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Sequence, Chains, Asymmetric and Biological Units

Title FIBRIN D-DIMER, LAMPREY COMPLEXED WITH THE PEPTIDE LIGAND: G ARG-PRO-AMIDE
Keywords ISOPEPTIDE CROSS-LINKED CHAINS; PROTEIN-PEPTIDE COMPLEX, BLO CLOTTING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1N73     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FIBRIN ALPHA-1 CHAIN  A 91 763 0
2  Protein   FIBRIN BETA CHAIN  B 315 2535 0
3  Protein   FIBRIN GAMMA CHAIN  C 322 2630 0
4  Protein   FIBRIN ALPHA-1 CHAIN  D 90 758 0
5  Protein   FIBRIN BETA CHAIN  E 315 2535 0
6  Protein   FIBRIN GAMMA CHAIN  F 322 2630 0
7  Protein   PEPTIDE LIGAND: GLY-HIS-ARG-PRO-AMIDE  G 4 32 0
8  Protein   PEPTIDE LIGAND: GLY-HIS-ARG-PRO-AMIDE  H 4 32 0
9  Protein   PEPTIDE LIGAND: GLY-HIS-ARG-PRO-AMIDE  I 4 32 0
10  Protein   PEPTIDE LIGAND: GLY-HIS-ARG-PRO-AMIDE  J 4 32 0
11  Ligand   FIBRIN BETA CHAIN  B 2 0 15
12  Ligand   FIBRIN GAMMA CHAIN  C 2 0 15
13  Ligand   FIBRIN BETA CHAIN  E 2 0 15
14  Ligand   FIBRIN GAMMA CHAIN  F 2 0 15
total       1479 11979 60
Proteins
Unit 1 GLU103 VAL104 LEU105 ARG106 GLU107 LEU108 GLU109 ARG110 ARG111 ILE112 ILE113 HIS114 LEU115 GLN116 ARG117 ARG118 ILE119 ASN120 MET121 GLN122 LEU123 GLN124 GLN125 LEU126 THR127 LEU128 LEU129 GLN130 HIS131 ASN132 ILE133 LYS134 THR135 GLN136 VAL137 SER138 GLN139 ILE140 LEU141 ARG142 VAL143 GLU144 VAL145 ASP146 ILE147 ASP148 VAL149 ALA150 LEU151 ARG152 ALA153 CYS154 LYS155 GLY156 SER157 CYS158 ALA159 ARG160 TYR161 LEU162 GLU163 TYR164 ARG165 LEU166 ASP167 LYS168 GLU169 LYS170 ASN171 LEU172 GLN173 LEU174 GLU175 LYS176 ALA177 ALA178 SER179 TYR180 ILE181 ALA182 ASN183 LEU184 LYS185 PHE186 GLU187 ARG188 PHE189 GLU190 GLU191 VAL192 VAL193
Unit 2 ALA163 GLN164 LYS165 GLU166 ILE167 GLU168 ASN169 ARG170 TYR171 LYS172 GLU173 VAL174 LYS175 ILE176 ARG177 ILE178 GLU179 SER180 THR181 VAL182 ALA183 GLY184 SER185 LEU186 ARG187 SER188 MET189 LYS190 SER191 VAL192 LEU193 GLU194 HIS195 LEU196 ARG197 ALA198 LYS199 MET200 GLN201 ARG202 MET203 GLU204 GLU205 ALA206 ILE207 LYS208 THR209 GLN210 LYS211 GLU212 LEU213 CYS214 SER215 ALA216 PRO217 CYS218 THR219 VAL220 ASN221 CYS222 ARG223 VAL224 PRO225 VAL226 VAL227 SER228 GLY229 MET230 HIS231 CYS232 GLU233 ASP234 ILE235 TYR236 ARG237 ASN238 GLY239 GLY240 ARG241 THR242 SER243 