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(-) Description

Title :  FIBRIN D-DIMER, LAMPREY COMPLEXED WITH THE PEPTIDE LIGAND: GLY-HIS-ARG-PRO-AMIDE
 
Authors :  Z. Yang, L. Pandi, R. F. Doolittle
Date :  12 Nov 02  (Deposition) - 07 Jan 03  (Release) - 08 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Isopeptide Cross-Linked Chains; Protein-Peptide Complex, Blood Clotting (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Yang, L. Pandi, R. F. Doolittle
The Crystal Structure Of Fragment Double-D From Cross-Linke Lamprey Fibrin Reveals Isopeptide Linkages Across An Unexpected D-D Interface
Biochemistry V. 41 15610 2002
PubMed-ID: 12501189  |  Reference-DOI: 10.1021/BI026666I

(-) Compounds

Molecule 1 - FIBRIN ALPHA-1 CHAIN
    ChainsA, D
    Organism CommonSEA LAMPREY
    Organism ScientificPETROMYZON MARINUS
    Organism Taxid7757
    TissueBLOOD
 
Molecule 2 - FIBRIN BETA CHAIN
    ChainsB, E
    Organism CommonSEA LAMPREY
    Organism ScientificPETROMYZON MARINUS
    Organism Taxid7757
    TissueBLOOD
 
Molecule 3 - FIBRIN GAMMA CHAIN
    ChainsC, F
    Organism CommonSEA LAMPREY
    Organism ScientificPETROMYZON MARINUS
    Organism Taxid7757
    TissueBLOOD
 
Molecule 4
    ChainsG, H, I, J
    EngineeredYES
    Other DetailsSYNTHETIC PEPTIDE THAT OCCURS NATURALLY IN HUMANS.
    SyntheticYES

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET B:381 , ASN B:384BINDING SITE FOR RESIDUE NAG B 480
2AC2SOFTWAREMET E:381 , ASN E:384 , HIS J:2BINDING SITE FOR RESIDUE NAG E 480
3AC3SOFTWAREASN C:203BINDING SITE FOR RESIDUE NAG C 480
4AC4SOFTWAREASN F:203BINDING SITE FOR RESIDUE NAG F 480
5AC5SOFTWAREASP C:316 , ASP C:318 , TYR C:320 , GLY C:322BINDING SITE FOR RESIDUE CA C 1
6AC6SOFTWAREASP F:316 , ASP F:318 , TYR F:320 , GLY F:322BINDING SITE FOR RESIDUE CA F 2
7AC7SOFTWAREASP B:401 , ASP B:403 , TRP B:405 , ASN B:406 , LYS B:412BINDING SITE FOR RESIDUE CA B 3
8AC8SOFTWAREASP E:401 , ASP E:403 , TRP E:405 , ASN E:406 , LYS E:412BINDING SITE FOR RESIDUE CA E 4

(-) SS Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1A:154 -C:134
2A:158 -B:214
3B:218 -C:138
4B:222 -B:306
5B:232 -B:261
6B:414 -B:427
7C:154 -C:183
8C:324 -C:337
9D:154 -F:134
10D:158 -E:214
11E:218 -F:138
12E:222 -E:306
13E:232 -E:261
14E:414 -E:427
15F:154 -F:183
16F:324 -F:337

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1N73)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N73)

(-) PROSITE Motifs  (2, 8)

Asymmetric/Biological Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FIBRINOGEN_C_2PS51406 Fibrinogen C-terminal domain profile.FIBG_PETMA169-412
 
  2C:145-388
F:145-388
FIBB_PETMA221-476
 
  2B:223-477
E:223-477
2FIBRINOGEN_C_1PS00514 Fibrinogen C-terminal domain signature.FIBG_PETMA356-368
 
  2C:332-344
F:332-344
FIBB_PETMA420-432
 
  2B:422-434
E:422-434

(-) Exons   (0, 0)

(no "Exon" information available for 1N73)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:91
 aligned with FIBA1_PETMA | P02674 from UniProtKB/Swiss-Prot  Length:966

