:530 , ASP A:531 , ASP A:673 , LEU A:674	BINDING SITE FOR RESIDUE CA A1763
03	AC3	SOFTWARE	GLU A:572 , PHE A:663 , ASN A:665 , GLU A:667	BINDING SITE FOR RESIDUE CA A1764
04	AC4	SOFTWARE	TYR A:176 , ASP A:180 , THR A:210 , PHE A:389 , TYR A:394 , LEU A:469 , HOH A:2064 , LEU B:447 , TYR B:448	BINDING SITE FOR RESIDUE JW7 A2000
05	AC5	SOFTWARE	HIS B:520 , HIS B:522 , HIS B:684 , HOH B:2025	BINDING SITE FOR RESIDUE CU B1762
06	AC6	SOFTWARE	ASP B:529 , LEU B:530 , ASP B:531 , ASN B:537 , ASP B:673 , LEU B:674	BINDING SITE FOR RESIDUE CA B1763
07	AC7	SOFTWARE	GLU B:572 , LYS B:638 , GLU B:641 , PHE B:663 , ASN B:665 , GLU B:667	BINDING SITE FOR RESIDUE CA B1764
08	AC8	SOFTWARE	ASN B:294	BINDING SITE FOR RESIDUE NAG B1772
09	AC9	SOFTWARE	TYR A:448 , TYR B:176 , ASP B:180 , THR B:210 , THR B:212 , TYR B:394 , LEU B:469 , HOH B:2010	BINDING SITE FOR RESIDUE JW7 B2000
10	BC1	SOFTWARE	PHE A:130 , GLN A:133 , ASN A:137 , PRO A:163	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1765 THROUGH BMA A1767 BOUND TO ASN A 137
11	BC2	SOFTWARE	ARG A:206 , ASN A:232 , TYR B:448 , SER B:449 , HIS B:450 , ASP B:728	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1768 THROUGH NAG A1769 BOUND TO ASN A 232
12	BC3	SOFTWARE	ASN A:592 , HIS A:593	BINDING SITE FOR MONO-SACCHARIDE NAG A1770 BOUND TO ASN A 592
13	BC4	SOFTWARE	ASN A:666	BINDING SITE FOR MONO-SACCHARIDE NAG A1771 BOUND TO ASN A 666
14	BC5	SOFTWARE	PHE B:130 , GLN B:133 , ASN B:137 , SER B:139 , PRO B:163	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1765 THROUGH MAN B1769 BOUND TO ASN B 137
15	BC6	SOFTWARE	HOH A:2041 , ASN B:232 , SER B:234	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1770 THROUGH NAG B1771 BOUND TO ASN B 232
16	BC7	SOFTWARE	ASN B:592 , HIS B:593	BINDING SITE FOR MONO-SACCHARIDE NAG B1773 BOUND TO ASN B 592
17	BC8	SOFTWARE	ASN B:618	BINDING SITE FOR MONO-SACCHARIDE NAG B1774 BOUND TO ASN B 618
18	BC9	SOFTWARE	ASN B:666	BINDING SITE FOR MONO-SACCHARIDE NAG B1775 BOUND TO ASN B 666

Asymmetric/Biological Unit

No.	Residues
1	A:198	-	A:199
2	A:404	-	A:430
3	A:734	-	A:741
4	A:748	-	B:748
5	B:198	-	B:199
6	B:404	-	B:430
7	B:734	-	B:741

Asymmetric/Biological Unit

No.	Residues
1	Gly A:144	-	Pro A:145
2	Leu A:146	-	Pro A:147
3	His A:203	-	Arg A:204
4	Ile A:691	-	Pro A:692
5	Gly B:144	-	Pro B:145
6	Leu B:146	-	Pro B:147
7	His B:203	-	Arg B:204
8	Ile B:691	-	Pro B:692

Asymmetric/Biological Unit (13, 26)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_052603	R	78	Q	AOC3_HUMAN	Polymorphism	402680	A/B	R	78	Q
02	UniProt	VAR_025027	H	167	Y	AOC3_HUMAN	Polymorphism	2228470	A/B	H	167	Y
03	UniProt	VAR_052604	V	171	M	AOC3_HUMAN	Polymorphism	408038	A/B	V	171	M
04	UniProt	VAR_052605	H	203	R	AOC3_HUMAN	Polymorphism	630079	A/B	H	203	R
05	UniProt	VAR_012064	Y	317	H	AOC3_HUMAN	Polymorphism	438287	A/B	Y	317	H
06	UniProt	VAR_024343	R	329	Q	AOC3_HUMAN	Polymorphism	2229595	A/B	R	329	Q
07	UniProt	VAR_025028	I	371	T	AOC3_HUMAN	Polymorphism	35097308	A/B	I	371	T
08	UniProt	VAR_025029	A	408	S	AOC3_HUMAN	Polymorphism	35643019	A/B	A	408	S
09	UniProt	VAR_025030	R	426	H	AOC3_HUMAN	Polymorphism	33986943	A/B	R	426	H
10	UniProt	VAR_025031	R	441	W	AOC3_HUMAN	Polymorphism	2229596	A/B	R	441	W
11	UniProt	VAR_025032	A	582	T	AOC3_HUMAN	Polymorphism	34987927	A/B	A	582	T
12	UniProt	VAR_025033	G	700	S	AOC3_HUMAN	Polymorphism	477207	A/B	G	700	S
13	UniProt	VAR_025034	A	749	V	AOC3_HUMAN	Polymorphism	34012919	A/B	A	749	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_AMINE_OXID_1	PS01164	Copper amine oxidase topaquinone signature.	AOC3_HUMAN	460-473	2	A:460-473 B:460-473
2	COPPER_AMINE_OXID_2	PS01165	Copper amine oxidase copper-binding site signature.	AOC3_HUMAN	679-692	2	A:679-692 B:679-692

