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(-) Description

Title :  CRYSTAL STRUCTURE OF SIGM54 ACTIVATOR (AAA+ ATPASE) IN THE ACTIVE STATE
 
Authors :  S. Y. Lee, A. De La Torre, S. Kustu, B. T. Nixon, D. E. Wemmer
Date :  11 Feb 03  (Deposition) - 11 Nov 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N
Biol. Unit 1:  A,B,C,D,E,F,G  (1x)
Biol. Unit 2:  H,I,J,K,L,M,N  (1x)
Keywords :  Aaa+ Atpase, Sigma54 Activator, Bacterial Transcription, Heptamer (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Y. Lee, A. De La Torre, D. Yan, S. Kustu, B. T. Nixon, D. E. Wemmer
Regulation Of The Transcriptional Activator Ntrc1: Structural Studies Of The Regulatory And Aaa+ Atpase Domains
Genes Dev. V. 17 2552 2003
PubMed-ID: 14561776  |  Reference-DOI: 10.1101/GAD.1125603
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR (NTRC FAMILY)
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 122-387
    Gene: NTRC1
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 63363

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric Unit : ABCDEFGHIJKLMN
Biological Unit 1 (1x): ABCDEFG       
Biological Unit 2 (1x):        HIJKLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 14)

Asymmetric Unit (1, 14)
No.NameCountTypeFull Name
1ADP14Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 1 (1, 7)
No.NameCountTypeFull Name
1ADP7Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 2 (1, 7)
No.NameCountTypeFull Name
1ADP7Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL C:140 , GLU C:168 , SER C:169 , GLY C:170 , VAL C:171 , GLY C:172 , LYS C:173 , GLU C:174 , VAL C:175 , VAL C:356 , ARG C:357 , LYS C:360BINDING SITE FOR RESIDUE ADP C 1
02AC2SOFTWARETYR D:139 , VAL D:140 , SER D:169 , GLY D:170 , VAL D:171 , GLY D:172 , LYS D:173 , GLU D:174 , VAL D:175 , VAL D:356 , ARG D:357BINDING SITE FOR RESIDUE ADP D 2
03AC3SOFTWAREVAL E:140 , GLU E:168 , GLY E:170 , VAL E:171 , GLY E:172 , LYS E:173 , GLU E:174 , VAL E:175 , VAL E:356 , ARG E:357 , LYS E:360BINDING SITE FOR RESIDUE ADP E 3
04AC4SOFTWAREVAL F:140 , GLY F:170 , VAL F:171 , GLY F:172 , LYS F:173 , GLU F:174 , VAL F:175 , LEU F:320 , VAL F:356 , ARG F:357 , LYS F:360BINDING SITE FOR RESIDUE ADP F 4
05AC5SOFTWAREVAL G:140 , SER G:169 , GLY G:170 , VAL G:171 , GLY G:172 , LYS G:173 , GLU G:174 , VAL G:175 , VAL G:356 , ARG G:357BINDING SITE FOR RESIDUE ADP G 5
06AC6SOFTWAREVAL A:140 , SER A:169 , GLY A:170 , VAL A:171 , GLY A:172 , LYS A:173 , GLU A:174 , VAL A:175 , LEU A:320 , VAL A:356 , ARG A:357 , LYS A:360BINDING SITE FOR RESIDUE ADP A 6
07AC7SOFTWAREGLY B:170 , VAL B:171 , GLY B:172 , LYS B:173 , GLU B:174 , VAL B:175 , LEU B:320 , VAL B:356 , ARG B:357 , LYS B:360BINDING SITE FOR RESIDUE ADP B 7
08AC8SOFTWARETYR I:139 , VAL I:140 , PHE I:141 , MET I:146 , GLU I:168 , GLY I:170 , VAL I:171 , GLY I:172 , LYS I:173 , GLU I:174 , VAL I:175 , VAL I:356 , ARG I:357 , LYS I:360BINDING SITE FOR RESIDUE ADP I 8
09AC9SOFTWAREVAL J:140 , GLY J:170 , VAL J:171 , GLY J:172 , LYS J:173 , GLU J:174 , VAL J:175 , VAL J:356 , ARG J:357 , LYS J:360BINDING SITE FOR RESIDUE ADP J 9
10BC1SOFTWAREVAL K:140 , SER K:169 , GLY K:170 , VAL K:171 , GLY K:172 , LYS K:173 , GLU K:174 , VAL K:175 , VAL K:356 , ARG K:357 , LYS K:360BINDING SITE FOR RESIDUE ADP K 10
11BC2SOFTWAREVAL L:140 , PHE L:141 , GLY L:170 , VAL L:171 , GLY L:172 , LYS L:173 , GLU L:174 , VAL L:175 , VAL L:356 , ARG L:357 , LYS L:360BINDING SITE FOR RESIDUE ADP L 11
12BC3SOFTWARETYR M:139 , VAL M:140 , PHE M:141 , GLY M:170 , VAL M:171 , GLY M:172 , LYS M:173 , GLU M:174 , VAL M:175 , VAL M:356 , ARG M:357 , LYS M:360BINDING SITE FOR RESIDUE ADP M 12
13BC4SOFTWAREVAL N:140 , GLU N:168 , GLY N:170 , VAL N:171 , GLY N:172 , LYS N:173 , GLU N:174 , VAL N:175 , VAL N:356BINDING SITE FOR RESIDUE ADP N 13
14BC5SOFTWAREPHE H:141 , GLU H:168 , GLY H:170 , VAL H:171 , GLY H:172 , LYS H:173 , GLU H:174 , VAL H:175 , VAL H:356 , ARG H:357 , LYS H:360 , GLU N:256BINDING SITE FOR RESIDUE ADP H 14

