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(-) Description

Title :  CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
 
Authors :  G. Verdon, S. -V. Albers, N. Van Oosterwijk, B. W. Dijkstra, A. J. M. Dri A. M. W. H. Thunnissen
Date :  03 Apr 03  (Deposition) - 30 Sep 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  K
Keywords :  Abc-Atpase, Atp-Binding Cassette, Atpase, Glcv, Sulfolobus Solfataricus, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Verdon, S. -V. Albers, N. Van Oosterwijk, B. W. Dijkstra, A. J. M. Driessen, A. M. W. H. Thunnissen
Formation Of The Productive Atp-Mg2+-Bound Dimer Of Glcv, A Abc-Atpase From Sulfolobus Solfataricus
J. Mol. Biol. V. 334 255 2003
PubMed-ID: 14607117  |  Reference-DOI: 10.1016/J.JMB.2003.08.065

(-) Compounds

Molecule 1 - ABC TRANSPORTER, ATP BINDING PROTEIN
    Chains: K
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: C43(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GLCV
    Mutation: YES
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: GLCV, GLUCOSE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : K

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 32)

Asymmetric/Biological Unit (1, 32)
No.NameCountTypeFull Name
1IOD32Ligand/IonIODIDE ION

(-) Sites  (30, 30)

Asymmetric Unit (30, 30)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER K:334BINDING SITE FOR RESIDUE IOD K 1901
02AC2SOFTWARELYS K:17 , LEU K:283BINDING SITE FOR RESIDUE IOD K 1902
03AC3SOFTWAREHOH K:2342BINDING SITE FOR RESIDUE IOD K 1903
04AC4SOFTWARESER K:40 , LYS K:216 , GLY K:217 , IOD K:1933 , HOH K:2396BINDING SITE FOR RESIDUE IOD K 1904
05AC5SOFTWAREMET K:110 , HOH K:2556BINDING SITE FOR RESIDUE IOD K 1905
06AC6SOFTWAREARG K:120 , ARG K:189 , HOH K:2320BINDING SITE FOR RESIDUE IOD K 1906
07AC7SOFTWAREARG K:67BINDING SITE FOR RESIDUE IOD K 1908
08AC8SOFTWARETYR K:94 , ASN K:96BINDING SITE FOR RESIDUE IOD K 1909
09AC9SOFTWARESER K:234 , HOH K:2205BINDING SITE FOR RESIDUE IOD K 1910
10BC1SOFTWARETHR K:90BINDING SITE FOR RESIDUE IOD K 1911
11BC2SOFTWAREHOH K:2617BINDING SITE FOR RESIDUE IOD K 1912
12BC3SOFTWAREASN K:135 , HOH K:2508BINDING SITE FOR RESIDUE IOD K 1913
13BC4SOFTWAREGLN K:147 , VAL K:183BINDING SITE FOR RESIDUE IOD K 1914
14BC5SOFTWARELYS K:14 , HOH K:2382BINDING SITE FOR RESIDUE IOD K 1915
15BC6SOFTWAREARG K:210 , HOH K:2500BINDING SITE FOR RESIDUE IOD K 1917
16BC7SOFTWAREASN K:23 , ASN K:25 , HOH K:2125 , HOH K:2126BINDING SITE FOR RESIDUE IOD K 1920
17BC8SOFTWAREILE K:235 , HOH K:2318BINDING SITE FOR RESIDUE IOD K 1921
18BC9SOFTWARELYS K:15BINDING SITE FOR RESIDUE IOD K 1922
19CC1SOFTWAREMET K:86 , TRP K:91BINDING SITE FOR RESIDUE IOD K 1923
20CC2SOFTWAREHOH K:2212 , HOH K:2410BINDING SITE FOR RESIDUE IOD K 1924
21CC3SOFTWAREASP K:172 , IOD K:1926 , HOH K:2599BINDING SITE FOR RESIDUE IOD K 1925
22CC4SOFTWAREALA K:144 , IOD K:1925 , HOH K:2282BINDING SITE FOR RESIDUE IOD K 1926
23CC5SOFTWAREHOH K:2252 , HOH K:2277 , HOH K:2504BINDING SITE FOR RESIDUE IOD K 1927
24CC6SOFTWAREHOH K:2337BINDING SITE FOR RESIDUE IOD K 1928
25CC7SOFTWAREARG K:148BINDING SITE FOR RESIDUE IOD K 1929
26CC8SOFTWAREASP K:65BINDING SITE FOR RESIDUE IOD K 1930
27CC9SOFTWAREGLN K:221 , HOH K:1966 , HOH K:2183 , HOH K:2308 , HOH K:2580BINDING SITE FOR RESIDUE IOD K 1931
28DC1SOFTWARELYS K:224 , PRO K:225 , GLU K:226 , HOH K:2067 , HOH K:2365BINDING SITE FOR RESIDUE IOD K 1932
29DC2SOFTWARELYS K:216 , IOD K:1904BINDING SITE FOR RESIDUE IOD K 1933
30DC3SOFTWAREGLU K:351BINDING SITE FOR RESIDUE IOD K 1944

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OXX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OXX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OXX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OXX)

(-) Exons   (0, 0)

(no "Exon" information available for 1OXX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain K from PDB  Type:PROTEIN  Length:352
 aligned with Q97UY8_SULSO | Q97UY8 from UniProtKB/TrEMBL  Length:353

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
         Q97UY8_SULSO     1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
               SCOP domains d1oxxk2 K:1-242 Glucose transport protein GlcV, N-terminal domain                                                                                                                                                                                 d1oxxk1 K:243-352 Glucose transport protein GlcV, N-terminal domain                                            SCOP domains
               CATH domains 1oxxK01 K:1-244 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                1oxxK03 K:245-279,K:343-352        -----------------1oxxK02 K:297-341                            -1oxxK03    CATH domains
               Pfam domains --------------------------------------------ABC_tran-1oxxK02 K:45-169                                                                                                    --------------------------------------------------------------------------------------------------------TOBE_2-1oxxK01 K:274-350                                                     -- Pfam domains
         Sec.struct. author ...eeeeeeeeeehhhheeeeeeeeeee....eeeee..hhhhhhhhhhhhhh.....eeeeee..eeeee..ee..hhhhh.eeeee.........hhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhh.eeeeee..eeeeeehhhhhhhh..hhhhhhhhh..eeeeeeee..eeee..eee.......eeeeeehhh.eeee.........eeeeeeeeeeeeee..eeeeeeee......eeeee........eeeeee.hhhheeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oxx K   1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: OB (224)
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain K   (Q97UY8_SULSO | Q97UY8)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  1oxx
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 Related Entries

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UniProtKB/TrEMBL
        Q97UY8_SULSO | Q97UY8: 1oxs 1oxt 1oxu 1oxv

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