GLU244 ALA245 TYR246 TYR247 ILE248 GLN249 PRO250 ASP251 LEU252 PHE253 SER254 GLU255 PRO256 TYR257 LYS258 VAL259 PHE260 CYS261 ASP262 MET263 GLU264 SER265 HIS266 GLY267 GLY268 GLY269 TRP270 THR271 VAL272 VAL273 GLN274 ASN275 ARG276 VAL277 ASP278 GLY279 SER280 SER281 ASN282 PHE283 ALA284 ARG285 ASP286 TRP287 ASN288 THR289 TYR290 LYS291 ALA292 GLU293 PHE294 GLY295 ASN296 ILE297 ALA298 PHE299 GLY300 ASN301 GLY302 LYS303 SER304 ILE305 CYS306 ASN307 ILE308 PRO309 GLY310 GLU311 TYR312 TRP313 LEU314 GLY315 THR316 LYS317 THR318 VAL319 HIS320 GLN321 LEU322 THR323 LYS324 GLN325 HIS326 THR327 GLN328 GLN329 VAL330 LEU331 PHE332 ASP333 MET334 SER335 ASP336 TRP337 GLU338 GLY339 SER340 SER341 VAL342 TYR343 ALA344 GLN345 TYR346 ALA347 SER348 PHE349 ARG350 PRO351 GLU352 ASN353 GLU354 ALA355 GLN356 GLY357 TYR358 ARG359 LEU360 TRP361 VAL362 GLU363 ASP364 TYR365 SER366 GLY367 ASN368 ALA369 GLY370 ASN371 ALA372 LEU373 LEU374 GLU375 GLY376 ALA377 THR378 GLN379 LEU380 MET381 GLY382 ASP383 ASN384 ARG385 THR386 MET387 THR388 ILE389 HIS390 ASN391 GLY392 MET393 GLN394 PHE395 SER396 THR397 PHE398 ASP399 ARG400 ASP401 ASN402 ASP403 ASN404 TRP405 ASN406 PRO407 GLY408 ASP409 PRO410 THR411 LYS412 HIS413 CYS414 SER415 ARG416 GLU417 ASP418 ALA419 GLY420 GLY421 TRP422 TRP423 TYR424 ASN425 ARG426 CYS427 HIS428 ALA429 ALA430 ASN431 PRO432 ASN433 GLY434 ARG435 TYR436 TYR437 TRP438 GLY439 GLY440 ILE441 TYR442 THR443 LYS444 GLU445 GLN446 ALA447 ASP448 TYR449 GLY450 THR451 ASP452 ASP453 GLY454 VAL455 VAL456 TRP457 MET458 ASN459 TRP460 LYS461 GLY462 SER463 TRP464 TYR465 SER466 MET467 ARG468 GLN469 MET470 ALA471 MET472 LYS473 LEU474 ARG475 PRO476 LYS477
Unit 3 LYS83 THR84 VAL85 GLN86 LYS87 ILE88 LEU89 GLU90 GLU91 VAL92 ARG93 ILE94 LEU95 GLU96 GLN97 ILE98 GLY99 VAL100 SER101 HIS102 ASP103 ALA104 GLN105 ILE106 GLN107 GLU108 LEU109 SER110 GLU111 MET112 TRP113 ARG114 VAL115 ASN116 GLN117 GLN118 PHE119 VAL120 THR121 ARG122 LEU123 GLN124 GLN125 GLN126 LEU127 VAL128 ASP129 ILE130 ARG131 GLN132 THR133 CYS134 SER135 ARG136 SER137 CYS138 GLN139 ASP140 THR141 THR142 ALA143 ASN144 LYS145 ILE146 SER147 PRO148 ILE149 THR150 GLY151 LYS152 ASP153 CYS154 GLN155 GLN156 VAL157 VAL158 ASP159 ASN160 GLY161 GLY162 LYS163 ASP164 SER165 GLY166 LEU167 TYR168 TYR169 ILE170 LYS171 PRO172 LEU173 LYS174 ALA175 LYS176 GLN177 PRO178 PHE179 