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(-) Description

Title :  PERIDININ-CHLOROPHYLL-PROTEIN OF AMPHIDINIUM CARTERAE
 
Authors :  E. Hofmann, W. Welte, K. Diederichs
Date :  06 Mar 96  (Deposition) - 20 Aug 97  (Release) - 17 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  M,N,O
Keywords :  Light Harvesting Protein, Photosynthesis, Carotenoids, Dinoflagellates, Light-Harvesting Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Hofmann, P. M. Wrench, F. P. Sharples, R. G. Hiller, W. Welte, K. Diederichs
Structural Basis Of Light Harvesting By Carotenoids: Peridinin-Chlorophyll-Protein From Amphidinium Carterae.
Science V. 272 1788 1996
PubMed-ID: 8650577
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PERIDININ-CHLOROPHYLL PROTEIN
    Chains: M, N, O
    Organism Scientific: AMPHIDINIUM CARTERAE
    Organism Taxid: 2961
    Strain: CS-21
    Synonym: PCP

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : MNO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 36)

Asymmetric/Biological Unit (3, 36)
No.NameCountTypeFull Name
1CLA6Ligand/IonCHLOROPHYLL A
2DGD6Ligand/IonDIGALACTOSYL DIACYL GLYCEROL (DGDG)
3PID24Ligand/IonPERIDININ

