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(-) Description

Title :  CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
 
Authors :  G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnissen
Date :  03 Apr 03  (Deposition) - 17 Jun 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  C
Keywords :  Abc-Atpase, Atp-Binding Cassette, Atpase, Glcv, Sulfolobus Solfataricus, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnisse
Crystal Structures Of The Atpase Subunit Of The Glucose Abc Transporter From Sulfolobus Solfataricus: Nucleotide-Free And Nucleotide-Bound Conformations
J. Mol. Biol. V. 330 343 2003
PubMed-ID: 12823973  |  Reference-DOI: 10.1016/S0022-2836(03)00575-8
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ABC TRANSPORTER, ATP BINDING PROTEIN
    ChainsC
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-15B
    Expression System StrainC43(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneGLCV
    Organism ScientificSULFOLOBUS SOLFATARICUS
    Organism Taxid2287
    SynonymGLCV, GLUCOSE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 28)

Asymmetric/Biological Unit (1, 28)
No.NameCountTypeFull Name
1IOD28Ligand/IonIODIDE ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS C:17 , LEU C:283 , SER C:328BINDING SITE FOR RESIDUE IOD C 601
02AC2SOFTWAREARG C:189BINDING SITE FOR RESIDUE IOD C 602
03AC3SOFTWARESER C:234 , HOH C:816BINDING SITE FOR RESIDUE IOD C 603
04AC4SOFTWARELEU C:295 , SER C:334BINDING SITE FOR RESIDUE IOD C 605
05AC5SOFTWARETYR C:94 , ASN C:96 , LEU C:97BINDING SITE FOR RESIDUE IOD C 606
06AC6SOFTWAREASN C:135BINDING SITE FOR RESIDUE IOD C 607
07AC7SOFTWARELYS C:14 , IOD C:618 , HOH C:993BINDING SITE FOR RESIDUE IOD C 608
08AC8SOFTWAREILE C:235BINDING SITE FOR RESIDUE IOD C 609
09AC9SOFTWAREGLN C:147 , VAL C:183 , HOH C:768BINDING SITE FOR RESIDUE IOD C 610
10BC1SOFTWAREARG C:189BINDING SITE FOR RESIDUE IOD C 611
11BC2SOFTWARELYS C:216BINDING SITE FOR RESIDUE IOD C 613
12BC3SOFTWAREMET C:86 , TRP C:91BINDING SITE FOR RESIDUE IOD C 614
13BC4SOFTWAREGLU C:351BINDING SITE FOR RESIDUE IOD C 615
14BC5SOFTWAREHOH C:1037 , HOH C:1038 , HOH C:1057BINDING SITE FOR RESIDUE IOD C 616
15BC6SOFTWARETHR C:90BINDING SITE FOR RESIDUE IOD C 617
16BC7SOFTWARELYS C:14 , IOD C:608BINDING SITE FOR RESIDUE IOD C 618
17BC8SOFTWAREIOD C:630 , HOH C:1073BINDING SITE FOR RESIDUE IOD C 619
18BC9SOFTWAREMET C:110BINDING SITE FOR RESIDUE IOD C 620
19CC1SOFTWAREARG C:67 , ASP C:81 , HOH C:1077 , HOH C:1089BINDING SITE FOR RESIDUE IOD C 621
20CC2SOFTWAREASN C:23 , ASN C:25 , HOH C:793 , HOH C:876BINDING SITE FOR RESIDUE IOD C 622
21CC3SOFTWAREASP C:172BINDING SITE FOR RESIDUE IOD C 624
22CC4SOFTWAREASP C:65 , ASP C:66 , HOH C:832BINDING SITE FOR RESIDUE IOD C 627
23CC5SOFTWARELYS C:15 , HOH C:962 , HOH C:1003BINDING SITE FOR RESIDUE IOD C 628
24CC6SOFTWAREHOH C:1048 , HOH C:1091BINDING SITE FOR RESIDUE IOD C 629
25CC7SOFTWAREIOD C:619 , HOH C:644 , HOH C:1073BINDING SITE FOR RESIDUE IOD C 630
26CC8SOFTWAREARG C:271BINDING SITE FOR RESIDUE IOD C 631

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OXS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OXS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OXS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OXS)

(-) Exons   (0, 0)

(no "Exon" information available for 1OXS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain C from PDB  Type:PROTEIN  Length:352
 aligned with Q97UY8_SULSO | Q97UY8 from UniProtKB/TrEMBL  Length:353

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
         Q97UY8_SULSO     1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
               SCOP domains d1oxsc2 C:1-242 Glucose transport protein GlcV, N-terminal domain                                                                                                                                                                                 d1oxsc1 C:243-352 Glucose transport protein GlcV, N-terminal domain                                            SCOP domains
               CATH domains 1oxsC01 C:1-245 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                 1oxsC03 C:246-279,C:343-352       -----------------1oxsC02 C:297-341                            -1oxsC03    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeehhhheeeeeeeeeee....eeeee..hhhhhhhhhhhhhh.....eeeeee..eeeee..ee..hhhhh.eeeee.........hhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhh.eeeeee..eeeeeehhhhhhhh..hhhhhhhh...eeeeeeee..eeee..eee.......eeeeeehhh.eeee.........eeeeeeeeeeeeee..eeeeeeee......eeeee........eeeeee.hhhheeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oxs C   1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNEGVVIGSLRFPVSVSSDRAIIGIRPEDVKLSKDVIKDDSWILVGKGKVKVIGYQGGLFRITITPLDSEEEIFTYSDHPIHSGEEVLVYVRKDKIKVFEK 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1OXS)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain C   (Q97UY8_SULSO | Q97UY8)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

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UniProtKB/TrEMBL
        Q97UY8_SULSO | Q97UY81oxt 1oxu 1oxv 1oxx

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