LEU180 VAL181 PHE182 CYS183 GLU184 ILE185 GLU186 ASN187 GLY188 ASN189 GLY190 TRP191 THR192 VAL193 ILE194 GLN195 HIS196 ARG197 HIS198 ASP199 GLY200 SER201 VAL202 ASN203 PHE204 THR205 ARG206 ASP207 TRP208 VAL209 SER210 TYR211 ARG212 GLU213 GLY214 PHE215 GLY216 TYR217 LEU218 ALA219 PRO220 THR221 LEU222 THR223 THR224 GLU225 PHE226 TRP227 LEU228 GLY229 ASN230 GLU231 LYS232 ILE233 HIS234 LEU235 LEU236 THR237 GLY238 GLN239 GLN240 ALA241 TYR242 ARG243 LEU244 ARG245 ILE246 ASP247 LEU248 THR249 ASP250 TRP251 GLU252 ASN253 THR254 HIS255 ARG256 TYR257 ALA258 ASP259 TYR260 GLY261 HIS262 PHE263 LYS264 LEU265 THR266 PRO267 GLU268 SER269 ASP270 GLU271 TYR272 ARG273 LEU274 PHE275 TYR276 SER277 MET278 TYR279 LEU280 ASP281 GLY282 ASP283 ALA284 GLY285 ASN286 ALA287 PHE288 ASP289 GLY290 PHE291 ASP292 PHE293 GLY294 ASP295 ASP296 PRO297 GLN298 ASP299 LYS300 PHE301 TYR302 THR303 THR304 HIS305 LEU306 GLY307 MET308 LEU309 PHE310 SER311 THR312 PRO313 GLU314 ARG315 ASP316 ASN317 ASP318 LYS319 TYR320 GLU321 GLY322 SER323 CYS324 ALA325 GLU326 GLN327 ASP328 GLY329 SER330 GLY331 TRP332 TRP333 MET334 ASN335 ARG336 CYS337 HIS338 ALA339 GLY340 HIS341 LEU342 ASN343 GLY344 LYS345 TYR346 TYR347 PHE348 GLY349 GLY350 ASN351 TYR352 ARG353 LYS354 THR355 ASP356 VAL357 GLU358 PHE359 PRO360 TYR361 ASP362 ASP363 GLY364 ILE365 ILE366 TRP367 ALA368 THR369 TRP370 HIS371 ASP372 ARG373 TRP374 TYR375 SER376 LEU377 LYS378 MET379 THR380 THR381 MET382 LYS383 LEU384 LEU385 PRO386 MET387 GLY388 ARG389 ASP390 LEU391 SER392 GLY393 HIS394 GLY395 GLY396 GLN397 GLN398 GLN399 SER400 LYS401 GLY402 ASN403 SER404
Unit 4 TYR101 SER102 GLU103 VAL104 LEU105 ARG106 GLU107 LEU108 GLU109 ARG110 ARG111 ILE112 ILE113 HIS114 LEU115 GLN116 ARG117 ARG118 ILE119 ASN120 MET121 GLN122 LEU123 GLN124 GLN125 LEU126 THR127 LEU128 LEU129 GLN130 HIS131 ASN132 ILE133 LYS134 THR135 GLN136 VAL137 SER138 GLN139 ILE140 LEU141 ARG142 VAL143 GLU144 VAL145 ASP146 ILE147 ASP148 VAL149 ALA150 LEU151 ARG152 ALA153 CYS154 LYS155 GLY156 SER157 CYS158 ALA159 ARG160 TYR161 LEU162 GLU163 TYR164 ARG165 LEU166 ASP167 LYS168 GLU169 LYS170 ASN171 LEU172 GLN173 LEU174 GLU175 LYS176 ALA177 ALA178 SER179 TYR180 ILE181 ALA182 ASN183 LEU184 LYS185 PHE186 GLU187 ARG188 PHE189 GLU190
