1P0Y - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE SET DOMAIN OF LSMT BOUND TO MELYSINE AND ADOHCY

Authors :   R. C. Trievel, E. M. Flynn, R. L. Houtz, J. H. Hurley

Date :   11 Apr 03 (Deposition) - 01 Jul 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.55

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Set Domain, Lysine N-Methylation, Multiple Methylation, Photosynthesis, Post-Translational Modification, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. C. Trievel, E. M. Flynn, R. L. Houtz, J. H. Hurley
Mechanism Of Multiple Lysine Methylation By The Set Domain Enzyme Rubisco Lsmt
Nat. Struct. Biol. V. 10 545 2003
PubMed-ID: 12819771 | Reference-DOI: 10.1038/NSB946
(for further references see the PDB file header)

Molecule 1 - RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE LARGE SUBUNIT N-METHYLTRANSFERASE, CHLOROPLAST
	Chains	:	A, B, C
	EC Number	:	2.1.1.127
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PDEST14
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Organism Common	:	PEA
	Organism Scientific	:	PISUM SATIVUM
	Organism Taxid	:	3888
	Synonym	:	[RIBULOSE-BISPHOSPHATE-CARBOXYLASE]-LYSINE N- METHYLTRANSFERASE, RUBISCO METHYLTRANSFERASE, RUBISCO LSMT, RBCMT

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	MLZ	3	Mod. Residue	N-METHYL-LYSINE
2	SAH	3	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	MLZ	-1	Mod. Residue	N-METHYL-LYSINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	MLZ	-1	Mod. Residue	N-METHYL-LYSINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 3 (2, 4)

No.	Name	Count	Type	Full Name
1	MLZ	3	Mod. Residue	N-METHYL-LYSINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:80 , GLY A:81 , LEU A:82 , SER A:221 , ARG A:222 , ASP A:239 , ASN A:242 , HIS A:243 , TYR A:287 , TYR A:300 , GLY A:301 , PHE A:302 , HOH A:803 , HOH A:825 , HOH A:858 , HOH A:867 , HOH A:982 , HOH A:997 , MLZ C:900	BINDING SITE FOR RESIDUE SAH A 800
2	AC2	SOFTWARE	GLU B:80 , LEU B:82 , SER B:221 , ARG B:222 , ASP B:239 , LEU B:240 , ILE B:241 , ASN B:242 , HIS B:243 , TYR B:287 , TYR B:300 , GLY B:301 , PHE B:302 , HOH B:802 , HOH B:804 , HOH B:811 , HOH B:908 , HOH B:909 , PHE C:263 , HOH C:935	BINDING SITE FOR RESIDUE SAH B 801
3	AC3	SOFTWARE	GLU C:80 , LEU C:82 , SER C:221 , ARG C:222 , ASP C:239 , LEU C:240 , ASN C:242 , HIS C:243 , TYR C:287 , TYR C:300 , GLY C:301 , PHE C:302 , MLZ C:902 , HOH C:904 , HOH C:909 , HOH C:954 , HOH C:1097	BINDING SITE FOR RESIDUE SAH C 802
4	AC4	SOFTWARE	ARG A:222 , PHE A:224 , SER A:225 , ARG A:226 , ASP A:239 , TYR A:254 , TYR A:287 , TYR A:300 , SAH A:800 , HOH A:990 , HOH C:996	BINDING SITE FOR RESIDUE MLZ C 900
5	AC5	SOFTWARE	ARG B:222 , PHE B:224 , SER B:225 , ARG B:226 , ASP B:239 , ILE B:241 , HIS B:252 , TYR B:287 , HOH C:906 , HOH C:916	BINDING SITE FOR RESIDUE MLZ C 901
6	AC6	SOFTWARE	SER C:221 , ARG C:222 , ALA C:223 , PHE C:224 , SER C:225 , ARG C:226 , ASP C:239 , ILE C:241 , TYR C:254 , TYR C:287 , LYS C:291 , TYR C:300 , SAH C:802 , HOH C:1062 , HOH C:1067	BINDING SITE FOR RESIDUE MLZ C 902

(no "SS Bond" information available for 1P0Y)

(no "Cis Peptide Bond" information available for 1P0Y)

(no "SAP(SNP)/Variant" information available for 1P0Y)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	3	A:64-288 B:64-288 C:64-288

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	1	A:64-288 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	1	- B:64-288 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	1	- - C:64-288

(no "Exon" information available for 1P0Y)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:430
 aligned with RBCMT_PEA | Q43088 from UniProtKB/Swiss-Prot  Length:489

    Alignment length:438
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        
            RBCMT_PEA    49 SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILGDLG 486
               SCOP domains d1p0ya2 A:49-310 RuBisCo LSMT catalytic domain                                                                                                                                                                                                                        d1p0ya1 A:311-486 RuBisCo LSMT C-terminal, substrate-binding domain                                                                                                              SCOP domains
               CATH domains 1p0yA01 A:49-303 set domain protein methyltransferase, domain 1                                                                                                                                                                                                1p0yA02 A:304-468 set domain protein methyltransferase, domain 2                                                                                                     ------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...........eeeeee..eeeeee........eee..hhhhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhh......................hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.............hhhhhee..........eee.--------...eeee...........ee......hhhhhhhhh.....hhhh.eeeeeee......hhhhhhhhhhhh....eeeeeee.......hhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh........hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------SET  PDB: A:64-288 UniProt: 64-288                                                                                                                                                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1p0y A  49 SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVK--------DYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENLY 486
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248        |-       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478        
                                                                                                                                                                                                                                          257      266

Chain B from PDB  Type:PROTEIN  Length:441
 aligned with RBCMT_PEA | Q43088 from UniProtKB/Swiss-Prot  Length:489

    Alignment length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   489 
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487 | 
            RBCMT_PEA    48 PSLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF-   -
               SCOP domains d1p0yb2 B:48-310 RuBisCo LSMT catalytic domain                                                                                                                                                                                                                         d1p0yb1 B:311-488 RuBisCo LSMT C-terminal, substrate-binding domain                                                                                                                  SCOP domains
               CATH domains 1p0yB01 B:48-303 set domain protein methyltransferase, domain 1                                                                                                                                                                                                 1p0yB02 B:304-468 set domain protein methyltransferase, domain 2                                                                                                     ---------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh........eeeeee..eeeeee........eeeeee.hhh.hhhhhhh..........hhhhhhhhhhhhhhhh....hhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.............hhhhhee.........eeeehhhhh.hhhh.eeeee...........ee......hhhhhhhhh.....hhhh.eeeeeee......hhhhhhhhhhhh....eeeeeee.......hhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh.....hhhhhhhh--hh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------SET  PDB: B:64-288 UniProt: 64-288                                                                                                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1p0y B  48 PSLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENL--YFQ 488
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       | -|  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               485  |  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  486

Chain C from PDB  Type:PROTEIN  Length:439
 aligned with RBCMT_PEA | Q43088 from UniProtKB/Swiss-Prot  Length:489

    Alignment length:441
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488 
            RBCMT_PEA    49 SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF 489
               SCOP domains d1p0yc2 C:49-310 RuBisCo LSMT catalytic domain                                                                                                                                                                                                                        d1p0yc1 C:311-487 RuBisCo LSMT C-terminal, substrate-binding domain                                                                                                                 SCOP domains
               CATH domains 1p0yC01 C:49-303 set domain protein methyltransferase, domain 1                                                                                                                                                                                                1p0yC02 C:304-468 set domain protein methyltransferase, domain 2                                                                                                     --------------------- CATH domains
           Pfam domains (1) --------------------------------SET-1p0yC04 C:81-288                                                                                                                                                                                            -----------------------------Rubis-subs-bind-1p0yC01 C:318-444                                                                                              --------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------------------SET-1p0yC05 C:81-288                                                                                                                                                                                            -----------------------------Rubis-subs-bind-1p0yC02 C:318-444                                                                                              --------------------------------------------- Pfam domains (2)
           Pfam domains (3) --------------------------------SET-1p0yC06 C:81-288                                                                                                                                                                                            -----------------------------Rubis-subs-bind-1p0yC03 C:318-444                                                                                              --------------------------------------------- Pfam domains (3)
         Sec.struct. author ..hhhhhhhhhhhhhh........eeeeee..eeeeee........eeeeee.hhh.hhhhhhh..........hhhhhhhhhhhhhhhh....hhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.............hhhhhee..........eeeee....hhh.eeeeee...........ee......hhhhhhhhh.....hhhh.eeeeeee......hhhhhhhhhhhh....eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh.........hhhhhh.--.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------SET  PDB: C:64-288 UniProt: 64-288                                                                                                                                                                                               --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1p0y C  49 SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENL--YF 487
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478      |486 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              485  | 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 486

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: set domain protein methyltransferase, domain 1 (7)

Homologous Superfamily: set domain protein methyltransferase, domain 1 (7)

Pea (Pisum sativum) (7)

1a	1p0yA01	A:49-303
1b	1p0yC01	C:49-303
1c	1p0yB01	B:48-303

Topology: set domain protein methyltransferase, domain 2 (7)

Homologous Superfamily: set domain protein methyltransferase, domain 2 (7)

Pea (Pisum sativum) (7)

2a	1p0yA02	A:304-468
2b	1p0yB02	B:304-468
2c	1p0yC02	C:304-468

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Rubis-subs-bind] (5)

Family: Rubis-subs-bind (5)

Pisum sativum (Garden pea) (3)

1a	Rubis-subs-bind-1p0yC01	C:318-444
1b	Rubis-subs-bind-1p0yC02	C:318-444
1c	Rubis-subs-bind-1p0yC03	C:318-444

Clan: no clan defined [family: SET] (46)

Family: SET (46)

Pisum sativum (Garden pea) (3)

2a	SET-1p0yC04	C:81-288
2b	SET-1p0yC05	C:81-288
2c	SET-1p0yC06	C:81-288

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (RBCMT_PEA | Q43088)

molecular function
	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Asymmetric Unit
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	1p0y
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	2.1.1.127
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	RBCMT_PEA \| Q43088	:	1mlv 1ozv 2h21 2h23 2h2e 2h2j

1mlv	STRUCTURE AND CATALYTIC MECHANISM OF A SET DOMAIN PROTEIN METHYLTRANSFERASE
1ozv	CRYSTAL STRUCTURE OF THE SET DOMAIN OF LSMT BOUND TO LYSINE AND ADOHCY

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 6)

CATH Domains (2, 6)

Pfam Domains (2, 6)

Gene Ontology (6, 6)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File