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA M:62 , ALA M:63 , HIS M:66 , ALA M:132 , ILE M:211 , PID M:611 , PID M:612 , PID M:613 , PID M:614 , DGD M:615 , HOH M:701BINDING SITE FOR RESIDUE CLA M 601
02AC2SOFTWAREILE M:184 , ALA M:225 , HIS M:229 , TYR M:247 , PID M:621 , PID M:622 , PID M:623 , PID M:624 , HOH M:678 , DGD O:625BINDING SITE FOR RESIDUE CLA M 602
03AC3SOFTWAREPHE M:17 , TRP M:23 , PHE M:28 , LEU M:29 , PRO M:120 , MET M:123 , LYS M:124 , TYR M:136 , ALA M:200 , SER M:203 , ILE M:207 , CLA M:601 , DGD M:615 , HOH M:630 , HOH M:636 , HOH M:637BINDING SITE FOR RESIDUE PID M 611
04AC4SOFTWAREPHE M:28 , LYS M:118 , VAL M:119 , TYR M:122 , MET M:123 , CLA M:601 , DGD M:615 , PID M:622 , PID M:623 , LEU N:292 , HOH N:626 , DGD O:625BINDING SITE FOR RESIDUE PID M 612
05AC5SOFTWAREMET M:47 , VAL M:104 , MET M:105 , VAL M:107 , TYR M:108 , LYS M:143 , LEU M:222 , CLA M:601 , PID M:614 , DGD M:615 , PID M:622BINDING SITE FOR RESIDUE PID M 613
06AC6SOFTWARETRP M:23 , ILE M:73 , GLY M:78 , VAL M:79 , THR M:80 , TRP M:85 , ASN M:89 , LEU M:92 , GLU M:101 , PHE M:139 , GLN M:150 , GLN M:201 , LEU M:204 , CLA M:601 , PID M:613BINDING SITE FOR RESIDUE PID M 614
07AC7SOFTWARELEU M:35 , PRO M:37 , ALA M:40 , PHE M:180 , ILE M:184 , TRP M:186 , TYR M:191 , PRO M:282 , MET M:285 , PHE M:286 , CLA M:602 , HOH M:641 , HOH M:670 , HOH M:671 , HOH M:704 , HOH M:712 , DGD O:625BINDING SITE FOR RESIDUE PID M 621
08AC8SOFTWAREILE M:44 , MET M:47 , VAL M:190 , TYR M:191 , LYS M:193 , ILE M:281 , ASN M:284 , MET M:285 , CLA M:602 , PID M:612 , PID M:613 , DGD M:615 , LEU N:283 , DGD O:625 , HOH O:632BINDING SITE FOR RESIDUE PID M 622
09AC9SOFTWARELEU M:59 , MET M:210 , GLY M:214 , VAL M:266 , TYR M:270 , TYR M:302 , CLA M:602 , PID M:612 , PID M:624 , HOH M:710 , DGD O:625BINDING SITE FOR RESIDUE PID M 623
10BC1SOFTWARETRP M:186 , GLY M:240 , VAL M:241 , THR M:242 , ASN M:251 , LEU M:254 , PHE M:301 , VAL M:308 , GLN M:312 , CLA M:602 , PID M:623 , HOH M:737BINDING SITE FOR RESIDUE PID M 624
11BC2SOFTWARETYR M:108 , SER M:112 , PRO M:120 , GLU M:133 , TYR M:136 , GLU M:137 , CLA M:601 , PID M:611 , PID M:612 , PID M:613 , PID M:622BINDING SITE FOR RESIDUE DGD M 615
12BC3SOFTWARETYR M:270 , MET M:273 , THR M:277 , PRO M:282 , ASN M:295 , ALA M:298 , LYS M:299 , TYR M:302 , CLA M:602 , PID M:612 , PID M:621 , PID M:622 , PID M:623 , HOH M:670 , HOH M:710 , ASP O:22 , ASN O:24 , ASN O:25 , GLY O:26 , HOH O:627 , HOH O:629 , HOH O:631 , HOH O:635BINDING SITE FOR RESIDUE DGD O 625
13BC4SOFTWAREALA N:62 , ALA N:63 , HIS N:66 , ALA N:132 , PHE N:139 , ILE N:211 , PID N:611 , PID N:612 , PID N:613 , PID N:614 , DGD N:615 , HOH N:699BINDING SITE FOR RESIDUE CLA N 601
14BC5SOFTWAREDGD M:625 , ILE N:184 , ALA N:225 , HIS N:229 , TYR N:247 , PID N:621 , PID N:622 , PID N:623 , PID N:624 , HOH N:677BINDING SITE FOR RESIDUE CLA N 602
15BC6SOFTWAREPHE N:17 , TRP N:23 , PHE N:28 , LEU N:29 , PRO N:120 , MET N:123 , LYS N:124 , TYR N:136 , ALA N:200 , SER N:203 , ILE N:207 , CLA N:601 , DGD N:615 , HOH N:630 , HOH N:636 , HOH N:637BINDING SITE FOR RESIDUE PID N 611
16BC7SOFTWAREPHE N:28 , ALA N:31 , PRO N:32 , LYS N:118 , VAL N:119 , TYR N:122 , MET N:123 , CLA N:601 , DGD N:615 , PID N:622 , PID N:623 , LEU O:292 , HOH O:634BINDING SITE FOR RESIDUE PID N 612
17BC8SOFTWAREMET N:47 , VAL N:104 , MET N:105 , VAL N:107 , TYR N:108 , LYS N:143 , LEU N:222 , CLA N:601 , PID N:614 , DGD N:615 , PID N:622BINDING SITE FOR RESIDUE PID N 613
18BC9SOFTWARETRP N:23 , ILE N:73 , GLY N:78 , VAL N:79 , THR N:80 , TRP N:85 , ASN N:89 , LEU N:92 , GLU N:101 , PHE N:139 , LYS N:143 , GLN N:150 , GLN N:201 , LEU N:204 , CLA N:601 , PID N:613BINDING SITE FOR RESIDUE PID N 614