Asymmetric/Biological Unit (4, 8)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000308423	1	ENSE00001213814	chr17:41003201-41004960	1760	AOC3_HUMAN	1-534	534	2	A:52-534 B:57-534	483 478
1.2	ENST00000308423	2	ENSE00000899074	chr17:41006465-41006750	286	AOC3_HUMAN	534-629	96	2	A:534-629 B:534-629	96 96
1.3	ENST00000308423	3	ENSE00001213800	chr17:41007461-41007590	130	AOC3_HUMAN	629-672	44	2	A:629-672 B:629-672	44 44
1.4	ENST00000308423	4	ENSE00001178316	chr17:41008292-41010138	1847	AOC3_HUMAN	673-763	91	2	A:673-762 B:673-761	90 89

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:711
 aligned with AOC3_HUMAN | Q16853 from UniProtKB/Swiss-Prot  Length:763

    Alignment length:711
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761 
           AOC3_HUMAN    52 THPGQSQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTAPRGLQSGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQLEAQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNYDYVWDTVFHPSGAIEIRFYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPSFYSADSIYFRGDQDAGACEVNPLACLPQAAACAPDLPAFSHGGFSH 762
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhh...eehhhhh....eeeeeeeee..hhhhhhhhhhh.......eeeeeeee......eeeeeeee......eeeehhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee...........eeeeeeee.....hhhh.eeeeeeeee....hhhhheeeeeee..eee.hhhhhhhhhhh..............................eee......eeee..eeee..eeeeeee.....eeeeeeee..eeeeeeeeeeeeeeee...hhhhhhheee.hhh.....ee............eeeeeeeee.....eeeeeeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeee..eeeeeeeee.....eeeee..ee....ee...hhhh.eeeee..eeee.eeeeeeeeeee......eeeeeeeeeeeeee.......eeeeeeeeeeee..hhhhhee.......eeeeeeeee.....eeeeeeee...........hhhhhhhhhh.eee.eee......................hhhhhh.....eee.eee.....eee..hhhhh.........eeeeeeee.....hhhhhh...eeee..........hhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) --------------------------Q----------------------------------------------------------------------------------------Y---M-------------------------------R-----------------------------------------------------------------------------------------------------------------H-----------Q-----------------------------------------T------------------------------------S-----------------H--------------W--------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------S------------------------------------------------V------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O---------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:52-534 UniProt: 1-534 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                ----------------------------------------------------------------------------------------------Exon 1.3  PDB: A:629-672 UniProt: 629-672   Exon 1.4  PDB: A:673-762 UniProt: 673-763 [INCOMPLETE]                                     Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.2  PDB: A:534-629 UniProt: 534-629                                                       ------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 4btw A  52 THPGQSQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTAPRGLQSGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQLEAQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNyDYVWDTVFHPSGAIEIRFYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPSFYSADSIYFRGDQDAGACEVNPLACLPQAAACAPDLPAFSHGGFSH 762
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761 
                                                                                                                                                                                                                                                                                                                                                                                                                                                             471-TPQ

Chain B from PDB  Type:PROTEIN  Length:705
 aligned with AOC3_HUMAN | Q16853 from UniProtKB/Swiss-Prot  Length:763

