1MLV - JenaLib

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Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   STRUCTURE AND CATALYTIC MECHANISM OF A SET DOMAIN PROTEIN METHYLTRANSFERASE

Authors :   R. C. Trievel, B. M. Beach, L. M. A. Dirk, R. L. Houtz, J. H. Hurley

Date :   30 Aug 02 (Deposition) - 30 Oct 02 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: A,B,C  (1x)
Biol. Unit 5: A,B,C  (2x)

Keywords :   Set Domain, Lysine N-Methylation, Photosynthesis, Post-Translational Modification, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. C. Trievel, B. M. Beach, L. M. Dirk, R. L. Houtz, J. H. Hurley
Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase.
Cell(Cambridge, Mass. ) V. 111 91 2002
PubMed-ID: 12372303 | Reference-DOI: 10.1016/S0092-8674(02)01000-0

Molecule 1 - RIBULOSE-1,5 BIPHOSPHATE CARBOXYLASE/OXYGENASE LARGE SUBUNIT N-METHYLTRANSFERASE
	Chains	:	A, B, C
	EC Number	:	2.1.1.127
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PDEST14
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 46-482
	Organism Common	:	PEA
	Organism Scientific	:	PISUM SATIVUM
	Organism Taxid	:	3888
	Synonym	:	[RIBULOSE-BIPHOSPHATE-CARBOXYLASE]-LYSINE N- METHYLTRANSFERASE, RUBISCO METHYLTRANSFERASE, RUBISCO LSMT, RBCMT

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:	A	B	C
Biological Unit 5 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	EPE	3	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	SAH	3	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 4 (2, 6)

No.	Name	Count	Type	Full Name
1	EPE	3	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	SAH	3	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 5 (2, 12)

No.	Name	Count	Type	Full Name
1	EPE	6	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2	SAH	6	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:80 , GLY A:81 , LEU A:82 , PRO A:151 , SER A:221 , ARG A:222 , LEU A:240 , ILE A:241 , ASN A:242 , HIS A:243 , TYR A:287 , TYR A:300 , EPE A:800 , HOH A:805 , HOH A:860 , HOH A:868 , HOH A:911	BINDING SITE FOR RESIDUE SAH A 700
2	AC2	SOFTWARE	GLU B:80 , GLY B:81 , LEU B:82 , PRO B:151 , SER B:221 , ARG B:222 , ASP B:239 , LEU B:240 , ILE B:241 , ASN B:242 , HIS B:243 , TYR B:287 , TYR B:300 , GLY B:301 , PHE B:302 , EPE B:801 , HOH B:804 , HOH B:807 , HOH B:808 , HOH B:825 , HOH B:905 , HOH B:951 , PHE C:263	BINDING SITE FOR RESIDUE SAH B 701
3	AC3	SOFTWARE	GLU C:80 , GLY C:81 , LEU C:82 , PRO C:151 , ARG C:222 , LEU C:240 , ILE C:241 , ASN C:242 , HIS C:243 , TYR C:287 , TYR C:300 , GLY C:301 , PHE C:302 , EPE C:802 , HOH C:812 , HOH C:826 , HOH C:846 , HOH C:944 , HOH C:999	BINDING SITE FOR RESIDUE SAH C 702
4	AC4	SOFTWARE	SER A:221 , ARG A:222 , PHE A:224 , SER A:225 , ARG A:226 , ASP A:239 , LEU A:240 , ILE A:241 , HIS A:252 , TYR A:287 , TYR A:300 , SAH A:700 , HOH A:967	BINDING SITE FOR RESIDUE EPE A 800
5	AC5	SOFTWARE	SER B:221 , ARG B:222 , PHE B:224 , SER B:225 , ARG B:226 , ASP B:239 , ILE B:241 , HIS B:252 , TYR B:287 , TYR B:300 , SAH B:701 , HOH B:1025	BINDING SITE FOR RESIDUE EPE B 801
6	AC6	SOFTWARE	SER C:221 , ARG C:222 , PHE C:224 , SER C:225 , ARG C:226 , ASP C:239 , ILE C:241 , TYR C:254 , TYR C:287 , TYR C:300 , SAH C:702 , HOH C:820	BINDING SITE FOR RESIDUE EPE C 802

(no "SS Bond" information available for 1MLV)

(no "Cis Peptide Bond" information available for 1MLV)

(no "SAP(SNP)/Variant" information available for 1MLV)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	3	A:64-288 B:64-288 C:64-288

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	1	A:64-288 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	1	- B:64-288 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	1	- - C:64-288

Biological Unit 4 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	3	A:64-288 B:64-288 C:64-288

Biological Unit 5 (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	6	A:64-288 B:64-288 C:64-288

(no "Exon" information available for 1MLV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:424
 aligned with RBCMT_PEA | Q43088 from UniProtKB/Swiss-Prot  Length:489

    Alignment length:437
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       
            RBCMT_PEA    50 LSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILGDLG 486
               SCOP domains d1mlva2 A:50-310 RuBisCo LSMT catalytic domain                                                                                                                                                                                                                       d1mlva1 A:311-486 RuBisCo LSMT C-terminal, substrate-binding domain                                                                                                              SCOP domains
               CATH domains 1mlvA01 A:50-303 set domain protein methyltransferase, domain 1                                                                                                                                                                                               1mlvA02 A:304-468 set domain protein methyltransferase, domain 2                                                                                                     ------------------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..........eeeee..eeeee........eeeeeee.hhh.hhhhhhh..........hhhhhhhhhhhhhhhh....hhhhhh............hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh......---...........ee.............----------.eeeeee..........ee......hhhhhhhhh.....hhhh.eeeeeee......hhhhhhhhhhh.....eeeeeee.......hhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh......hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------SET  PDB: A:64-288 UniProt: 64-288                                                                                                                                                                                               ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mlv A  50 LSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRL---NLVVVPMADLINHSAGVTTEDHAYEV----------YLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENLY 486
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       | - |     239       249      |  -       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       
                                                                                                                                                                                                           227 231                      256        267