    Alignment length:91
                                   117       127       137       147       157       167       177       187       197 
          FIBA1_PETMA   108 EVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRTCKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 198
               SCOP domains d1n73a_ A: Fibrinogen alpha chain                                                           SCOP domains
               CATH domains 1n73A00 A:103-193  [code=1.20.5.50, no name defined]                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhh..hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 1n73 A 103 EVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRACKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 193
                                   112       122       132       142       152       162       172       182       192 

Chain B from PDB  Type:PROTEIN  Length:315
 aligned with FIBB_PETMA | P02678 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:315
                                   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
           FIBB_PETMA   161 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 475
               SCOP domains d1n73b2 B:163-218 Fibrinogen beta chain                 d1n73b1 B:219-477 Fibrinogen C-terminal domains                                                                                                                                                                                                                     SCOP domains
               CATH domains 1n73B03 B:163-222  [code=1.20.5.50, no name defined]        1n73B01 B:223-369,B:469-477 Gamma Fibrinogen, chain A, domain 1                                                                                    1n73B02 B:370-468 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                            1n73B01   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...ee.....hhhhhhhhh....eeeee........eeeeee.......eeeeeee.........hhhhhhheee..ee........ee..eeehhhhhhhhhhhh.eeeeeeee.....eeeeeeeeeee.hhhhh..eeeeeeee.............hhhhhhh.........................hhhhhh...........ee........................eehhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------FIBRINOGEN_C_2  PDB: B:223-477 UniProt: 221-476                                                                                                                                                                                                                 PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------- PROSITE (1)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n73 B 163 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 477
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472     

Chain C from PDB  Type:PROTEIN  Length:322
 aligned with FIBG_PETMA | P04115 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:322
                                   116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426  
           FIBG_PETMA   107 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRSCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHGGQQQSKGNS 428
               SCOP domains d1n73c2 C:83-137 Fibrinogen gamma chain                d1n73c1 C:138-404 Fibrinogen C-terminal domains                                                                                                                                                                                                                             SCOP domains
               CATH domains 1n73C03 C:83-144  [code=1.20.5.50, no name defined]           1n73C01 C:145-284,C:379-389 Gamma Fibrinogen, chain A, domain 1                                                                             1n73C02 C:285-378 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                       1n73C01    --------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhh......hhhhhhhh.....eeeee........eeeeeeee..eeeeeeeee.........hhhhhhhheeee.......ee.hhhhhhhhhhhh.eeeeeeee.....eeeeeee..ee.hhhhh..ee..eeee....hhhhh.......hhhhhh...................hhhhhhh.................................................eeeeeeee.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------FIBRINOGEN_C_2  PDB: C:145-388 UniProt: 169-412                                                                                                                                                                                                     ---------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------------------------ PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n73 C  83 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRSCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHGGQQQSKGNS 404
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402  

Chain D from PDB  Type:PROTEIN  Length:90
 aligned with FIBA1_PETMA | P02674 from UniProtKB/Swiss-Prot  Length:966

    Alignment length:90
                                   115       125       135       145       155       165       175       185       195
          FIBA1_PETMA   106 YSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRTCKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFE 195
               SCOP domains d1n73d_ D: Fibrinogen alpha chain                                                          SCOP domains
               CATH domains 1n73D00 D:101-190  [code=1.20.5.50, no name defined]                                       CATH domains
           Pfam domains (1) Fib_alpha-1n73D01 D:101-167                                        ----------------------- Pfam domains (1)
           Pfam domains (2) Fib_alpha-1n73D02 D:101-167                                        ----------------------- Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 1n73 D 101 YSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRACKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFE 190
                                   110       120       130       140       150       160       170       180       190

