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(-) Description

Title :  NON-SPECIFIC LIPID TRANSFER PROTEIN 1 FROM BARLEY IN COMPLEX WITH L-ALFA-LYSOPHOSPHATIDYLCHOLINE, LAUDOYL
 
Authors :  A. Henriksen
Date :  23 Aug 02  (Deposition) - 06 Apr 04  (Release) - 01 Apr 08  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym./Biol. Unit :  A
Keywords :  Lipid Transfer, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Henriksen
Binding Of L-Alfa-Lysophosphatidylcholine, Lauroyl In The Hydrophobic Channel Of Barley Lipid Transfer Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NONSPECIFIC LIPID-TRANSFER PROTEIN 1
    Chains: A
    Organism Scientific: HORDEUM VULGARE
    Organism Taxid: 4513
    Strain: CV.ALEXIS
    Synonym: LIPID TRANSFER PROTEIN
    Tissue: SEEDS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1LAP3Ligand/Ion[2-((1-OXODODECANOXY-(2-HYDROXY-3-PROPANYL))-PHOSPHONATE-OXY)-ETHYL]-TRIMETHYLAMMONIUM

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:55 , VAL A:77 , SER A:82 , PRO A:83 , HOH A:110BINDING SITE FOR RESIDUE LAP A 92
2AC2SOFTWAREMET A:10 , ILE A:54BINDING SITE FOR RESIDUE LAP A 93
3AC3SOFTWAREARG A:44 , ALA A:66 , ASN A:76 , VAL A:77 , PRO A:78 , HOH A:110 , HOH A:123 , HOH A:149BINDING SITE FOR RESIDUE LAP A 94

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:3 -A:50
2A:13 -A:27
3A:28 -A:73
4A:48 -A:87

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:22 -Pro A:23

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MID)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PLANT_LTPPS00597 Plant lipid transfer proteins signature.NLTP1_HORVU95-116  1A:69-90

(-) Exons   (0, 0)

(no "Exon" information available for 1MID)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
 aligned with NLTP1_HORVU | P07597 from UniProtKB/Swiss-Prot  Length:117

    Alignment length:91
                                    36        46        56        66        76        86        96       106       116 
          NLTP1_HORVU    27 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY 117
               SCOP domains d1mida_ A: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)                      SCOP domains
               CATH domains 1midA00 A:1-91 Plant lipid-transfer and hydrophobic proteins                                CATH domains
               Pfam domains Tryp_alpha_amyl-1midA01 A:1-87                                                         ---- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh............hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------PLANT_LTP  PDB: A:69-9- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 1mid A   1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY  91
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Prolamin (17)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (NLTP1_HORVU | P07597)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
biological process
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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  NLTP1_HORVU | P07597
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NLTP1_HORVU | P07597: 1be2 1jtb 1lip 3gsh

(-) Related Entries Specified in the PDB File

1be2 1BE2 CONTAINS BARLEY LIPID TRANSFER PROTEIN COMPLEXED WITH PALMITATE, NMR, 10 STRUCTURES
1jtb 1JTB CONTAINS BARLEY LIPID TRANSFER PROTEIN COMPLEXED WITH PALMITOYL COENZYME A, NMR, 16 STRUCTURES
1lip 1LIP CONTAINS BARLEY LIPID TRANSFER PROTEIN (NMR, 4 STRUCTURES)