    Alignment length:705
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756     
           AOC3_HUMAN    57 SQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTAPRGLQSGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQLEAQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNYDYVWDTVFHPSGAIEIRFYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPSFYSADSIYFRGDQDAGACEVNPLACLPQAAACAPDLPAFSHGGFS 761
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhh....eehhhhh....eeeeeeeee..hhhhhhhhhhh.......eeeeeeee......eeeeeeee......eeeehhhhhh...ee......hhhhhhhhhhhhhh..hhhhhhhhhhhhh.......eeee............eeeeeeee..........eeeeeeeee....hhhhh...eeee..ee..hhhhhhhhhhh..............................eee......eeee..eeee..eeeeeeee...eeeeeeeee..eeeeeeeeeeeeeeee...hhhhhhheee.hhh.....ee............eeeeeeeee.....eeeeeeeeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeee..eeeeeeeee.....eeeeeeeee...eee........eeeee..eeee.eeeeeeeeeee.....ee..eeeeeeeeeeee..eeeeeeeeeeee..........eee.......eeeeeeeee.....eeeeeeeee............hhhhhh...eeeeeee.........hhhhh........hhhhhh.......eeeeeeeeeeeee..hhhhh........eeeeeeee......hhhhhh...eeee................................... Sec.struct. author
                 SAPs(SNPs) ---------------------Q----------------------------------------------------------------------------------------Y---M-------------------------------R-----------------------------------------------------------------------------------------------------------------H-----------Q-----------------------------------------T------------------------------------S-----------------H--------------W--------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------S------------------------------------------------V------------ SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O--------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:57-534 UniProt: 1-534 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                           ----------------------------------------------------------------------------------------------Exon 1.3  PDB: B:629-672 UniProt: 629-672   Exon 1.4  PDB: B:673-761 UniProt: 673-763 [INCOMPLETE]                                    Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.2  PDB: B:534-629 UniProt: 534-629                                                       ------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 4btw B  57 SQLFADLSREELTAVMRFLTQRLGPGLVDAAQARPSDNCVFSVELQLPPKAAALAHLDRGSPPPAREALAIVFFGRQPQPNVSELVVGPLPHPSYMRDVTVERHGGPLPYHRRPVLFQEYLDIDQMIFNRELPQASGLLHHCCFYKHRGRNLVTMTTAPRGLQSGDRATWFGLYYNISGAGFFLHHVGLELLVNHKALDPARWTIQKVFYQGRYYDSLAQLEAQFEAGLVNVVLIPDNGTGGSWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSLWTFSFGLGAFSGPRIFDVRFQGERLVYEISLQEALAIYGGNSPAAMTTRYVDGGFGMGKYTTPLTRGVDCPYLATYVDWHFLLESQAPKTIRDAFCVFEQNQGLPLRRHHSDLYSHYFGGLAETVLVVRSMSTLLNyDYVWDTVFHPSGAIEIRFYATGYISSAFLFGATGKYGNQVSEHTLGTVHTHSAHFKVDLDVAGLENWVWAEDMVFVPMAVPWSPEHQLQRLQVTRKLLEMEEQAAFLVGSATPRYLYLASNHSNKWGHPRGYRIQMLSFAGEPLPQNSSMARGFSWERYQLAVTQRKEEEPSSSSVFNQNDPWAPTVDFSDFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDEDPSFYSADSIYFRGDQDAGACEVNPLACLPQAAACAPDLPAFSHGGFS 761
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466    |  476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756     
                                                                                                                                                                                                                                                                                                                                                                                                                                                        471-TPQ

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4BTW)

(no "CATH Domain" information available for 4BTW)

(no "Pfam Domain" information available for 4BTW)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (AOC3_HUMAN | Q16853)

molecular function
	GO:0052595	aliphatic-amine oxidase activity	Catalysis of the reaction: an aliphatic amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide + H+.
	GO:0052594	aminoacetone:oxygen oxidoreductase(deaminating) activity	Catalysis of the reaction: aminoacetone + H2O + O2 = methylglyoxal + NH3 + hydrogen peroxide + H+.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0052596	phenethylamine:oxygen oxidoreductase (deaminating) activity	Catalysis of the reaction: phenylethylamine + O2 + H2O = phenylacetaldehyde + NH3 + hydrogen peroxide + H+.
	GO:0008131	primary amine oxidase activity	Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0048038	quinone binding	Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
	GO:0052593	tryptamine:oxygen oxidoreductase (deaminating) activity	Catalysis of the reaction: tryptamine + H2O + O2 = NH3 + indole acetaldehyde + hydrogen peroxide + H+.
biological process
	GO:0009308	amine metabolic process	The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0006954	inflammatory response	The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
	GO:0006805	xenobiotic metabolic process	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
	GO:0005794	Golgi apparatus	A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005769	early endosome	A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005902	microvillus	Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	AOC3_HUMAN \| Q16853	:	1pu4 1us1 2c10 2c11 2y73 2y74 3ala 4btx 4bty

4btx	CRYSTAL STRUCTURE OF HUMAN VASCULAR ADHESION PROTEIN-1 IN COMPLEX WITH PYRIDAZINONE INHIBITORS
4bty	CRYSTAL STRUCTURE OF HUMAN VASCULAR ADHESION PROTEIN-1 IN COMPLEX WITH PYRIDAZINONE INHIBITORS

Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (7, 28)

Sites (18, 18)

SS Bonds (7, 7)

Cis Peptide Bonds (8, 8)

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