19CC1SOFTWAREDGD M:625 , LEU N:35 , PRO N:37 , ALA N:40 , PHE N:180 , ILE N:184 , TRP N:186 , TYR N:191 , PRO N:282 , MET N:285 , PHE N:286 , ALA N:298 , CLA N:602 , HOH N:641 , HOH N:669 , HOH N:670 , HOH N:702 , HOH N:710BINDING SITE FOR RESIDUE PID N 621
20CC2SOFTWAREDGD M:625 , ILE N:44 , MET N:47 , VAL N:190 , TYR N:191 , LYS N:193 , ILE N:281 , ASN N:284 , MET N:285 , CLA N:602 , PID N:612 , PID N:613 , DGD N:615 , LEU O:283 , HOH O:632BINDING SITE FOR RESIDUE PID N 622
21CC3SOFTWAREDGD M:625 , LEU N:59 , MET N:210 , GLY N:214 , VAL N:266 , TYR N:270 , TYR N:302 , CLA N:602 , PID N:612 , PID N:624 , HOH N:708BINDING SITE FOR RESIDUE PID N 623
22CC4SOFTWARETRP N:186 , GLY N:240 , VAL N:241 , THR N:242 , ASN N:251 , LEU N:254 , PHE N:301 , LYS N:305 , VAL N:308 , GLN N:312 , CLA N:602 , PID N:623 , HOH N:735BINDING SITE FOR RESIDUE PID N 624
23CC5SOFTWARETYR N:108 , SER N:112 , PRO N:120 , GLU N:133 , TYR N:136 , GLU N:137 , CLA N:601 , PID N:611 , PID N:612 , PID N:613 , PID N:622BINDING SITE FOR RESIDUE DGD N 615
24CC6SOFTWAREASP M:22 , ASN M:24 , ASN M:25 , GLY M:26 , HOH M:627 , HOH M:760 , HOH M:762 , HOH M:764 , TYR N:270 , MET N:273 , THR N:277 , PRO N:282 , ASN N:295 , ALA N:298 , LYS N:299 , TYR N:302 , CLA N:602 , PID N:621 , PID N:622 , PID N:623 , HOH N:669 , HOH N:708BINDING SITE FOR RESIDUE DGD M 625
25CC7SOFTWAREALA O:62 , ALA O:63 , HIS O:66 , ALA O:132 , PHE O:139 , ILE O:211 , PID O:611 , PID O:613 , PID O:614 , DGD O:615 , HOH O:708BINDING SITE FOR RESIDUE CLA O 601
26CC8SOFTWAREDGD N:625 , ILE O:184 , ALA O:225 , HIS O:229 , TYR O:247 , PID O:621 , PID O:622 , PID O:623 , PID O:624 , HOH O:685BINDING SITE FOR RESIDUE CLA O 602
27CC9SOFTWAREPHE O:17 , TRP O:23 , PHE O:28 , LEU O:29 , PRO O:120 , MET O:123 , LYS O:124 , TYR O:136 , ALA O:200 , SER O:203 , ILE O:207 , CLA O:601 , DGD O:615 , HOH O:638 , HOH O:644 , HOH O:645BINDING SITE FOR RESIDUE PID O 611
28DC1SOFTWARELEU M:292 , HOH M:765 , DGD N:625 , PHE O:28 , PRO O:32 , LYS O:118 , VAL O:119 , TYR O:122 , MET O:123 , MET O:210 , CLA O:601 , DGD O:615 , PID O:622 , PID O:623BINDING SITE FOR RESIDUE PID O 612
29DC2SOFTWAREMET O:47 , VAL O:104 , MET O:105 , VAL O:107 , TYR O:108 , LYS O:143 , LEU O:222 , CLA O:601 , PID O:614 , DGD O:615 , PID O:622BINDING SITE FOR RESIDUE PID O 613
30DC3SOFTWARETRP O:23 , ILE O:73 , GLY O:78 , VAL O:79 , THR O:80 , TRP O:85 , ASN O:89 , LEU O:92 , GLU O:101 , PHE O:139 , GLN O:150 , GLN O:201 , LEU O:204 , CLA O:601 , PID O:613BINDING SITE FOR RESIDUE PID O 614
31DC4SOFTWAREDGD N:625 , LEU O:35 , PRO O:37 , ALA O:40 , PHE O:180 , ILE O:184 , TRP O:186 , TYR O:191 , MET O:192 , PRO O:282 , MET O:285 , PHE O:286 , ALA O:298 , CLA O:602 , HOH O:649 , HOH O:677 , HOH O:678 , HOH O:711 , HOH O:719BINDING SITE FOR RESIDUE PID O 621
32DC5SOFTWARELEU M:283 , DGD N:625 , ILE O:44 , MET O:47 , VAL O:190 , TYR O:191 , LYS O:193 , ILE O:281 , ASN O:284 , MET O:285 , CLA O:602 , PID O:613 , DGD O:615 , HOH O:632BINDING SITE FOR RESIDUE PID O 622
33DC6SOFTWAREDGD N:625 , LEU O:59 , MET O:210 , GLY O:214 , VAL O:266 , TYR O:270 , TYR O:302 , CLA O:602 , PID O:624 , HOH O:717BINDING SITE FOR RESIDUE PID O 623
34DC7SOFTWARETRP O:186 , GLY O:240 , VAL O:241 , THR O:242 , ASN O:251 , LEU O:254 , PHE O:301 , VAL O:308 , GLN O:312 , CLA O:602 , PID O:623 , HOH O:744BINDING SITE FOR RESIDUE PID O 624
35DC8SOFTWARETYR O:108 , SER O:112 , PRO O:120 , GLU O:133 , TYR O:136 , GLU O:137 , CLA O:601 , PID O:611 , PID O:613 , PID O:622BINDING SITE FOR RESIDUE DGD O 615
36DC9SOFTWAREASP N:22 , ASN N:24 , ASN N:25 , GLY N:26 , HOH N:627 , HOH N:758 , HOH N:760 , HOH N:762 , TYR O:270 , MET O:273 , THR O:277 , PRO O:282 , ASN O:295 , ALA O:298 , LYS O:299 , TYR O:302 , CLA O:602 , PID O:621 , PID O:622 , PID O:623 , HOH O:677 , HOH O:717BINDING SITE FOR RESIDUE DGD N 625