Unit 5 ALA163 GLN164 LYS165 GLU166 ILE167 GLU168 ASN169 ARG170 TYR171 LYS172 GLU173 VAL174 LYS175 ILE176 ARG177 ILE178 GLU179 SER180 THR181 VAL182 ALA183 GLY184 SER185 LEU186 ARG187 SER188 MET189 LYS190 SER191 VAL192 LEU193 GLU194 HIS195 LEU196 ARG197 ALA198 LYS199 MET200 GLN201 ARG202 MET203 GLU204 GLU205 ALA206 ILE207 LYS208 THR209 GLN210 LYS211 GLU212 LEU213 CYS214 SER215 ALA216 PRO217 CYS218 THR219 VAL220 ASN221 CYS222 ARG223 VAL224 PRO225 VAL226 VAL227 SER228 GLY229 MET230 HIS231 CYS232 GLU233 ASP234 ILE235 TYR236 ARG237 ASN238 GLY239 GLY240 ARG241 THR242 SER243 GLU244 ALA245 TYR246 TYR247 ILE248 GLN249 PRO250 ASP251 LEU252 PHE253 SER254 GLU255 PRO256 TYR257 LYS258 VAL259 PHE260 CYS261 ASP262 MET263 GLU264 SER265 HIS266 GLY267 GLY268 GLY269 TRP270 THR271 VAL272 VAL273 GLN274 ASN275 ARG276 VAL277 ASP278 GLY279 SER280 SER281 ASN282 PHE283 ALA284 ARG285 ASP286 TRP287 ASN288 THR289 TYR290 LYS291 ALA292 GLU293 PHE294 GLY295 ASN296 ILE297 ALA298 PHE299 GLY300 ASN301 GLY302 LYS303 SER304 ILE305 CYS306 ASN307 ILE308 PRO309 GLY310 GLU311 TYR312 TRP313 LEU314 GLY315 THR316 LYS317 THR318 VAL319 HIS320 GLN321 LEU322 THR323 LYS324 GLN325 HIS326 THR327 GLN328 GLN329 VAL330 LEU331 PHE332 ASP333 MET334 SER335 ASP336 TRP337 GLU338 GLY339 SER340 SER341 VAL342 TYR343 ALA344 GLN345 TYR346 ALA347 SER348 PHE349 ARG350 PRO351 GLU352 ASN353 GLU354 ALA355 GLN356 GLY357 TYR358 ARG359 LEU360 TRP361 VAL362 GLU363 ASP364 TYR365 SER366 GLY367 ASN368 ALA369 GLY370 ASN371 ALA372 LEU373 LEU374 GLU375 GLY376 ALA377 THR378 GLN379 LEU380 MET381 GLY382 ASP383 ASN384 ARG385 THR386 MET387 THR388 ILE389 HIS390 ASN391 GLY392 MET393 GLN394 PHE395 SER396 THR397 PHE398 ASP399 ARG400 ASP401 ASN402 ASP403 ASN404 TRP405 ASN406 PRO407 GLY408 ASP409 PRO410 THR411 LYS412 HIS413 CYS414 SER415 ARG416 GLU417 ASP418 ALA419 GLY420 GLY421 TRP422 TRP423 TYR424 ASN425 ARG426 CYS427 HIS428 ALA429 ALA430 ASN431 PRO432 ASN433 GLY434 ARG435 TYR436 TYR437 TRP438 GLY439 GLY440 ILE441 TYR442 THR443 LYS444 GLU445 GLN446 ALA447 ASP448 TYR449 GLY450 THR451 ASP452 ASP453 GLY454 VAL455 VAL456 TRP457 MET458 ASN459 TRP460 LYS461 GLY462 SER463 TRP464 TYR465 SER466 MET467 ARG468 GLN469 MET470 ALA471 MET472 LYS473 LEU474 ARG475 PRO476 LYS477
