1OZV - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE SET DOMAIN OF LSMT BOUND TO LYSINE AND ADOHCY

Authors :   R. C. Trievel, E. M. Flynn, R. L. Houtz, J. H. Hurley

Date :   09 Apr 03 (Deposition) - 01 Jul 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.65

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: A,B,C  (1x)

Keywords :   Set Domain, Lysine N-Methylation, Multiple Methylation, Photosynthesis, Post-Translational Modification, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. C. Trievel, E. M. Flynn, R. L. Houtz, J. H. Hurley
Mechanism Of Multiple Lysine Methylation By The Set Domain Enzyme Rubisco Lsmt
Nat. Struct. Biol. V. 10 545 2003
PubMed-ID: 12819771 | Reference-DOI: 10.1038/NSB946

Molecule 1 - RIBULOSE-1,5 BISPHOSPHATE CARBOXYLASE/OXYGENASE LARGE SUBUNIT N-METHYLTRANSFERASE, CHLOROPLAST
	Chains	:	A, B, C
	EC Number	:	2.1.1.127
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PDEST14
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Organism Common	:	PEA
	Organism Scientific	:	PISUM SATIVUM
	Organism Taxid	:	3888
	Synonym	:	[RIBULOSE-BISPHOSPHATE-CARBOXYLASE]-LYSINE N- METHYLTRANSFERASE, RUBISCO METHYLTRANSFERASE, RUBISCO LSMT, RBCMT

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	LYS	3	Mod. Amino Acid	LYSINE
2	SAH	3	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	LYS	3	Mod. Amino Acid	LYSINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	LYS	-1	Mod. Amino Acid	LYSINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	LYS	-1	Mod. Amino Acid	LYSINE
2	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Biological Unit 4 (2, 6)

No.	Name	Count	Type	Full Name
1	LYS	3	Mod. Amino Acid	LYSINE
2	SAH	3	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:221 , ARG A:222 , ALA A:223 , SER A:225 , ARG A:226 , ASP A:239 , ILE A:241 , TYR A:254 , TYR A:287 , TYR A:300 , SAH A:1000	BINDING SITE FOR RESIDUE LYS A 700
2	AC2	SOFTWARE	HOH A:1002 , HOH A:1023 , SER B:221 , ARG B:222 , PHE B:224 , SER B:225 , TYR B:287	BINDING SITE FOR RESIDUE LYS A 800
3	AC3	SOFTWARE	HOH A:1003 , HOH A:1036 , SER C:221 , ARG C:222 , PHE C:224 , SER C:225 , ARG C:226 , ASP C:239 , TYR C:254 , TYR C:287 , TYR C:300 , SAH C:1002	BINDING SITE FOR RESIDUE LYS A 900
4	AC4	SOFTWARE	GLU A:80 , GLY A:81 , LEU A:82 , PRO A:151 , SER A:221 , ARG A:222 , ASP A:239 , ASN A:242 , HIS A:243 , TYR A:287 , TYR A:300 , LYS A:700 , HOH A:1006 , HOH A:1035 , HOH A:1067 , HOH A:1071 , HOH A:1099 , HOH A:1105	BINDING SITE FOR RESIDUE SAH A 1000
5	AC5	SOFTWARE	GLU B:80 , GLY B:81 , LEU B:82 , SER B:221 , ARG B:222 , ASP B:239 , ASN B:242 , HIS B:243 , TYR B:287 , TYR B:300 , PHE B:302 , HOH B:1006 , HOH B:1012 , HOH B:1013 , HOH B:1021 , HOH B:1176 , PHE C:263	BINDING SITE FOR RESIDUE SAH B 1001
6	AC6	SOFTWARE	LYS A:900 , GLU C:80 , LEU C:82 , SER C:221 , ARG C:222 , ASP C:239 , LEU C:240 , ILE C:241 , ASN C:242 , HIS C:243 , TYR C:287 , TYR C:300 , GLY C:301 , PHE C:302 , HOH C:1013 , HOH C:1039	BINDING SITE FOR RESIDUE SAH C 1002

(no "SS Bond" information available for 1OZV)

(no "Cis Peptide Bond" information available for 1OZV)

(no "SAP(SNP)/Variant" information available for 1OZV)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	3	A:64-288 B:64-288 C:64-288

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	1	A:64-288 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	1	- B:64-288 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	1	- - C:64-288

Biological Unit 4 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	SET	PS50280	SET domain profile.	RBCMT_PEA	64-288	3	A:64-288 B:64-288 C:64-288

(no "Exon" information available for 1OZV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:432
 aligned with RBCMT_PEA | Q43088 from UniProtKB/Swiss-Prot  Length:489

    Alignment length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 489  
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489  
            RBCMT_PEA    50 LSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF--   -
               SCOP domains d1ozva2 A:50-310 RuBisCo LSMT catalytic domain                                                                                                                                                                                                                       d1ozva1 A:311-487 RuBisCo LSMT C-terminal, substrate-binding domain                                                                                                               --- SCOP domains
               CATH domains 1ozvA01 A:50-303 set domain protein methyltransferase, domain 1                                                                                                                                                                                               1ozvA02 A:304-468 set domain protein methyltransferase, domain 2                                                                                                     ------------------- --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.........eeeeee..eeeeee.......eeeeeee.hhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhh............hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh..................ee..........eee.---------.eeeeee..........ee......hhhhhhhhh.....hhhh.eeeeeee......hhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh........hhhhhhhhh-... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------SET  PDB: A:64-288 UniProt: 64-288                                                                                                                                                                                               ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ozv A  50 LSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVK---------YLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENLYF-KKK 900
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       | -       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       700||
                                                                                                                                                                                                                                         257       267                                                                                                                                                                                                                         487 |||
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 700||
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  800|
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   900