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NY6)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Tyr H:350 -Pro H:351

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NY6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1NY6)

(-) Exons   (0, 0)

(no "Exon" information available for 1NY6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:247
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       
         O67198_AQUAE   138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6a_ A: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                  SCOP domains
               CATH domains 1ny6A01 A:138-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                       1ny6A02 A:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhh.......eeee.....hhhhhhhhhhh..............hhhhhh...eeee.hhhhhhhhhhhhhhhhhhh.eee......eee...eeeeee..hhhhhhhhh..hhhhhhhhh.eeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh....hhhhhhhhhhhhhhhh...eehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 A 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       


Chain B from PDB  Type:PROTEIN  Length:243
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:243
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381   
         O67198_AQUAE   142 ESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6b_ B: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                              SCOP domains
               CATH domains 1ny6B01 B:142-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                   1ny6B02 B:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh..............hhhhhhhhhhhhh......eeeee.hhh..hhhhhhhhh..............hhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...ee......hhhhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh...hhhhhhhhhhhhhhhh....eehhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 B 142 ESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381   


Chain C from PDB  Type:PROTEIN  Length:248
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:248
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        
         O67198_AQUAE   137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6c_ C: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                   SCOP domains
               CATH domains 1ny6C01 C:137-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                        1ny6C02 C:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh........eeehhhhh...hhhhhhhh..............hhhhhh...eeeee.hhhhhhhhhhhhhhhhhh.ee........ee...eeeeee...hhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh...hhhhhhhhhhhhhhhh....eehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 C 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        


Chain D from PDB  Type:PROTEIN  Length:247
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:247
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       
         O67198_AQUAE   138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6d_ D: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                  SCOP domains
               CATH domains 1ny6D01 D:138-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                       1ny6D02 D:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhh........ee.....hhhhhhhhhhh..............hhhhhhh....ee.hhhhhhhhhhhhhhhhhhh.ee........ee...........hhhhhhhhh..hhhhhhhhhheeee..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh......hhhhhhhhhhhhhhh......hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 D 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       


Chain E from PDB  Type:PROTEIN  Length:248
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:248
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        
         O67198_AQUAE   137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6e_ E: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                   SCOP domains
               CATH domains 1ny6E01 E:137-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                        1ny6E02 E:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh..............hhhhhhhhhhhh.......ee.......hhhhhhhhhhh..............hhhhhh...ee........hhhhhhhhhhhhhhheee......eee...ee......hhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh...hhhhhhhhhhhhhhhhh...ee......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 E 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        


