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(-) Description

Title :  CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
 
Authors :  G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnissen
Date :  03 Apr 03  (Deposition) - 17 Jun 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  D  (1x)
Keywords :  Abc-Atpase, Atp-Binding Cassette, Atpase, Glcv, Sulfolobus Solfataricus, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnisse
Crystal Structures Of The Atpase Subunit Of The Glucose Abc Transporter From Sulfolobus Solfataricus: Nucleotide-Free And Nucleotide-Bound Conformations
J. Mol. Biol. V. 330 343 2003
PubMed-ID: 12823973  |  Reference-DOI: 10.1016/S0022-2836(03)00575-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ABC TRANSPORTER, ATP BINDING PROTEIN
    Chains: A, B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: C43(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GLCV
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: GLCV, GLUCOSE

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABD
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1OXT)

(-) Sites  (0, 0)

(no "Site" information available for 1OXT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OXT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OXT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OXT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OXT)

(-) Exons   (0, 0)

(no "Exon" information available for 1OXT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:352
 aligned with Q97UY8_SULSO | Q97UY8 from UniProtKB/TrEMBL  Length:353

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
         Q97UY8_SULSO     1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
               SCOP domains d1oxta2 A:1-242 Glucose transport protein GlcV, N-terminal domain                                                                                                                                                                                 d1oxta1 A:243-352 Glucose transport protein GlcV, N-terminal domain                                            SCOP domains
               CATH domains 1oxtA01 A:1-245 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                 1oxtA03 A:246-279,A:343-352       -----------------1oxtA02 A:297-341                            -1oxtA03    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeehhhheeeeeeeeeee....eeeee.....hhhhhhhhhh......eeeeee..eeeee..ee..hhhhh.eeee..........hhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhh.eeeeee..eeeeeehhhhhhhh..hhhhhhhh...eeeeeee....eee..eee.......eeeeeehhh.eeee........eeeeeeeeeeeeeee..eeeeeeee......eeeee........eeeeeee.hhheeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oxt A   1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain B from PDB  Type:PROTEIN  Length:352
 aligned with Q97UY8_SULSO | Q97UY8 from UniProtKB/TrEMBL  Length:353

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
         Q97UY8_SULSO     1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
               SCOP domains d1oxtb2 B:1-242 Glucose transport protein GlcV, N-terminal domain                                                                                                                                                                                 d1oxtb1 B:243-352 Glucose transport protein GlcV, N-terminal domain                                            SCOP domains
               CATH domains 1oxtB01 B:1-245 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                 1oxtB03 B:246-279,B:343-352       -----------------1oxtB02 B:297-341                            -1oxtB03    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeehhhheeeeeeeeeee....eeeee.....hhhhhhhhhh......eeeeee..eeeee..ee..hhhhh.eeee..........hhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhh.eeeeee..eeeeeehhhhhhhh..hhhhhhhhh..eeeeeee....eee..eee.......eeeeeehhh.eeee........eeeeeeeeeeeeeee..eeeeeeee......eeeee........eeeeeee.hhheeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oxt B   1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain D from PDB  Type:PROTEIN  Length:352
 aligned with Q97UY8_SULSO | Q97UY8 from UniProtKB/TrEMBL  Length:353

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
         Q97UY8_SULSO     1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
               SCOP domains d1oxtd2 D:1-242 Glucose transport protein GlcV, N-terminal domain                                                                                                                                                                                 d1oxtd1 D:243-352 Glucose transport protein GlcV, N-terminal domain                                            SCOP domains
               CATH domains 1oxtD01 D:1-244 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                1oxtD03 D:245-279,D:343-352        -----------------1oxtD02 D:297-341                            -1oxtD03    CATH domains
           Pfam domains (1) --------------------------------------------ABC_tran-1oxtD04 D:45-169                                                                                                    --------------------------------------------------------------------------------------------------------TOBE_2-1oxtD01 D:274-350                                                     -- Pfam domains (1)
           Pfam domains (2) --------------------------------------------ABC_tran-1oxtD05 D:45-169                                                                                                    --------------------------------------------------------------------------------------------------------TOBE_2-1oxtD02 D:274-350                                                     -- Pfam domains (2)
           Pfam domains (3) --------------------------------------------ABC_tran-1oxtD06 D:45-169                                                                                                    --------------------------------------------------------------------------------------------------------TOBE_2-1oxtD03 D:274-350                                                     -- Pfam domains (3)
         Sec.struct. author ...eeeeeeeee......eeeeeeeeee....eeeee.....hhhhhhhhhhh.....eeeeee..eeeee..ee..hhhhh.eeee..........hhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhh.eeeeee..eeeeeehhhhhhhh..hhhhhhhhh..eeeeeeee..eeee..eee.......eeeeeehhh.eeee........eeeeeeeeeeeeeee..eeeeeeee......eeeee........eeeeeee.hhheeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oxt D   1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 9)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 6)

Asymmetric Unit
(-)
Clan: OB (224)
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,D   (Q97UY8_SULSO | Q97UY8)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  1oxt
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q97UY8_SULSO | Q97UY8: 1oxs 1oxu 1oxv 1oxx

(-) Related Entries Specified in the PDB File

1oxs CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS, COMPLEXED WITH IODIDE IONS
1oxu CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS, COMPLEXED WITH ADP AND MG2+
1oxv CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS, COMPLEXED WITH AMPPNP AND MG2+