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1OXX
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
Authors
:
G. Verdon, S. -V. Albers, N. Van Oosterwijk, B. W. Dijkstra, A. J. M. Dri A. M. W. H. Thunnissen
Date
:
03 Apr 03 (Deposition) - 30 Sep 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : K
Biol. Unit 1: K (1x)
Keywords
:
Abc-Atpase, Atp-Binding Cassette, Atpase, Glcv, Sulfolobus Solfataricus, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Verdon, S. -V. Albers, N. Van Oosterwijk, B. W. Dijkstra, A. J. M. Driessen, A. M. W. H. Thunnissen
Formation Of The Productive Atp-Mg2+-Bound Dimer Of Glcv, A Abc-Atpase From Sulfolobus Solfataricus
J. Mol. Biol. V. 334 255 2003
[
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Hetero Components
(1, 32)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1aa: IODIDE ION (IODaa)
1ab: IODIDE ION (IODab)
1ac: IODIDE ION (IODac)
1ad: IODIDE ION (IODad)
1ae: IODIDE ION (IODae)
1af: IODIDE ION (IODaf)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
32
Ligand/Ion
IODIDE ION
[
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER K:334
BINDING SITE FOR RESIDUE IOD K 1901
02
AC2
SOFTWARE
LYS K:17 , LEU K:283
BINDING SITE FOR RESIDUE IOD K 1902
03
AC3
SOFTWARE
HOH K:2342
BINDING SITE FOR RESIDUE IOD K 1903
04
AC4
SOFTWARE
SER K:40 , LYS K:216 , GLY K:217 , IOD K:1933 , HOH K:2396
BINDING SITE FOR RESIDUE IOD K 1904
05
AC5
SOFTWARE
MET K:110 , HOH K:2556
BINDING SITE FOR RESIDUE IOD K 1905
06
AC6
SOFTWARE
ARG K:120 , ARG K:189 , HOH K:2320
BINDING SITE FOR RESIDUE IOD K 1906
07
AC7
SOFTWARE
ARG K:67
BINDING SITE FOR RESIDUE IOD K 1908
08
AC8
SOFTWARE
TYR K:94 , ASN K:96
BINDING SITE FOR RESIDUE IOD K 1909
09
AC9
SOFTWARE
SER K:234 , HOH K:2205
BINDING SITE FOR RESIDUE IOD K 1910
10
BC1
SOFTWARE
THR K:90
BINDING SITE FOR RESIDUE IOD K 1911
11
BC2
SOFTWARE
HOH K:2617
BINDING SITE FOR RESIDUE IOD K 1912
12
BC3
SOFTWARE
ASN K:135 , HOH K:2508
BINDING SITE FOR RESIDUE IOD K 1913
13
BC4
SOFTWARE
GLN K:147 , VAL K:183
BINDING SITE FOR RESIDUE IOD K 1914
14
BC5
SOFTWARE
LYS K:14 , HOH K:2382
BINDING SITE FOR RESIDUE IOD K 1915
15
BC6
SOFTWARE
ARG K:210 , HOH K:2500
BINDING SITE FOR RESIDUE IOD K 1917
16
BC7
SOFTWARE
ASN K:23 , ASN K:25 , HOH K:2125 , HOH K:2126
BINDING SITE FOR RESIDUE IOD K 1920
17
BC8
SOFTWARE
ILE K:235 , HOH K:2318
BINDING SITE FOR RESIDUE IOD K 1921
18
BC9
SOFTWARE
LYS K:15
BINDING SITE FOR RESIDUE IOD K 1922
19
CC1
SOFTWARE
MET K:86 , TRP K:91
BINDING SITE FOR RESIDUE IOD K 1923
20
CC2
SOFTWARE
HOH K:2212 , HOH K:2410
BINDING SITE FOR RESIDUE IOD K 1924
21
CC3
SOFTWARE
ASP K:172 , IOD K:1926 , HOH K:2599
BINDING SITE FOR RESIDUE IOD K 1925
22
CC4
SOFTWARE
ALA K:144 , IOD K:1925 , HOH K:2282
BINDING SITE FOR RESIDUE IOD K 1926
23
CC5
SOFTWARE
HOH K:2252 , HOH K:2277 , HOH K:2504
BINDING SITE FOR RESIDUE IOD K 1927
24
CC6
SOFTWARE
HOH K:2337
BINDING SITE FOR RESIDUE IOD K 1928
25
CC7
SOFTWARE
ARG K:148
BINDING SITE FOR RESIDUE IOD K 1929
26
CC8
SOFTWARE
ASP K:65
BINDING SITE FOR RESIDUE IOD K 1930
27
CC9
SOFTWARE
GLN K:221 , HOH K:1966 , HOH K:2183 , HOH K:2308 , HOH K:2580
BINDING SITE FOR RESIDUE IOD K 1931
28
DC1
SOFTWARE
LYS K:224 , PRO K:225 , GLU K:226 , HOH K:2067 , HOH K:2365
BINDING SITE FOR RESIDUE IOD K 1932
29
DC2
SOFTWARE
LYS K:216 , IOD K:1904
BINDING SITE FOR RESIDUE IOD K 1933
30
DC3
SOFTWARE
GLU K:351
BINDING SITE FOR RESIDUE IOD K 1944
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1oxxk1 (K:243-352)
2a: SCOP_d1oxxk2 (K:1-242)
View:
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Classes
(
)
(
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Folds
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Superfamilies
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
MOP-like
(40)
Family
:
ABC-transporter additional domain
(24)
Protein domain
:
Glucose transport protein GlcV, N-terminal domain
(5)
Sulfolobus solfataricus [TaxId: 2287]
(5)
1a
d1oxxk1
K:243-352
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Glucose transport protein GlcV, N-terminal domain
(5)
Sulfolobus solfataricus [TaxId: 2287]
(5)
2a
d1oxxk2
K:1-242
[
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1oxxK01 (K:1-244)
2a: CATH_1oxxK03 (K:245-279,K:343-352)
3a: CATH_1oxxK02 (K:297-341)
View:
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Classes
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)
(
)
Architectures
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Sulfolobus solfataricus. Organism_taxid: 2287.
(12)
1a
1oxxK01
K:1-244
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
2a
1oxxK03
K:245-279,K:343-352
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
3a
1oxxK02
K:297-341
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_TOBE_2_1oxxK01 (K:274-350)
2a: PFAM_ABC_tran_1oxxK02 (K:45-169)
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Clans
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(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
OB
(224)
Family
:
TOBE_2
(15)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(4)
1a
TOBE_2-1oxxK01
K:274-350
Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
(5)
2a
ABC_tran-1oxxK02
K:45-169
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Asymmetric Unit 1
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