Chain B from PDB  Type:PROTEIN  Length:440
 aligned with RBCMT_PEA | Q43088 from UniProtKB/Swiss-Prot  Length:489

    Alignment length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  489 
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488| 
            RBCMT_PEA    49 SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF-   -
               SCOP domains d1mlvb2 B:49-310 RuBisCo LSMT catalytic domain                                                                                                                                                                                                                        d1mlvb1 B:311-488 RuBisCo LSMT C-terminal, substrate-binding domain                                                                                                                  SCOP domains
               CATH domains 1mlvB01 B:49-303 set domain protein methyltransferase, domain 1                                                                                                                                                                                                1mlvB02 B:304-468 set domain protein methyltransferase, domain 2                                                                                                     ---------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh........eeeeee..eeeeee........eeeeee.hhh.hhhhhhh..hhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhh..........hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.............hhhhhee.........eeeehhhhh.hhhh.eeeee...........ee......hhhhhhhhh.....hhhh.eeeeeee......hhhhhhhhhhhh....eeeeeee.......hhhhhhhhhhh.hhhhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh........hhhhhhhh--hh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------SET  PDB: B:64-288 UniProt: 64-288                                                                                                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mlv B  49 SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENL--YFQ 488
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478      |486  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              485  |  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 486

Chain C from PDB  Type:PROTEIN  Length:438
 aligned with RBCMT_PEA | Q43088 from UniProtKB/Swiss-Prot  Length:489

    Alignment length:440
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489
            RBCMT_PEA    50 LSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF 489
               SCOP domains d1mlvc2 C:50-310 RuBisCo LSMT catalytic domain                                                                                                                                                                                                                       d1mlvc1 C:311-487 RuBisCo LSMT C-terminal, substrate-binding domain                                                                                                                 SCOP domains
               CATH domains 1mlvC01 C:50-303 set domain protein methyltransferase, domain 1                                                                                                                                                                                               1mlvC02 C:304-468 set domain protein methyltransferase, domain 2                                                                                                     --------------------- CATH domains
           Pfam domains (1) -------------------------------SET-1mlvC04 C:81-288                                                                                                                                                                                            -----------------------------Rubis-subs-bind-1mlvC01 C:318-444                                                                                              --------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------SET-1mlvC05 C:81-288                                                                                                                                                                                            -----------------------------Rubis-subs-bind-1mlvC02 C:318-444                                                                                              --------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------SET-1mlvC06 C:81-288                                                                                                                                                                                            -----------------------------Rubis-subs-bind-1mlvC03 C:318-444                                                                                              --------------------------------------------- Pfam domains (3)
         Sec.struct. author .hhhhhhhhhhhhhh........eeeeee..eeeeee........eeeeee.hhh.hhhhhhh..........hhhhhhhhhhhhhhhh....hhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh.............hhhhhee..........eeee.....hhhh.eeeee...........ee......hhhhhhhhh.....hhhh.eeeeeee......hhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhh...hhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh........hhhhhhh.--.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------SET  PDB: C:64-288 UniProt: 64-288                                                                                                                                                                                               --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mlv C  50 LSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENL--YF 487
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479     | 487
                                                                                                                                                                                                                                                                                                                                                                                                                                                                             485  | 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                486

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: set domain protein methyltransferase, domain 1 (7)

Homologous Superfamily: set domain protein methyltransferase, domain 1 (7)

Pea (Pisum sativum) (7)

1a	1mlvC01	C:50-303
1b	1mlvB01	B:49-303
1c	1mlvA01	A:50-303

Topology: set domain protein methyltransferase, domain 2 (7)

Homologous Superfamily: set domain protein methyltransferase, domain 2 (7)

Pea (Pisum sativum) (7)

2a	1mlvA02	A:304-468
2b	1mlvB02	B:304-468
2c	1mlvC02	C:304-468

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Rubis-subs-bind] (5)

Family: Rubis-subs-bind (5)

Pisum sativum (Garden pea) (3)

1a	Rubis-subs-bind-1mlvC01	C:318-444
1b	Rubis-subs-bind-1mlvC02	C:318-444
1c	Rubis-subs-bind-1mlvC03	C:318-444

Clan: no clan defined [family: SET] (46)

Family: SET (46)

Pisum sativum (Garden pea) (3)

2a	SET-1mlvC04	C:81-288
2b	SET-1mlvC05	C:81-288
2c	SET-1mlvC06	C:81-288

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (RBCMT_PEA | Q43088)

molecular function
	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1mlv)

Biological Units
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		Biological Unit 5	[ Jena3D ]

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Access by PDB/NDB ID
	1mlv
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

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	RBCMT_PEA \| Q43088
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.1.1.127
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
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		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	RBCMT_PEA \| Q43088
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	RBCMT_PEA \| Q43088	:	1ozv 1p0y 2h21 2h23 2h2e 2h2j

(no "Related Entries Specified in the PDB File" available for 1MLV)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 6)

CATH Domains (2, 6)

Pfam Domains (2, 6)

Gene Ontology (6, 6)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File