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(-) Description

Title :  MUB IS AN AAAPLUS ATPASE THAT FORMS HELICAL FILAMENTS TO CONTROL TARGET SELECTION FOR DNA TRANSPOSITION
 
Authors :  N. Mizuno, M. Dramicanin, M. Mizuuchi, J. Adam, Y. Wang, Y. W. Han, W. Yan A. C. Steven, K. Mizuuchi, S. Ramon-Maiques
Date :  06 Jun 13  (Deposition) - 03 Jul 13  (Release) - 19 Apr 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  18.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (7x)
Keywords :  Hydrolase, Aaa+ Dna Transposition, Nucleoprotein Filament, Symmetry Mismatch (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Mizuno, M. Dramicanin, M. Mizuuchi, J. Adam, Y. Wang, Y. W. Han, W. Yang, A. C. Steven, K. Mizuuchi, S. Ramon-Maiques
Mub Is An Aaa+ Atpase That Forms Helical Filaments To Control Target Selection For Dna Transposition.
Proc. Natl. Acad. Sci. Usa V. 110 E2441 2013
PubMed-ID: 23776210  |  Reference-DOI: 10.1073/PNAS.1309499110

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR (NTRC FAMILY)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 312-384
    Organism Scientific: ENTEROBACTERIA PHAGE MU
    Organism Taxid: 10677
    Other Details: MODIFIED FROM 1NY6
    Synonym: MUB AAAPLUS ATPASE
 
Molecule 2 - TRANSCRIPTIONAL REGULATOR (NTRC FAMILY)
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 137-309
    Organism Scientific: ENTEROBACTERIA PHAGE MU
    Organism Taxid: 10677
    Other Details: MODIFIED FROM 1NY6
    Synonym: MUB AAAPLUS ATPASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (7x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ADP-1Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:320 , VAL A:356 , ARG A:357 , LYS A:360BINDING SITE FOR RESIDUE ADP A 6
2AC2SOFTWAREVAL B:140 , SER B:169 , GLY B:170 , VAL B:171 , GLY B:172 , LYS B:173 , GLU B:174 , VAL B:175BINDING SITE FOR RESIDUE ADP B 5

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BS1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4BS1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BS1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BS1)

(-) Exons   (0, 0)

(no "Exon" information available for 4BS1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:73
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:73
                                   321       331       341       351       361       371       381   
         O67198_AQUAE   312 ERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh....hhhhhhhhhhhhhhhh...eehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4bs1 A 312 ERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 384
                                   321       331       341       351       361       371       381   


Chain B from PDB  Type:PROTEIN  Length:173
 aligned with O67198_AQUAE | O67198 from UniProtKB/TrEMBL  Length:439

    Alignment length:173
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306   
         O67198_AQUAE   137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPP 309
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhh......eeeee.......hhhhhh................hhhhhh...eeeee.hhhhhhhhhhhhhhhhhh.ee........ee...eeeeee..hhhhhhhh...hhhhhhhhh.eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4bs1 B 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPP 309
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BS1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BS1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BS1)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (O67198_AQUAE | O67198)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0008134    transcription factor binding    Interacting selectively and non-covalently with a transcription factor, any protein required to initiate or regulate transcription.
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

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UniProtKB/TrEMBL
        O67198_AQUAE | O67198: 1ny5 1ny6 1zy2 3m0e 4bt0 4bt1 4l4u 4l5e 4ly6 4lzz

(-) Related Entries Specified in the PDB File

4bt0 MUB IS AN AAAPLUS ATPASE THAT FORMS HELICAL FILAMENTS TO CONTROL TARGET SELECTION FOR DNA TRANSPOSITION
4bt1 MUB IS AN AAAPLUS ATPASE THAT FORMS HELICAL FILAMENTS TO CONTROL TARGET SELECTION FOR DNA TRANSPOSITION