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PPR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1PPR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PPR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1PPR)

(-) Exons   (0, 0)

(no "Exon" information available for 1PPR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain M from PDB  Type:PROTEIN  Length:312
 aligned with PCP1_AMPCA | P80484 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367  
           PCP1_AMPCA    58 DEIGDAAKKLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSVSGPNGVTSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVSGADAEKAYEGFLAFKDVVKKSQVTSAAGPATVPSGDKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAAVNAALGRVIASVPKSTVMDVYNAMAGATDTSIPLNMFSKVNPLDANAAAKAFYTFKDVVQAAQ 369
               SCOP domains d1pprm1 M:1-156 Peridinin-chlorophyll protein                                                                                                               d1pprm2 M:157-312 Peridinin-chlorophyll protein                                                                                                              SCOP domains
               CATH domains 1pprM01 M:1-155 Peridinin-chlorophyll Protein, Chain M                                                                                                     1pprM02 M:156-312 Peridinin-chlorophyll Protein, Chain M                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.....hhhh.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh......hhh.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ppr M   1 DEIGDAAKKLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSISGPNGVTSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVNGADAEKAYEGFLAFKDVVKKSQVTSAAGPATVPSGDKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAAVNAALGRVIASVPKSTVMDVYNAMAGVTDTSIPLNMFSKVNPLDANAAAKAFYTFKDVVQAAQ 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  