Chain E from PDB  Type:PROTEIN  Length:315
 aligned with FIBB_PETMA | P02678 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:315
                                   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
           FIBB_PETMA   161 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 475
               SCOP domains d1n73e2 E:163-218 Fibrinogen beta chain                 d1n73e1 E:219-477 Fibrinogen C-terminal domains                                                                                                                                                                                                                     SCOP domains
               CATH domains 1n73E03 E:163-222  [code=1.20.5.50, no name defined]        1n73E01 E:223-369,E:469-477 Gamma Fibrinogen, chain A, domain 1                                                                                    1n73E02 E:370-468 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                            1n73E01   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee...ee.....hhhhhhhhh....eeeee........eeeeee.......eeeeeee.........hhhhhhheee..ee........ee..eeehhhhhhhhhhhh.eeeeeeee.....eeeeeeeeeee.hhhhh..eeeeeeee.............hhhhhhh.........................hhhhhh...........ee........................eehhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------FIBRINOGEN_C_2  PDB: E:223-477 UniProt: 221-476                                                                                                                                                                                                                 PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------- PROSITE (1)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n73 E 163 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 477
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472     

Chain F from PDB  Type:PROTEIN  Length:322
 aligned with FIBG_PETMA | P04115 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:322
                                   116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426  
           FIBG_PETMA   107 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRSCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHGGQQQSKGNS 428
               SCOP domains d1n73f2 F:83-137 Fibrinogen gamma chain                d1n73f1 F:138-404 Fibrinogen C-terminal domains                                                                                                                                                                                                                             SCOP domains
               CATH domains 1n73F03 F:83-144  [code=1.20.5.50, no name defined]           1n73F01 F:145-284,F:379-389 Gamma Fibrinogen, chain A, domain 1                                                                             1n73F02 F:285-378 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                       1n73F01    --------------- CATH domains
           Pfam domains (1) Fib_alpha-1n73F03 F:83-148                                        -Fibrinogen_C-1n73F01 F:150-387                                                                                                                                                                                                                ----------------- Pfam domains (1)
           Pfam domains (2) Fib_alpha-1n73F04 F:83-148                                        -Fibrinogen_C-1n73F02 F:150-387                                                                                                                                                                                                                ----------------- Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhh......hhhhhhhh.....eeeee........eeeeeeee..eeeeeeeee.........hhhhhhhheeee.......ee.hhhhhhhhhhhh.eeeeeeee.....eeeeeee..ee.hhhhh..ee..eeee....hhhhh.......hhhhhh...................hhhhhhh.................................................eeeeeeee.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------FIBRINOGEN_C_2  PDB: F:145-388 UniProt: 169-412                                                                                                                                                                                                     ---------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------------------------ PROSITE (3)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n73 F  83 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRSCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHGGQQQSKGNS 404
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402  

Chain G from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 1n73 G   1 GHRP   4

Chain H from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 1n73 H   1 GHRP   4

Chain I from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 1n73 I   1 GHRP   4

Chain J from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 1n73 J   1 GHRP   4

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 10)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 14)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 6)

Asymmetric/Biological Unit

(-) Gene Ontology  (10, 28)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,D   (FIBA1_PETMA | P02674)
molecular function
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005577    fibrinogen complex    A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds.

Chain B,E   (FIBB_PETMA | P02678)
molecular function
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005577    fibrinogen complex    A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds.

Chain C,F   (FIBG_PETMA | P04115)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005577    fibrinogen complex    A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FIBA1_PETMA | P026741lwu
        FIBB_PETMA | P026781lwu
        FIBG_PETMA | P041151lwu

(-) Related Entries Specified in the PDB File

1fzc FIBRIN DOUBLE-D,HUMAN, WITH GPRPAM AND GHRPAM LIGANDS
1fzf FIBRIN DOUBLE-D, HUMAN, WITH GHRPAM LIGAND
1lwu FIBRINOGEN FRAGMENT D, LAMPREY
1n86 FRAGMENT DOUBLE-D FROM HUMAN FIBRIN COMPLEXED WITH GPR AND GHRPLDK PEPTIDE LIGANDS
1n8e FRAGMENT DOUBLE-D FROM HUMAN FIBRIN