Chain F from PDB  Type:PROTEIN  Length:248
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:248
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        
         O67198_AQUAE   137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6f_ F: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                   SCOP domains
               CATH domains 1ny6F01 F:137-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                        1ny6F02 F:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhh........eeeee....hhhhhhhhhhh.............hhhhhhh...eeeee.hhhhhhhhhhhhhhhhhhheee......eee...eeeeee..hhhhhhhhh..hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhh........hhhhhhhhhhhhhhh...eehhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 F 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        


Chain G from PDB  Type:PROTEIN  Length:248
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:248
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        
         O67198_AQUAE   137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6g_ G: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                   SCOP domains
               CATH domains 1ny6G01 G:137-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                        1ny6G02 G:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhh......eeeee.......hhhhhh................hhhhhh...eeeee.hhhhhhhhhhhhhhhhhh.ee........ee...eeeeee..hhhhhhhh...hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhh.......hhhhhhhhhhhhhh....eehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 G 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        


Chain H from PDB  Type:PROTEIN  Length:245
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:245
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377     
         O67198_AQUAE   138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSC 382
               SCOP domains d1ny6h_ H: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                SCOP domains
               CATH domains 1ny6H01 H:138-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                       1ny6H02 H:311-382  [code=1.10.8.60, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh......eee....hhhhhhhhhhhhh......eeeee....hhhhhhhhh................hhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhee........ee...ee......hhhhhhhh...hhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.....hhhhhhhhhhhh........hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 H 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSC 382
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377     


Chain I from PDB  Type:PROTEIN  Length:247
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:247
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       
         O67198_AQUAE   138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6i_ I: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                  SCOP domains
               CATH domains 1ny6I01 I:138-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                       1ny6I02 I:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhee...........eehhhhhh...eeeee.hhhhhhhhhhhhhhhhhh.eee......eee...eeeeee..hhhhhhhhh..hhhhhhhhh.eeee..hhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhh......hhhhhhhhhhhhh......eehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 I 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       


Chain J from PDB  Type:PROTEIN  Length:247
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:247
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       
         O67198_AQUAE   138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6j_ J: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                  SCOP domains
               CATH domains 1ny6J01 J:138-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                       1ny6J02 J:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhh........eeeee....hhhhhhhhhh...............hhhhhh...eeeeehhhhhhhhhhhhhhhhhhhheee......eee...eee.....hhhhhhhh...hhhhhhhhhheeee..hhhhh..hhhhhhhhhhhhhhhhh.....eehhhhhhhhh.....hhhhhhhhhhhhhhhh....eehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 J 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       


Chain K from PDB  Type:PROTEIN  Length:248
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:248
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        
         O67198_AQUAE   137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6k_ K: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                   SCOP domains
               CATH domains 1ny6K01 K:137-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                        1ny6K02 K:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhh.............hhhhhhhhhhhh.......ee.......hhhhhhhhhhh..............hhhhhh...ee...hhhhhhhhhhhhhhhhhhhheee......eee...ee......hhhhhhhhh..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh....hhhhhhhhhhhhhhhh...eehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 K 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376        


Chain L from PDB  Type:PROTEIN  Length:246
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:246
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377      
         O67198_AQUAE   138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCL 383
               SCOP domains d1ny6l_ L: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                 SCOP domains
               CATH domains 1ny6L01 L:138-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                       1ny6L02 L:311-383  [code=1.10.8.60, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhh......eeee.....hhhhhhhhhhh..............hhhhhh...eeee......hhhhhhhhhhhhhhheee......eee...eeee....hhhhhhhh...hhhhhhhhh..eeee.hhhhh..hhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh...hhhhhhhhhhhhhhhh....ee..hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ny6 L 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCL 383
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377      