Chain N from PDB  Type:PROTEIN  Length:312
 aligned with PCP1_AMPCA | P80484 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367  
           PCP1_AMPCA    58 DEIGDAAKKLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSVSGPNGVTSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVSGADAEKAYEGFLAFKDVVKKSQVTSAAGPATVPSGDKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAAVNAALGRVIASVPKSTVMDVYNAMAGATDTSIPLNMFSKVNPLDANAAAKAFYTFKDVVQAAQ 369
               SCOP domains d1pprn1 N:1-156 Peridinin-chlorophyll protein                                                                                                               d1pprn2 N:157-312 Peridinin-chlorophyll protein                                                                                                              SCOP domains
               CATH domains 1pprN01 N:1-155 Peridinin-chlorophyll Protein, Chain M                                                                                                     1pprN02 N:156-312 Peridinin-chlorophyll Protein, Chain M                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.....hhhh.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh......hhh.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ppr N   1 DEIGDAAKKLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSISGPNGVTSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVNGADAEKAYEGFLAFKDVVKKSQVTSAAGPATVPSGDKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAAVNAALGRVIASVPKSTVMDVYNAMAGVTDTSIPLNMFSKVNPLDANAAAKAFYTFKDVVQAAQ 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  


Chain O from PDB  Type:PROTEIN  Length:312
 aligned with PCP1_AMPCA | P80484 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367  
           PCP1_AMPCA    58 DEIGDAAKKLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSVSGPNGVTSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVSGADAEKAYEGFLAFKDVVKKSQVTSAAGPATVPSGDKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAAVNAALGRVIASVPKSTVMDVYNAMAGATDTSIPLNMFSKVNPLDANAAAKAFYTFKDVVQAAQ 369
               SCOP domains d1ppro1 O:1-156 Peridinin-chlorophyll protein                                                                                                               d1ppro2 O:157-312 Peridinin-chlorophyll protein                                                                                                              SCOP domains
               CATH domains 1pprO01 O:1-155 Peridinin-chlorophyll Protein, Chain M                                                                                                     1pprO02 O:156-312 Peridinin-chlorophyll Protein, Chain M                                                                                                      CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------PCP-1pprO01 O:164-308                                                                                                                            ---- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------PCP-1pprO02 O:164-308                                                                                                                            ---- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------------------PCP-1pprO03 O:164-308                                                                                                                            ---- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------------------PCP-1pprO04 O:164-308                                                                                                                            ---- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------------------------------------------------------------------------------------------------------PCP-1pprO05 O:164-308                                                                                                                            ---- Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------------------------------------------------------------------------------------------------------PCP-1pprO06 O:164-308                                                                                                                            ---- Pfam domains (6)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.....hhhh.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh......hhh.......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ppr O   1 DEIGDAAKKLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVMGAAADPKLLKAAAEAHHKAIGSISGPNGVTSRADWDNVNAALGRVIASVPENMVMDVYDSVSKITDPKVPAYMKSLVNGADAEKAYEGFLAFKDVVKKSQVTSAAGPATVPSGDKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSAQQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAAVNAALGRVIASVPKSTVMDVYNAMAGVTDTSIPLNMFSKVNPLDANAAAKAFYTFKDVVQAAQ 312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: PCP] (3)
(-)
Family: PCP (3)
(-)
Amphidinium carterae (Dinoflagellate) (3)
1aPCP-1pprO01O:164-308
1bPCP-1pprO02O:164-308
1cPCP-1pprO03O:164-308
1dPCP-1pprO04O:164-308
1ePCP-1pprO05O:164-308
1fPCP-1pprO06O:164-308

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain M,N,O   (PCP1_AMPCA | P80484)
molecular function
    GO:0016168    chlorophyll binding    Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
biological process
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0030076    light-harvesting complex    A protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
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  ribbon, secondary structure; CPD: spacefill, trimer
[ mono GIF format | stereo GIF format ]
  spacefill; CPD: sticks, monomer
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  secondary structure; CPD: spacefill, monomer
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  ribbon, secondary structure; CPD: spacefill, monomer
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  ribbon, secondary structure; CPD: dot surface, trimer
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  ribbon, labeling; CPD: spacefill, monomer
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  ribbon, labeling; CPD: spacefill, monomer
[ mono GIF format | stereo GIF format ]
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Distance Plot
  representative atom: CA, trimer
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  representative atom: CA, monomer (chain M)
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  1ppr
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  PCP1_AMPCA | P80484
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PCP1_AMPCA | P80484: 2x1z 2x20 2x21 3iis 3iiu

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1PPR)