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1PPR
Asym. Unit
Info
Asym.Unit (202 KB)
Biol.Unit 1 (185 KB)
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(1)
Title
:
PERIDININ-CHLOROPHYLL-PROTEIN OF AMPHIDINIUM CARTERAE
Authors
:
E. Hofmann, W. Welte, K. Diederichs
Date
:
06 Mar 96 (Deposition) - 20 Aug 97 (Release) - 17 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : M,N,O
Biol. Unit 1: M,N,O (1x)
Keywords
:
Light Harvesting Protein, Photosynthesis, Carotenoids, Dinoflagellates, Light-Harvesting Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Hofmann, P. M. Wrench, F. P. Sharples, R. G. Hiller, W. Welte, K. Diederichs
Structural Basis Of Light Harvesting By Carotenoids: Peridinin-Chlorophyll-Protein From Amphidinium Carterae.
Science V. 272 1788 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 36)
Info
All Hetero Components
1a: CHLOROPHYLL A (CLAa)
1b: CHLOROPHYLL A (CLAb)
1c: CHLOROPHYLL A (CLAc)
1d: CHLOROPHYLL A (CLAd)
1e: CHLOROPHYLL A (CLAe)
1f: CHLOROPHYLL A (CLAf)
2a: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDa)
2b: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDb)
2c: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDc)
2d: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDd)
2e: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDe)
2f: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDf)
3a: PERIDININ (PIDa)
3b: PERIDININ (PIDb)
3c: PERIDININ (PIDc)
3d: PERIDININ (PIDd)
3e: PERIDININ (PIDe)
3f: PERIDININ (PIDf)
3g: PERIDININ (PIDg)
3h: PERIDININ (PIDh)
3i: PERIDININ (PIDi)
3j: PERIDININ (PIDj)
3k: PERIDININ (PIDk)
3l: PERIDININ (PIDl)
3m: PERIDININ (PIDm)
3n: PERIDININ (PIDn)
3o: PERIDININ (PIDo)
3p: PERIDININ (PIDp)
3q: PERIDININ (PIDq)
3r: PERIDININ (PIDr)
3s: PERIDININ (PIDs)
3t: PERIDININ (PIDt)
3u: PERIDININ (PIDu)
3v: PERIDININ (PIDv)
3w: PERIDININ (PIDw)
3x: PERIDININ (PIDx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CLA
6
Ligand/Ion
CHLOROPHYLL A
2
DGD
6
Ligand/Ion
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
3
PID
24
Ligand/Ion
PERIDININ
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA M:62 , ALA M:63 , HIS M:66 , ALA M:132 , ILE M:211 , PID M:611 , PID M:612 , PID M:613 , PID M:614 , DGD M:615 , HOH M:701
BINDING SITE FOR RESIDUE CLA M 601
02
AC2
SOFTWARE
ILE M:184 , ALA M:225 , HIS M:229 , TYR M:247 , PID M:621 , PID M:622 , PID M:623 , PID M:624 , HOH M:678 , DGD O:625
BINDING SITE FOR RESIDUE CLA M 602
03
AC3
SOFTWARE
PHE M:17 , TRP M:23 , PHE M:28 , LEU M:29 , PRO M:120 , MET M:123 , LYS M:124 , TYR M:136 , ALA M:200 , SER M:203 , ILE M:207 , CLA M:601 , DGD M:615 , HOH M:630 , HOH M:636 , HOH M:637
BINDING SITE FOR RESIDUE PID M 611
04
AC4
SOFTWARE
PHE M:28 , LYS M:118 , VAL M:119 , TYR M:122 , MET M:123 , CLA M:601 , DGD M:615 , PID M:622 , PID M:623 , LEU N:292 , HOH N:626 , DGD O:625
BINDING SITE FOR RESIDUE PID M 612
05
AC5
SOFTWARE
MET M:47 , VAL M:104 , MET M:105 , VAL M:107 , TYR M:108 , LYS M:143 , LEU M:222 , CLA M:601 , PID M:614 , DGD M:615 , PID M:622
BINDING SITE FOR RESIDUE PID M 613
06
AC6
SOFTWARE
TRP M:23 , ILE M:73 , GLY M:78 , VAL M:79 , THR M:80 , TRP M:85 , ASN M:89 , LEU M:92 , GLU M:101 , PHE M:139 , GLN M:150 , GLN M:201 , LEU M:204 , CLA M:601 , PID M:613
BINDING SITE FOR RESIDUE PID M 614
07
AC7
SOFTWARE
LEU M:35 , PRO M:37 , ALA M:40 , PHE M:180 , ILE M:184 , TRP M:186 , TYR M:191 , PRO M:282 , MET M:285 , PHE M:286 , CLA M:602 , HOH M:641 , HOH M:670 , HOH M:671 , HOH M:704 , HOH M:712 , DGD O:625
BINDING SITE FOR RESIDUE PID M 621
08
AC8
SOFTWARE
ILE M:44 , MET M:47 , VAL M:190 , TYR M:191 , LYS M:193 , ILE M:281 , ASN M:284 , MET M:285 , CLA M:602 , PID M:612 , PID M:613 , DGD M:615 , LEU N:283 , DGD O:625 , HOH O:632
BINDING SITE FOR RESIDUE PID M 622
09
AC9
SOFTWARE
LEU M:59 , MET M:210 , GLY M:214 , VAL M:266 , TYR M:270 , TYR M:302 , CLA M:602 , PID M:612 , PID M:624 , HOH M:710 , DGD O:625
BINDING SITE FOR RESIDUE PID M 623
10
BC1
SOFTWARE
TRP M:186 , GLY M:240 , VAL M:241 , THR M:242 , ASN M:251 , LEU M:254 , PHE M:301 , VAL M:308 , GLN M:312 , CLA M:602 , PID M:623 , HOH M:737
BINDING SITE FOR RESIDUE PID M 624
11
BC2
SOFTWARE
TYR M:108 , SER M:112 , PRO M:120 , GLU M:133 , TYR M:136 , GLU M:137 , CLA M:601 , PID M:611 , PID M:612 , PID M:613 , PID M:622
BINDING SITE FOR RESIDUE DGD M 615
12
BC3
SOFTWARE
TYR M:270 , MET M:273 , THR M:277 , PRO M:282 , ASN M:295 , ALA M:298 , LYS M:299 , TYR M:302 , CLA M:602 , PID M:612 , PID M:621 , PID M:622 , PID M:623 , HOH M:670 , HOH M:710 , ASP O:22 , ASN O:24 , ASN O:25 , GLY O:26 , HOH O:627 , HOH O:629 , HOH O:631 , HOH O:635
BINDING SITE FOR RESIDUE DGD O 625
13
BC4
SOFTWARE
ALA N:62 , ALA N:63 , HIS N:66 , ALA N:132 , PHE N:139 , ILE N:211 , PID N:611 , PID N:612 , PID N:613 , PID N:614 , DGD N:615 , HOH N:699
BINDING SITE FOR RESIDUE CLA N 601
14
BC5
SOFTWARE
DGD M:625 , ILE N:184 , ALA N:225 , HIS N:229 , TYR N:247 , PID N:621 , PID N:622 , PID N:623 , PID N:624 , HOH N:677
BINDING SITE FOR RESIDUE CLA N 602
15
BC6
SOFTWARE
PHE N:17 , TRP N:23 , PHE N:28 , LEU N:29 , PRO N:120 , MET N:123 , LYS N:124 , TYR N:136 , ALA N:200 , SER N:203 , ILE N:207 , CLA N:601 , DGD N:615 , HOH N:630 , HOH N:636 , HOH N:637
BINDING SITE FOR RESIDUE PID N 611
16
BC7
SOFTWARE
PHE N:28 , ALA N:31 , PRO N:32 , LYS N:118 , VAL N:119 , TYR N:122 , MET N:123 , CLA N:601 , DGD N:615 , PID N:622 , PID N:623 , LEU O:292 , HOH O:634
BINDING SITE FOR RESIDUE PID N 612
17
BC8
SOFTWARE
MET N:47 , VAL N:104 , MET N:105 , VAL N:107 , TYR N:108 , LYS N:143 , LEU N:222 , CLA N:601 , PID N:614 , DGD N:615 , PID N:622
BINDING SITE FOR RESIDUE PID N 613
18
BC9
SOFTWARE
TRP N:23 , ILE N:73 , GLY N:78 , VAL N:79 , THR N:80 , TRP N:85 , ASN N:89 , LEU N:92 , GLU N:101 , PHE N:139 , LYS N:143 , GLN N:150 , GLN N:201 , LEU N:204 , CLA N:601 , PID N:613
