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1OXS
Asym. Unit
Info
Asym.Unit (73 KB)
Biol.Unit 1 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLCV, THE ABC-ATPASE OF THE GLUCOSE ABC TRANSPORTER FROM SULFOLOBUS SOLFATARICUS
Authors
:
G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnissen
Date
:
03 Apr 03 (Deposition) - 17 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : C
Biol. Unit 1: C (1x)
Keywords
:
Abc-Atpase, Atp-Binding Cassette, Atpase, Glcv, Sulfolobus Solfataricus, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Verdon, S. V. Albers, B. W. Dijkstra, A. J. Driessen, A. M. Thunnisse
Crystal Structures Of The Atpase Subunit Of The Glucose Abc Transporter From Sulfolobus Solfataricus: Nucleotide-Free And Nucleotide-Bound Conformations
J. Mol. Biol. V. 330 343 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 28)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1aa: IODIDE ION (IODaa)
1ab: IODIDE ION (IODab)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
28
Ligand/Ion
IODIDE ION
[
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS C:17 , LEU C:283 , SER C:328
BINDING SITE FOR RESIDUE IOD C 601
02
AC2
SOFTWARE
ARG C:189
BINDING SITE FOR RESIDUE IOD C 602
03
AC3
SOFTWARE
SER C:234 , HOH C:816
BINDING SITE FOR RESIDUE IOD C 603
04
AC4
SOFTWARE
LEU C:295 , SER C:334
BINDING SITE FOR RESIDUE IOD C 605
05
AC5
SOFTWARE
TYR C:94 , ASN C:96 , LEU C:97
BINDING SITE FOR RESIDUE IOD C 606
06
AC6
SOFTWARE
ASN C:135
BINDING SITE FOR RESIDUE IOD C 607
07
AC7
SOFTWARE
LYS C:14 , IOD C:618 , HOH C:993
BINDING SITE FOR RESIDUE IOD C 608
08
AC8
SOFTWARE
ILE C:235
BINDING SITE FOR RESIDUE IOD C 609
09
AC9
SOFTWARE
GLN C:147 , VAL C:183 , HOH C:768
BINDING SITE FOR RESIDUE IOD C 610
10
BC1
SOFTWARE
ARG C:189
BINDING SITE FOR RESIDUE IOD C 611
11
BC2
SOFTWARE
LYS C:216
BINDING SITE FOR RESIDUE IOD C 613
12
BC3
SOFTWARE
MET C:86 , TRP C:91
BINDING SITE FOR RESIDUE IOD C 614
13
BC4
SOFTWARE
GLU C:351
BINDING SITE FOR RESIDUE IOD C 615
14
BC5
SOFTWARE
HOH C:1037 , HOH C:1038 , HOH C:1057
BINDING SITE FOR RESIDUE IOD C 616
15
BC6
SOFTWARE
THR C:90
BINDING SITE FOR RESIDUE IOD C 617
16
BC7
SOFTWARE
LYS C:14 , IOD C:608
BINDING SITE FOR RESIDUE IOD C 618
17
BC8
SOFTWARE
IOD C:630 , HOH C:1073
BINDING SITE FOR RESIDUE IOD C 619
18
BC9
SOFTWARE
MET C:110
BINDING SITE FOR RESIDUE IOD C 620
19
CC1
SOFTWARE
ARG C:67 , ASP C:81 , HOH C:1077 , HOH C:1089
BINDING SITE FOR RESIDUE IOD C 621
20
CC2
SOFTWARE
ASN C:23 , ASN C:25 , HOH C:793 , HOH C:876
BINDING SITE FOR RESIDUE IOD C 622
21
CC3
SOFTWARE
ASP C:172
BINDING SITE FOR RESIDUE IOD C 624
22
CC4
SOFTWARE
ASP C:65 , ASP C:66 , HOH C:832
BINDING SITE FOR RESIDUE IOD C 627
23
CC5
SOFTWARE
LYS C:15 , HOH C:962 , HOH C:1003
BINDING SITE FOR RESIDUE IOD C 628
24
CC6
SOFTWARE
HOH C:1048 , HOH C:1091
BINDING SITE FOR RESIDUE IOD C 629
25
CC7
SOFTWARE
IOD C:619 , HOH C:644 , HOH C:1073
BINDING SITE FOR RESIDUE IOD C 630
26
CC8
SOFTWARE
ARG C:271
BINDING SITE FOR RESIDUE IOD C 631
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1oxsc1 (C:243-352)
2a: SCOP_d1oxsc2 (C:1-242)
View:
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Classes
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)
(
)
Folds
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(
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Superfamilies
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)
(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
MOP-like
(40)
Family
:
ABC-transporter additional domain
(24)
Protein domain
:
Glucose transport protein GlcV, N-terminal domain
(5)
Sulfolobus solfataricus [TaxId: 2287]
(5)
1a
d1oxsc1
C:243-352
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Glucose transport protein GlcV, N-terminal domain
(5)
Sulfolobus solfataricus [TaxId: 2287]
(5)
2a
d1oxsc2
C:1-242
[
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]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1oxsC01 (C:1-245)
2a: CATH_1oxsC03 (C:246-279,C:343-352)
3a: CATH_1oxsC02 (C:297-341)
View:
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Classes
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)
(
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Architectures
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(
)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Sulfolobus solfataricus. Organism_taxid: 2287.
(12)
1a
1oxsC01
C:1-245
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
2a
1oxsC03
C:246-279,C:343-352
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
3a
1oxsC02
C:297-341
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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All Atoms
Protein & NOT Variant
Protein & NOT Site
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Chain C
Asymmetric Unit 1
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