Unit 6 LYS83 THR84 VAL85 GLN86 LYS87 ILE88 LEU89 GLU90 GLU91 VAL92 ARG93 ILE94 LEU95 GLU96 GLN97 ILE98 GLY99 VAL100 SER101 HIS102 ASP103 ALA104 GLN105 ILE106 GLN107 GLU108 LEU109 SER110 GLU111 MET112 TRP113 ARG114 VAL115 ASN116 GLN117 GLN118 PHE119 VAL120 THR121 ARG122 LEU123 GLN124 GLN125 GLN126 LEU127 VAL128 ASP129 ILE130 ARG131 GLN132 THR133 CYS134 SER135 ARG136 SER137 CYS138 GLN139 ASP140 THR141 THR142 ALA143 ASN144 LYS145 ILE146 SER147 PRO148 ILE149 THR150 GLY151 LYS152 ASP153 CYS154 GLN155 GLN156 VAL157 VAL158 ASP159 ASN160 GLY161 GLY162 LYS163 ASP164 SER165 GLY166 LEU167 TYR168 TYR169 ILE170 LYS171 PRO172 LEU173 LYS174 ALA175 LYS176 GLN177 PRO178 PHE179 LEU180 VAL181 PHE182 CYS183 GLU184 ILE185 GLU186 ASN187 GLY188 ASN189 GLY190 TRP191 THR192 VAL193 ILE194 GLN195 HIS196 ARG197 HIS198 ASP199 GLY200 SER201 VAL202 ASN203 PHE204 THR205 ARG206 ASP207 TRP208 VAL209 SER210 TYR211 ARG212 GLU213 GLY214 PHE215 GLY216 TYR217 LEU218 ALA219 PRO220 THR221 LEU222 THR223 THR224 GLU225 PHE226 TRP227 LEU228 GLY229 ASN230 GLU231 LYS232 ILE233 HIS234 LEU235 LEU236 THR237 GLY238 GLN239 GLN240 ALA241 TYR242 ARG243 LEU244 ARG245 ILE246 ASP247 LEU248 THR249 ASP250 TRP251 GLU252 ASN253 THR254 HIS255 ARG256 TYR257 ALA258 ASP259 TYR260 GLY261 HIS262 PHE263 LYS264 LEU265 THR266 PRO267 GLU268 SER269 ASP270 GLU271 TYR272 ARG273 LEU274 PHE275 TYR276 SER277 MET278 TYR279 LEU280 ASP281 GLY282 ASP283 ALA284 GLY285 ASN286 ALA287 PHE288 ASP289 GLY290 PHE291 ASP292 PHE293 GLY294 ASP295 ASP296 PRO297 GLN298 ASP299 LYS300 PHE301 TYR302 THR303 THR304 HIS305 LEU306 GLY307 MET308 LEU309 PHE310 SER311 THR312 PRO313 GLU314 ARG315 ASP316 ASN317 ASP318 LYS319 TYR320 GLU321 GLY322 SER323 CYS324 ALA325 GLU326 GLN327 ASP328 GLY329 SER330 GLY331 TRP332 TRP333 MET334 ASN335 ARG336 CYS337 HIS338 ALA339 GLY340 HIS341 LEU342 ASN343 GLY344 LYS345 TYR346 TYR347 PHE348 GLY349 GLY350 ASN351 TYR352 ARG353 LYS354 THR355 ASP356 VAL357 GLU358 PHE359 PRO360 TYR361 ASP362 ASP363 GLY364 ILE365 ILE366 TRP367 ALA368 THR369 TRP370 HIS371 ASP372 ARG373 TRP374 TYR375 SER376 LEU377 LYS378 MET379 THR380 THR381 MET382 LYS383 LEU384 LEU385 PRO386 MET387 GLY388 ARG389 ASP390 LEU391 SER392 GLY393 HIS394 GLY395 GLY396 GLN397 GLN398 GLN399 SER400 LYS401 GLY402 ASN403 SER404
Unit 7 GLY1 HIS2 ARG3 PRO4
Unit 8 GLY1 HIS2 ARG3 PRO4
Unit 9 GLY1 HIS2 ARG3 PRO4
Unit 10 GLY1 HIS2 ARG3 PRO4
Ligands
Unit 11 CA3 NAG480
Unit 12 CA1 NAG480
Unit 13 CA4 NAG480
Unit 14 CA2 NAG480
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany