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(-) Description

Title :  CRYSTAL STRUCTURE OF FRAGMENT D FROM LAMPREY FIBRINOGEN COMPLEXED WITH THE PEPTIDE GLY-HIS-ARG-PRO-AMIDE
 
Authors :  Z. Yang, G. Spraggon, L. Pandi, S. J. Everse, M. Riley, R. F. Doolittle
Date :  03 Jun 02  (Deposition) - 23 Aug 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,J,K,L,M,P  (1x)
Biol. Unit 2:  D,E,F,G,H,I,N,O  (1x)
Keywords :  Heterotrimer, Protein-Peptide Complex, Blood Clotting (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Yang, G. Spraggon, L. Pandi, S. J. Everse, M. Riley, R. F. Doolittle
Crystal Structure Of Fragment D From Lamprey Fibrinogen Complexed With The Peptide Gly-His-Arg-Pro-Amide.
Biochemistry V. 41 10218 2002
PubMed-ID: 12162736  |  Reference-DOI: 10.1021/BI020299T

(-) Compounds

Molecule 1 - FIBRINOGEN ALPHA-1 CHAIN
    Chains: A, D, G, J
    Fragment: FRAGMENT
    Organism Common: SEA LAMPREY
    Organism Scientific: PETROMYZON MARINUS
    Organism Taxid: 7757
 
Molecule 2 - FIBRINOGEN BETA CHAIN
    Chains: B, E, H, K
    Fragment: SEGMENT 2 OF 2
    Organism Common: SEA LAMPREY
    Organism Scientific: PETROMYZON MARINUS
    Organism Taxid: 7757
 
Molecule 3 - FIBRINOGEN GAMMA CHAIN
    Chains: C, F, I, L
    Organism Common: SEA LAMPREY
    Organism Scientific: PETROMYZON MARINUS
    Organism Taxid: 7757
 
Molecule 4 - LIGAND GLY-HIS-ARG-PRO-NH2
    Chains: M, N, O, P
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): ABC      JKLM  P
Biological Unit 2 (1x):    DEFGHI    NO 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 43)

Asymmetric Unit (7, 43)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2CA8Ligand/IonCALCIUM ION
3GAL1Ligand/IonBETA-D-GALACTOSE
4MAN9Ligand/IonALPHA-D-MANNOSE
5NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NDG8Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7NH24Mod. Amino AcidAMINO GROUP
Biological Unit 1 (4, 14)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3GAL-1Ligand/IonBETA-D-GALACTOSE
4MAN5Ligand/IonALPHA-D-MANNOSE
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NDG3Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7NH22Mod. Amino AcidAMINO GROUP
Biological Unit 2 (6, 21)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3GAL1Ligand/IonBETA-D-GALACTOSE
4MAN4Ligand/IonALPHA-D-MANNOSE
5NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NDG5Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7NH22Mod. Amino AcidAMINO GROUP

(-) Sites  (39, 39)

Asymmetric Unit (39, 39)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET B:381 , ASN B:384 , GLY E:339 , NDG M:571BINDING SITE FOR RESIDUE NDG B 570
02AC2SOFTWARENDG M:571BINDING SITE FOR RESIDUE MAN B 572
03AC3SOFTWAREMET E:381 , ASN E:384 , NDG N:571BINDING SITE FOR RESIDUE NAG E 570
04AC4SOFTWARENDG B:570 , MAN B:572BINDING SITE FOR RESIDUE NDG M 571
05AC5SOFTWARENAG E:570 , BMA E:572 , MAN N:576BINDING SITE FOR RESIDUE NDG N 571
06AC6SOFTWAREBMA E:573 , NDG N:571 , MAN N:576BINDING SITE FOR RESIDUE BMA E 572
07AC7SOFTWAREMET H:381 , ASN H:384 , HIS O:2 , PRO O:4 , NDG O:571BINDING SITE FOR RESIDUE NDG H 570
08AC8SOFTWAREHIS B:266 , NDG D:574 , BMA E:572BINDING SITE FOR RESIDUE BMA E 573
09AC9SOFTWAREMAN H:480 , NDG K:570BINDING SITE FOR RESIDUE NDG H 571
10BC1SOFTWAREHIS B:266 , GLY B:267 , BMA E:573BINDING SITE FOR RESIDUE NDG D 574
11BC2SOFTWARENDG H:571 , MAN H:573 , MAN P:576BINDING SITE FOR RESIDUE MAN H 480
12BC3SOFTWAREBMA E:572 , NDG N:571BINDING SITE FOR RESIDUE MAN N 576
13BC4SOFTWARENDG H:571 , ASN K:384 , HIS P:2BINDING SITE FOR RESIDUE NDG K 570
14BC5SOFTWARENDG H:570 , BMA H:572BINDING SITE FOR RESIDUE NDG O 571
15BC6SOFTWARENDG O:571BINDING SITE FOR RESIDUE BMA H 572
16BC7SOFTWAREHIS H:266 , MAN H:480 , NAG H:574BINDING SITE FOR RESIDUE MAN H 573
17BC8SOFTWAREASN C:203 , THR C:205 , NAG C:571BINDING SITE FOR RESIDUE NAG C 570
18BC9SOFTWAREHIS H:266 , GLY H:267 , MAN H:573 , GAL H:575BINDING SITE FOR RESIDUE NAG H 574
19CC1SOFTWARENAG C:570 , MAN C:572BINDING SITE FOR RESIDUE NAG C 571
20CC2SOFTWARENAG H:574BINDING SITE FOR RESIDUE GAL H 575
21CC3SOFTWARENAG C:571BINDING SITE FOR RESIDUE MAN C 572
22CC4SOFTWAREMAN H:480BINDING SITE FOR RESIDUE MAN P 576
23CC5SOFTWAREASN F:203 , NAG F:571BINDING SITE FOR RESIDUE NAG F 570
24CC6SOFTWARENAG F:570 , MAN F:572BINDING SITE FOR RESIDUE NAG F 571
25CC7SOFTWARENAG F:571BINDING SITE FOR RESIDUE MAN F 572
26CC8SOFTWAREASN I:203 , THR I:205 , NAG I:571BINDING SITE FOR RESIDUE NAG I 570
27CC9SOFTWARENAG I:570 , MAN J:572BINDING SITE FOR RESIDUE NAG I 571
28DC1SOFTWAREASN L:203 , NAG L:571BINDING SITE FOR RESIDUE NAG L 570
29DC2SOFTWARENAG L:570 , MAN L:572BINDING SITE FOR RESIDUE NAG L 571
30DC3SOFTWARENAG L:571BINDING SITE FOR RESIDUE MAN L 572
31DC4SOFTWARENAG I:571BINDING SITE FOR RESIDUE MAN J 572
32DC5SOFTWAREASP B:401 , ASP B:403 , TRP B:405 , LYS B:412BINDING SITE FOR RESIDUE CA B 1
33DC6SOFTWAREASP E:401 , ASP E:403 , TRP E:405 , LYS E:412BINDING SITE FOR RESIDUE CA E 2
34DC7SOFTWAREASP H:401 , ASP H:403 , TRP H:405 , LYS H:412BINDING SITE FOR RESIDUE CA H 3
35DC8SOFTWAREASP K:401 , ASP K:403 , TRP K:405 , LYS K:412BINDING SITE FOR RESIDUE CA K 4
36DC9SOFTWAREASP C:316 , ASP C:318 , TYR C:320 , GLY C:322BINDING SITE FOR RESIDUE CA C 5
37EC1SOFTWAREASP F:316 , ASP F:318 , TYR F:320 , GLY F:322BINDING SITE FOR RESIDUE CA F 6
38EC2SOFTWAREASP I:316 , ASP I:318 , TYR I:320 , GLY I:322BINDING SITE FOR RESIDUE CA I 7
39EC3SOFTWAREASP L:316 , ASP L:318 , TYR L:320 , GLY L:322BINDING SITE FOR RESIDUE CA L 8

(-) SS Bonds  (32, 32)

Asymmetric Unit
No.Residues
1A:154 -C:134
2A:158 -B:214
3B:218 -C:138
4B:222 -B:306
5B:232 -B:261
6B:414 -B:427
7C:154 -C:183
8C:324 -C:337
9D:154 -F:134
10D:158 -E:214
11E:218 -F:138
12E:222 -E:306
13E:232 -E:261
14E:414 -E:427
15F:154 -F:183
16F:324 -F:337
17G:154 -I:134
18G:158 -H:214
19H:218 -I:138
20H:222 -H:306
21H:232 -H:261
22H:414 -H:427
23I:154 -I:183
24I:324 -I:337
25J:154 -L:134
26J:158 -K:214
27K:218 -L:138
28K:222 -K:306
29K:232 -K:261
30K:414 -K:427
31L:154 -L:183
32L:324 -L:337

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LWU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LWU)

(-) PROSITE Motifs  (2, 16)

Asymmetric Unit (2, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FIBRINOGEN_C_2PS51406 Fibrinogen C-terminal domain profile.FIBG_PETMA169-412
 
 
 		  4C:145-388
F:145-388
I:145-388
L:145-388
FIBB_PETMA221-476
 
 
 		  4B:223-477
E:223-477
H:223-477
K:223-477
2FIBRINOGEN_C_1PS00514 Fibrinogen C-terminal domain signature.FIBG_PETMA356-368
 
 
 		  4C:332-344
F:332-344
I:332-344
L:332-344
FIBB_PETMA420-432
 
 
 		  4B:422-434
E:422-434
H:422-434
K:422-434
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FIBRINOGEN_C_2PS51406 Fibrinogen C-terminal domain profile.FIBG_PETMA169-412
 
 
 		  2C:145-388
-
-
L:145-388
FIBB_PETMA221-476
 
 
 		  2B:223-477
-
-
K:223-477
2FIBRINOGEN_C_1PS00514 Fibrinogen C-terminal domain signature.FIBG_PETMA356-368
 
 
 		  2C:332-344
-
-
L:332-344
FIBB_PETMA420-432
 
 
 		  2B:422-434
-
-
K:422-434
Biological Unit 2 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FIBRINOGEN_C_2PS51406 Fibrinogen C-terminal domain profile.FIBG_PETMA169-412
 
 
 		  2-
F:145-388
I:145-388
-
FIBB_PETMA221-476
 
 
 		  2-
E:223-477
H:223-477
-
2FIBRINOGEN_C_1PS00514 Fibrinogen C-terminal domain signature.FIBG_PETMA356-368
 
 
 		  2-
F:332-344
I:332-344
-
FIBB_PETMA420-432
 
 
 		  2-
E:422-434
H:422-434
-

(-) Exons   (0, 0)

(no "Exon" information available for 1LWU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
 aligned with FIBA1_PETMA | P02674 from UniProtKB/Swiss-Prot  Length:966

    Alignment length:99
                                   109       119       129       139       149       159       169       179       189         
          FIBA1_PETMA   100 NELEVRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRTCKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 198
               SCOP domains d1lwua_ A: Fibrinogen alpha chain                                                                   SCOP domains
               CATH domains 1lwuA00 A:95-193  [code=1.20.5.50, no name defined]                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lwu A  95 NELEVRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRACKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 193
                                   104       114       124       134       144       154       164       174       184         


Chain B from PDB  Type:PROTEIN  Length:315
 aligned with FIBB_PETMA | P02678 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:315
                                   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
           FIBB_PETMA   161 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 475
               SCOP domains d1lwub2 B:163-218 Fibrinogen beta chain                 d1lwub1 B:219-477 Fibrinogen C-terminal domains                                                                                                                                                                                                                     SCOP domains
               CATH domains 1lwuB03 B:163-222  [code=1.20.5.50, no name defined]        1lwuB01 B:223-369,B:469-477 Gamma Fibrinogen, chain A, domain 1                                                                                    1lwuB02 B:370-468 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                            1lwuB01   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhh.........................hhhhh.................hhhhhhh...............ee.....hhhhhhhhhhhh..........................hhhhh.............hhhhhh.....hhhhhh....................................................................eehhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------FIBRINOGEN_C_2  PDB: B:223-477 UniProt: 221-476                                                                                                                                                                                                                 PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------- PROSITE (1)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lwu B 163 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 477
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472     


Chain C from PDB  Type:PROTEIN  Length:317
 aligned with FIBG_PETMA | P04115 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:317
                                   116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       
           FIBG_PETMA   107 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRSCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHGGQQQ 423
               SCOP domains d1lwuc2 C:83-137 Fibrinogen gamma chain                d1lwuc1 C:138-399 Fibrinogen C-terminal domains                                                                                                                                                                                                                        SCOP domains
               CATH domains 1lwuC03 C:83-144  [code=1.20.5.50, no name defined]           1lwuC01 C:145-284,C:379-389 Gamma Fibrinogen, chain A, domain 1                                                                             1lwuC02 C:285-378 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                       1lwuC01    ---------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhh.......hhhhhhh......eeeee........eeeeeee....eeeeeeee.........hhhhhhhheeee.......ee.hhhhhhhhhh...eeeeeeee.....eeeeeeeeeee.hhhhh..ee...eee................hhhhhh...................hhhhhhh....................................ee.hhh.......eeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------FIBRINOGEN_C_2  PDB: C:145-388 UniProt: 169-412                                                                                                                                                                                                     ----------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------------------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lwu C  83 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHGGQQQ 399
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       


Chain D from PDB  Type:PROTEIN  Length:99
 aligned with FIBA1_PETMA | P02674 from UniProtKB/Swiss-Prot  Length:966

    Alignment length:99
                                   109       119       129       139       149       159       169       179       189         
          FIBA1_PETMA   100 NELEVRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRTCKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 198
               SCOP domains d1lwud_ D: Fibrinogen alpha chain                                                                   SCOP domains
               CATH domains 1lwuD00 D:95-193  [code=1.20.5.50, no name defined]                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh......hhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lwu D  95 NELEVRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRACKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 193
                                   104       114       124       134       144       154       164       174       184         


Chain E from PDB  Type:PROTEIN  Length:315
 aligned with FIBB_PETMA | P02678 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:315
                                   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
           FIBB_PETMA   161 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 475
               SCOP domains d1lwue2 E:163-218 Fibrinogen beta chain                 d1lwue1 E:219-477 Fibrinogen C-terminal domains                                                                                                                                                                                                                     SCOP domains
               CATH domains 1lwuE03 E:163-222  [code=1.20.5.50, no name defined]        1lwuE01 E:223-369,E:469-477 Gamma Fibrinogen, chain A, domain 1                                                                                    1lwuE02 E:370-468 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                            1lwuE01   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhh..................eeeeee.hhhhh.eeeeeee.........hhhhhhheee............ee..eeehhhhhhhhhhhh.eeeeeeee.....eeeeeeeeeee.hhhhh..eeee.......hhhhhh....hhhhhhh....................................................................eehhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------FIBRINOGEN_C_2  PDB: E:223-477 UniProt: 221-476                                                                                                                                                                                                                 PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------- PROSITE (1)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lwu E 163 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 477
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472     


Chain F from PDB  Type:PROTEIN  Length:317
 aligned with FIBG_PETMA | P04115 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:317
                                   116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       
           FIBG_PETMA   107 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRSCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHGGQQQ 423
               SCOP domains d1lwuf2 F:83-137 Fibrinogen gamma chain                d1lwuf1 F:138-399 Fibrinogen C-terminal domains                                                                                                                                                                                                                        SCOP domains
               CATH domains 1lwuF03 F:83-144  [code=1.20.5.50, no name defined]           1lwuF01 F:145-284,F:379-389 Gamma Fibrinogen, chain A, domain 1                                                                             1lwuF02 F:285-378 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                       1lwuF01    ---------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhh.......hhhhhhh......eeeee........eeeeeee....eeeeeeee.........hhhhhhhheeee.......ee.hhhhhhhhhh...eeeeeeee.....eeeeeeeeeee.hhhhh..ee...eee................hhhhhh...................hhhhhhh....................................ee.hhh.......eeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------FIBRINOGEN_C_2  PDB: F:145-388 UniProt: 169-412                                                                                                                                                                                                     ----------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------------------- PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lwu F  83 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHGGQQQ 399
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       


Chain G from PDB  Type:PROTEIN  Length:99
 aligned with FIBA1_PETMA | P02674 from UniProtKB/Swiss-Prot  Length:966

    Alignment length:99
                                   109       119       129       139       149       159       169       179       189         
          FIBA1_PETMA   100 NELEVRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRTCKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 198
               SCOP domains d1lwug_ G: Fibrinogen alpha chain                                                                   SCOP domains
               CATH domains 1lwuG00 G:95-193  [code=1.20.5.50, no name defined]                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lwu G  95 NELEVRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRACKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 193
                                   104       114       124       134       144       154       164       174       184         


Chain H from PDB  Type:PROTEIN  Length:315
 aligned with FIBB_PETMA | P02678 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:315
                                   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
           FIBB_PETMA   161 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 475
               SCOP domains d1lwuh2 H:163-218 Fibrinogen beta chain                 d1lwuh1 H:219-477 Fibrinogen C-terminal domains                                                                                                                                                                                                                     SCOP domains
               CATH domains 1lwuH03 H:163-222  [code=1.20.5.50, no name defined]        1lwuH01 H:223-369,H:469-477 Gamma Fibrinogen, chain A, domain 1                                                                                    1lwuH02 H:370-468 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                            1lwuH01   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhh..................eeeeee.hhhhh.eeeeeee.........hhhhhhheee............ee..eeehhhhhhhhhhhh.eeeeeeee.....eeeeeeeeeee.hhhhh..eeee.......hhhhhh....hhhhhhh....................................................................eehhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------FIBRINOGEN_C_2  PDB: H:223-477 UniProt: 221-476                                                                                                                                                                                                                 PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------- PROSITE (1)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lwu H 163 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 477
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472     


Chain I from PDB  Type:PROTEIN  Length:313
 aligned with FIBG_PETMA | P04115 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:313
                                   116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416   
           FIBG_PETMA   107 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRSCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHG 419
               SCOP domains d1lwui2 I:83-137 Fibrinogen gamma chain                d1lwui1 I:138-395 Fibrinogen C-terminal domains                                                                                                                                                                                                                    SCOP domains
               CATH domains 1lwuI03 I:83-144  [code=1.20.5.50, no name defined]           1lwuI01 I:145-284,I:379-389 Gamma Fibrinogen, chain A, domain 1                                                                             1lwuI02 I:285-378 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                       1lwuI01    ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhh.......hhhhhhh......eeeee........eeeeeee....eeeeeeee.........hhhhhhhheeee.......ee.hhhhhhhhhh...eeeeeeee.....eeeeeeeeeee.hhhhh..ee...eee................hhhhhh...................hhhhhhh....................................ee.hhh.......eeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------FIBRINOGEN_C_2  PDB: I:145-388 UniProt: 169-412                                                                                                                                                                                                     ------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_--------------------------------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lwu I  83 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHG 395
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392   


Chain J from PDB  Type:PROTEIN  Length:99
 aligned with FIBA1_PETMA | P02674 from UniProtKB/Swiss-Prot  Length:966

    Alignment length:99
                                   109       119       129       139       149       159       169       179       189         
          FIBA1_PETMA   100 NELEVRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRTCKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 198
               SCOP domains d1lwuj_ J: Fibrinogen alpha chain                                                                   SCOP domains
               CATH domains 1lwuJ00 J:95-193  [code=1.20.5.50, no name defined]                                                 CATH domains
           Pfam domains (1) Fib_alpha-1lwuJ01 J:95-167                                               -------------------------- Pfam domains (1)
           Pfam domains (2) Fib_alpha-1lwuJ02 J:95-167                                               -------------------------- Pfam domains (2)
           Pfam domains (3) Fib_alpha-1lwuJ03 J:95-167                                               -------------------------- Pfam domains (3)
           Pfam domains (4) Fib_alpha-1lwuJ04 J:95-167                                               -------------------------- Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 1lwu J  95 NELEVRYSEVLRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDIDVALRACKGSCARYLEYRLDKEKNLQLEKAASYIANLKFERFEEVV 193
                                   104       114       124       134       144       154       164       174       184         


Chain K from PDB  Type:PROTEIN  Length:315
 aligned with FIBB_PETMA | P02678 from UniProtKB/Swiss-Prot  Length:477

    Alignment length:315
                                   170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     
           FIBB_PETMA   161 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 475
               SCOP domains d1lwuk2 K:163-218 Fibrinogen beta chain                 d1lwuk1 K:219-477 Fibrinogen C-terminal domains                                                                                                                                                                                                                     SCOP domains
               CATH domains 1lwuK03 K:163-222  [code=1.20.5.50, no name defined]        1lwuK01 K:223-369,K:469-477 Gamma Fibrinogen, chain A, domain 1                                                                                    1lwuK02 K:370-468 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                            1lwuK01   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhh..................eeeeee.hhhhh.eeeeeee.........hhhhhhheee............ee..eeehhhhhhhhhhhh.eeeeeeee.....eeeeeeeeeee.hhhhh..eeee.......hhhhhh....hhhhhhh....................................................................eehhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------FIBRINOGEN_C_2  PDB: K:223-477 UniProt: 221-476                                                                                                                                                                                                                 PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_------------------------------------------- PROSITE (1)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lwu K 163 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNWKGSWYSMRQMAMKLRPK 477
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472     


Chain L from PDB  Type:PROTEIN  Length:313
 aligned with FIBG_PETMA | P04115 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:313
                                   116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416   
           FIBG_PETMA   107 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRSCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHG 419
               SCOP domains d1lwul2 L:83-137 Fibrinogen gamma chain                d1lwul1 L:138-395 Fibrinogen C-terminal domains                                                                                                                                                                                                                    SCOP domains
               CATH domains 1lwuL03 L:83-144  [code=1.20.5.50, no name defined]           1lwuL01 L:145-284,L:379-389 Gamma Fibrinogen, chain A, domain 1                                                                             1lwuL02 L:285-378 Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2                       1lwuL01    ------ CATH domains
           Pfam domains (1) Fib_alpha-1lwuL05 L:83-148                                        -Fibrinogen_C-1lwuL01 L:150-387                                                                                                                                                                                                                -------- Pfam domains (1)
           Pfam domains (2) Fib_alpha-1lwuL06 L:83-148                                        -Fibrinogen_C-1lwuL02 L:150-387                                                                                                                                                                                                                -------- Pfam domains (2)
           Pfam domains (3) Fib_alpha-1lwuL07 L:83-148                                        -Fibrinogen_C-1lwuL03 L:150-387                                                                                                                                                                                                                -------- Pfam domains (3)
           Pfam domains (4) Fib_alpha-1lwuL08 L:83-148                                        -Fibrinogen_C-1lwuL04 L:150-387                                                                                                                                                                                                                -------- Pfam domains (4)
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhh.......hhhhhhh......eeeee........eeeeeee....eeeeeeee.........hhhhhhhheeee.......ee.hhhhhhhhhh...eeeeeeee.....eeeeeeeeeee.hhhhh..ee...eee................hhhhhh...................hhhhhhh....................................ee.hhh.......eeeeeeee...hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------------------------------------------------FIBRINOGEN_C_2  PDB: L:145-388 UniProt: 169-412                                                                                                                                                                                                     ------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FIBRINOGEN_C_--------------------------------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1lwu L  83 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTTANKISPITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWHDRWYSLKMTTMKLLPMGRDLSGHG 395
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392   


Chain M from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 1lwu M   1 GHRPx   6
                               ||
                               4|
                                6-NH2


Chain N from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 1lwu N   1 GHRPx   6
                               ||
                               4|
                                6-NH2


Chain O from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 1lwu O   1 GHRPx   6
                               ||
                               4|
                                6-NH2


Chain P from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 1lwu P   1 GHRPx   6
                               ||
                               4|
                                6-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (5, 20)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Coiled coil proteins (689)

(-) CATH Domains  (3, 28)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: Alpha-Beta Complex (3881)
(-)
Topology: Gamma Fibrinogen; Chain A, domain 1 (58)
(-)
Homologous Superfamily: Gamma Fibrinogen, chain A, domain 1 (58)
(-)
Sea lamprey (Petromyzon marinus) (2)
1a1lwuC01C:145-284,C:379-389
1b1lwuF01F:145-284,F:379-389
1c1lwuI01I:145-284,I:379-389
1d1lwuL01L:145-284,L:379-389
1e1lwuB01B:223-369,B:469-477
1f1lwuE01E:223-369,E:469-477
1g1lwuH01H:223-369,H:469-477
1h1lwuK01K:223-369,K:469-477
(-)
Class: Few Secondary Structures (1120)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: Fibrinogen_C (23)
(-)
Clan: no clan defined [family: Fib_alpha] (17)

(-) Gene Ontology  (10, 28)

Asymmetric Unit(hide GO term definitions)
Chain A,D,G,J   (FIBA1_PETMA | P02674)
molecular function
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005577    fibrinogen complex    A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds.

Chain B,E,H,K   (FIBB_PETMA | P02678)
molecular function
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005577    fibrinogen complex    A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds.

Chain C,F,I,L   (FIBG_PETMA | P04115)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005577    fibrinogen complex    A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked together by disulfide bonds.

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  FIBA1_PETMA | P02674
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  FIBB_PETMA | P02678
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  FIBG_PETMA | P04115
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FIBA1_PETMA | P02674: 1n73
        FIBB_PETMA | P02678: 1n73
        FIBG_PETMA | P04115: 1n73

(-) Related Entries Specified in the PDB File

1fzg HUMAN FRAGMENT WITH GHRP