BINDING SITE FOR RESIDUE PID N 614
19
CC1
SOFTWARE
DGD M:625 , LEU N:35 , PRO N:37 , ALA N:40 , PHE N:180 , ILE N:184 , TRP N:186 , TYR N:191 , PRO N:282 , MET N:285 , PHE N:286 , ALA N:298 , CLA N:602 , HOH N:641 , HOH N:669 , HOH N:670 , HOH N:702 , HOH N:710
BINDING SITE FOR RESIDUE PID N 621
20
CC2
SOFTWARE
DGD M:625 , ILE N:44 , MET N:47 , VAL N:190 , TYR N:191 , LYS N:193 , ILE N:281 , ASN N:284 , MET N:285 , CLA N:602 , PID N:612 , PID N:613 , DGD N:615 , LEU O:283 , HOH O:632
BINDING SITE FOR RESIDUE PID N 622
21
CC3
SOFTWARE
DGD M:625 , LEU N:59 , MET N:210 , GLY N:214 , VAL N:266 , TYR N:270 , TYR N:302 , CLA N:602 , PID N:612 , PID N:624 , HOH N:708
BINDING SITE FOR RESIDUE PID N 623
22
CC4
SOFTWARE
TRP N:186 , GLY N:240 , VAL N:241 , THR N:242 , ASN N:251 , LEU N:254 , PHE N:301 , LYS N:305 , VAL N:308 , GLN N:312 , CLA N:602 , PID N:623 , HOH N:735
BINDING SITE FOR RESIDUE PID N 624
23
CC5
SOFTWARE
TYR N:108 , SER N:112 , PRO N:120 , GLU N:133 , TYR N:136 , GLU N:137 , CLA N:601 , PID N:611 , PID N:612 , PID N:613 , PID N:622
BINDING SITE FOR RESIDUE DGD N 615
24
CC6
SOFTWARE
ASP M:22 , ASN M:24 , ASN M:25 , GLY M:26 , HOH M:627 , HOH M:760 , HOH M:762 , HOH M:764 , TYR N:270 , MET N:273 , THR N:277 , PRO N:282 , ASN N:295 , ALA N:298 , LYS N:299 , TYR N:302 , CLA N:602 , PID N:621 , PID N:622 , PID N:623 , HOH N:669 , HOH N:708
BINDING SITE FOR RESIDUE DGD M 625
25
CC7
SOFTWARE
ALA O:62 , ALA O:63 , HIS O:66 , ALA O:132 , PHE O:139 , ILE O:211 , PID O:611 , PID O:613 , PID O:614 , DGD O:615 , HOH O:708
BINDING SITE FOR RESIDUE CLA O 601
26
CC8
SOFTWARE
DGD N:625 , ILE O:184 , ALA O:225 , HIS O:229 , TYR O:247 , PID O:621 , PID O:622 , PID O:623 , PID O:624 , HOH O:685
BINDING SITE FOR RESIDUE CLA O 602
27
CC9
SOFTWARE
PHE O:17 , TRP O:23 , PHE O:28 , LEU O:29 , PRO O:120 , MET O:123 , LYS O:124 , TYR O:136 , ALA O:200 , SER O:203 , ILE O:207 , CLA O:601 , DGD O:615 , HOH O:638 , HOH O:644 , HOH O:645
BINDING SITE FOR RESIDUE PID O 611
28
DC1
SOFTWARE
LEU M:292 , HOH M:765 , DGD N:625 , PHE O:28 , PRO O:32 , LYS O:118 , VAL O:119 , TYR O:122 , MET O:123 , MET O:210 , CLA O:601 , DGD O:615 , PID O:622 , PID O:623
BINDING SITE FOR RESIDUE PID O 612
29
DC2
SOFTWARE
MET O:47 , VAL O:104 , MET O:105 , VAL O:107 , TYR O:108 , LYS O:143 , LEU O:222 , CLA O:601 , PID O:614 , DGD O:615 , PID O:622
BINDING SITE FOR RESIDUE PID O 613
30
DC3
SOFTWARE
TRP O:23 , ILE O:73 , GLY O:78 , VAL O:79 , THR O:80 , TRP O:85 , ASN O:89 , LEU O:92 , GLU O:101 , PHE O:139 , GLN O:150 , GLN O:201 , LEU O:204 , CLA O:601 , PID O:613
BINDING SITE FOR RESIDUE PID O 614
31
DC4
SOFTWARE
DGD N:625 , LEU O:35 , PRO O:37 , ALA O:40 , PHE O:180 , ILE O:184 , TRP O:186 , TYR O:191 , MET O:192 , PRO O:282 , MET O:285 , PHE O:286 , ALA O:298 , CLA O:602 , HOH O:649 , HOH O:677 , HOH O:678 , HOH O:711 , HOH O:719
BINDING SITE FOR RESIDUE PID O 621
32
DC5
SOFTWARE
LEU M:283 , DGD N:625 , ILE O:44 , MET O:47 , VAL O:190 , TYR O:191 , LYS O:193 , ILE O:281 , ASN O:284 , MET O:285 , CLA O:602 , PID O:613 , DGD O:615 , HOH O:632
BINDING SITE FOR RESIDUE PID O 622
33
DC6
SOFTWARE
DGD N:625 , LEU O:59 , MET O:210 , GLY O:214 , VAL O:266 , TYR O:270 , TYR O:302 , CLA O:602 , PID O:624 , HOH O:717
BINDING SITE FOR RESIDUE PID O 623
34
DC7
SOFTWARE
TRP O:186 , GLY O:240 , VAL O:241 , THR O:242 , ASN O:251 , LEU O:254 , PHE O:301 , VAL O:308 , GLN O:312 , CLA O:602 , PID O:623 , HOH O:744
BINDING SITE FOR RESIDUE PID O 624
35
DC8
SOFTWARE
TYR O:108 , SER O:112 , PRO O:120 , GLU O:133 , TYR O:136 , GLU O:137 , CLA O:601 , PID O:611 , PID O:613 , PID O:622
BINDING SITE FOR RESIDUE DGD O 615
36
DC9
SOFTWARE
ASP N:22 , ASN N:24 , ASN N:25 , GLY N:26 , HOH N:627 , HOH N:758 , HOH N:760 , HOH N:762 , TYR O:270 , MET O:273 , THR O:277 , PRO O:282 , ASN O:295 , ALA O:298 , LYS O:299 , TYR O:302 , CLA O:602 , PID O:621 , PID O:622 , PID O:623 , HOH O:677 , HOH O:717
BINDING SITE FOR RESIDUE DGD N 625
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1pprm1 (M:1-156)
1b: SCOP_d1pprm2 (M:157-312)
1c: SCOP_d1pprn1 (N:1-156)
1d: SCOP_d1pprn2 (N:157-312)
1e: SCOP_d1ppro1 (O:1-156)
1f: SCOP_d1ppro2 (O:157-312)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Peridinin-chlorophyll protein
(1)
Superfamily
:
Peridinin-chlorophyll protein
(1)
Family
:
Peridinin-chlorophyll protein
(1)
Protein domain
:
Peridinin-chlorophyll protein
(1)
Dinoflagellate (Amphidinium carterae) [TaxId: 2961]
(1)
1a
d1pprm1
M:1-156
1b
d1pprm2
M:157-312
1c
d1pprn1
N:1-156
1d
d1pprn2
N:157-312
1e
d1ppro1
O:1-156
1f
d1ppro2
O:157-312
[
close SCOP info
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1pprM01 (M:1-155)
1b: CATH_1pprN01 (N:1-155)
1c: CATH_1pprO01 (O:1-155)
1d: CATH_1pprM02 (M:156-312)
1e: CATH_1pprN02 (N:156-312)
1f: CATH_1pprO02 (O:156-312)
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Homologous Superfamilies
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha solenoid
(1)
Topology
:
Peridinin-chlorophyll Protein, Chain M
(1)
Homologous Superfamily
:
Peridinin-chlorophyll Protein, Chain M
(1)
Amphidinium carterae. Organism_taxid: 2961. Strain: cs-21
(1)
1a
1pprM01
M:1-155
1b
1pprN01
N:1-155
1c
1pprO01
O:1-155
1d
1pprM02
M:156-312
1e
1pprN02
N:156-312
1f
1pprO02
O:156-312
[
close CATH info
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_PCP_1pprO01 (O:164-308)
1b: PFAM_PCP_1pprO02 (O:164-308)
1c: PFAM_PCP_1pprO03 (O:164-308)
1d: PFAM_PCP_1pprO04 (O:164-308)
1e: PFAM_PCP_1pprO05 (O:164-308)
1f: PFAM_PCP_1pprO06 (O:164-308)
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Clan
:
no clan defined [family: PCP]
(3)
Family
:
PCP
(3)
Amphidinium carterae (Dinoflagellate)
(3)
1a
PCP-1pprO01
O:164-308
1b
PCP-1pprO02
O:164-308
1c
PCP-1pprO03
O:164-308
1d
PCP-1pprO04
O:164-308
1e
PCP-1pprO05
O:164-308
1f
PCP-1pprO06
O:164-308
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