Chain B from PDB  Type:PROTEIN  Length:441
 aligned with RBCMT_PEA | Q43088 from UniProtKB/Swiss-Prot  Length:489

    Alignment length:443
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   489 
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487 | 
            RBCMT_PEA    48 PSLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF-   -
               SCOP domains d1ozvb2 B:48-310 RuBisCo LSMT catalytic domain                                                                                                                                                                                                                         d1ozvb1 B:311-488 RuBisCo LSMT C-terminal, substrate-binding domain                                                                                                                  SCOP domains
               CATH domains 1ozvB01 B:48-303 set domain protein methyltransferase, domain 1                                                                                                                                                                                                 1ozvB02 B:304-468 set domain protein methyltransferase, domain 2                                                                                                     ---------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh........eeeeee..eeeeee........eeeeee.hhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.............hhhhhee.........eeeehhhhh.hhhh.eeeee...........ee......hhhhhhhhh.....hhhh.eeeeeee......hhhhhhhhhhhh....eeeeeee.......hhhhhhhhhhh...hhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh........hhhhhhhh--hh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------SET  PDB: B:64-288 UniProt: 64-288                                                                                                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ozv B  48 PSLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENL--YFQ 488
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       | -|  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               485  |  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  486

Chain C from PDB  Type:PROTEIN  Length:440
 aligned with RBCMT_PEA | Q43088 from UniProtKB/Swiss-Prot  Length:489

    Alignment length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  489 
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488| 
            RBCMT_PEA    49 SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF-   -
               SCOP domains d1ozvc2 C:49-310 RuBisCo LSMT catalytic domain                                                                                                                                                                                                                        d1ozvc1 C:311-488 RuBisCo LSMT C-terminal, substrate-binding domain                                                                                                                  SCOP domains
               CATH domains 1ozvC01 C:49-303 set domain protein methyltransferase, domain 1                                                                                                                                                                                                1ozvC02 C:304-468 set domain protein methyltransferase, domain 2                                                                                                     ---------------------- CATH domains
           Pfam domains (1) --------------------------------SET-1ozvC04 C:81-288                                                                                                                                                                                            -----------------------------Rubis-subs-bind-1ozvC01 C:318-444                                                                                              ---------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------------------SET-1ozvC05 C:81-288                                                                                                                                                                                            -----------------------------Rubis-subs-bind-1ozvC02 C:318-444                                                                                              ---------------------------------------------- Pfam domains (2)
           Pfam domains (3) --------------------------------SET-1ozvC06 C:81-288                                                                                                                                                                                            -----------------------------Rubis-subs-bind-1ozvC03 C:318-444                                                                                              ---------------------------------------------- Pfam domains (3)
         Sec.struct. author ..hhhhhhhhhhhhhh........eeeeee..eeeeee........eeeeee.hhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.............hhhhhee..........eeee.....hhhh.eeeee...........ee......hhhhhhhhh.....hhhh.eeeeeee......hhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh........hhhhhhhh--hhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------SET  PDB: C:64-288 UniProt: 64-288                                                                                                                                                                                               ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ozv C  49 SLSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENL--YFQ 488
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478      |486  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              485  |  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 486

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: set domain protein methyltransferase, domain 1 (7)

Homologous Superfamily: set domain protein methyltransferase, domain 1 (7)

Pea (Pisum sativum) (7)

1a	1ozvC01	C:49-303
1b	1ozvB01	B:48-303
1c	1ozvA01	A:50-303

Topology: set domain protein methyltransferase, domain 2 (7)

Homologous Superfamily: set domain protein methyltransferase, domain 2 (7)

Pea (Pisum sativum) (7)

2a	1ozvA02	A:304-468
2b	1ozvB02	B:304-468
2c	1ozvC02	C:304-468

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Rubis-subs-bind] (5)

Family: Rubis-subs-bind (5)

Pisum sativum (Garden pea) (3)

1a	Rubis-subs-bind-1ozvC01	C:318-444
1b	Rubis-subs-bind-1ozvC02	C:318-444
1c	Rubis-subs-bind-1ozvC03	C:318-444

Clan: no clan defined [family: SET] (46)

Family: SET (46)

Pisum sativum (Garden pea) (3)

2a	SET-1ozvC04	C:81-288
2b	SET-1ozvC05	C:81-288
2c	SET-1ozvC06	C:81-288

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (RBCMT_PEA | Q43088)

molecular function
	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	Catalysis of the reaction: S-adenosyl-L-methionine + [ribulose-1,5-bisphosphate carboxylase]-lysine = S-adenosyl-L-homocysteine + [ribulose-1,5-bisphosphate carboxylase]-N6-methyl-L-lysine.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		LYS	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SAH	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1ozv)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1ozv
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	RBCMT_PEA \| Q43088
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.1.1.127
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	RBCMT_PEA \| Q43088
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	RBCMT_PEA \| Q43088	:	1mlv 1p0y 2h21 2h23 2h2e 2h2j

1mlv	STRUCTURE AND CATALYTIC MECHANISM OF A SET DOMAIN PROTEIN METHYLTRANSFERASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 6)

CATH Domains (2, 6)

Pfam Domains (2, 6)

Gene Ontology (6, 6)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File