Chain M from PDB  Type:PROTEIN  Length:247
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:247
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       
         O67198_AQUAE   138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6m_ M: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                  SCOP domains
               CATH domains 1ny6M01 M:138-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                       1ny6M02 M:311-384  [code=1.10.8.60, no name defined]                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhhee...........eehhhhhhh...eeee.hhhhhhhhhhhhhhhhh..ee........ee....eeeee..hhhhhhhh...hhhhhhhhh..eeee.....hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhh...hhhhhhhhhhhhhhhhh.......hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 M 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       


Chain N from PDB  Type:PROTEIN  Length:247
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:247
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       
         O67198_AQUAE   138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains d1ny6n_ N: Transcriptional activator sigm54 (NtrC1), C-terminal domain                                                                                                                                                                                  SCOP domains
               CATH domains 1ny6N01 N:138-310 P-loop containing nucleotide triphosphate hydrolases                                                                                                       1ny6N02 N:311-384  [code=1.10.8.60, no name defined]                       CATH domains
           Pfam domains (1) -Sigma54_activat-1ny6N01 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) -Sigma54_activat-1ny6N02 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) -Sigma54_activat-1ny6N03 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) -Sigma54_activat-1ny6N04 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (4)
           Pfam domains (5) -Sigma54_activat-1ny6N05 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (5)
           Pfam domains (6) -Sigma54_activat-1ny6N06 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (6)
           Pfam domains (7) -Sigma54_activat-1ny6N07 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (7)
           Pfam domains (8) -Sigma54_activat-1ny6N08 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (8)
           Pfam domains (9) -Sigma54_activat-1ny6N09 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (9)
          Pfam domains (10) -Sigma54_activat-1ny6N10 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (10)
          Pfam domains (11) -Sigma54_activat-1ny6N11 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (11)
          Pfam domains (12) -Sigma54_activat-1ny6N12 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (12)
          Pfam domains (13) -Sigma54_activat-1ny6N13 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (13)
          Pfam domains (14) -Sigma54_activat-1ny6N14 N:139-306                                                                                                                                       ------------------------------------------------------------------------------ Pfam domains (14)
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhh.......eeeehhhhh.....hhhhhh..............hhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhee........ee...eeeeee..hhhhhhhh...hhhhhhhhhhhheee........hhhhhhhhhhhhhhhh........hhhhhhhhh.....hhhhhhhhhhhhhhhh.......hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ny6 N 138 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 14)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 28)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)
(-)
Aquifex aeolicus. Organism_taxid: 63363. (7)
1a1ny6C01C:137-310
1b1ny6K01K:137-310
1c1ny6A01A:138-310
1d1ny6D01D:138-310
1e1ny6H01H:138-310
1f1ny6I01I:138-310
1g1ny6J01J:138-310
1h1ny6L01L:138-310
1i1ny6M01M:138-310
1j1ny6N01N:138-310
1k1ny6B01B:142-310
1l1ny6E01E:137-310
1m1ny6F01F:137-310
1n1ny6G01G:137-310
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Orthogonal Bundle (10391)
(-)
Topology: Helicase, Ruva Protein; domain 3 (218)
(-)
Homologous Superfamily: [code=1.10.8.60, no name defined] (73)
(-)
Aquifex aeolicus. Organism_taxid: 63363. (5)
2a1ny6A02A:311-384
2b1ny6J02J:311-384
2c1ny6K02K:311-384
2d1ny6M02M:311-384
2e1ny6N02N:311-384
2f1ny6L02L:311-383
2g1ny6H02H:311-382
2h1ny6B02B:311-384
2i1ny6C02C:311-384
2j1ny6D02D:311-384
2k1ny6E02E:311-384
2l1ny6F02F:311-384
2m1ny6G02G:311-384
2n1ny6I02I:311-384

(-) Pfam Domains  (1, 14)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N   (O67198_AQUAE | O67198)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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  1ny6
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  O67198_AQUAE | O67198
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O67198_AQUAE | O67198: 1ny5 1zy2 3m0e 4bs1 4bt0 4bt1 4l4u 4l5e 4ly6 4lzz

(-) Related Entries Specified in the PDB File

1ny5 THE SAME PROTEIN WITH BOTH REGULATORY AND CENTRAL ATPASE DOMAINS IN THE INACTIVE STATE.