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(-) Description

Title :  LIPID TRANSFER PROTEIN COMPLEXED WITH PALMITATE, NMR, 10 STRUCTURES
 
Authors :  M. H. Lerche, F. M. Poulsen
Date :  19 May 98  (Deposition) - 02 Dec 98  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Lipid Transport, Lipid Transfer Protein, Palmitate, Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. H. Lerche, F. M. Poulsen
Solution Structure Of Barley Lipid Transfer Protein Complexed With Palmitate. Two Different Binding Modes Of Palmitate In The Homologous Maize And Barley Nonspecific Lipid Transfer Proteins.
Protein Sci. V. 7 2490 1998
PubMed-ID: 9865943
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LIPID TRANSFER PROTEIN
    Chains: A
    Organ: SEEDS
    Organism Scientific: HORDEUM VULGARE
    Organism Taxid: 4513
    Synonym: LTP

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1PLM1Ligand/IonPALMITIC ACID

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:9 , MET A:10 , CYS A:13 , LEU A:14 , TYR A:16 , VAL A:17 , VAL A:31 , ARG A:44 , VAL A:47 , CYS A:48 , LEU A:51 , ILE A:69 , TYR A:79 , ILE A:81BINDING SITE FOR RESIDUE PLM A 92
2PLBUNKNOWNLYS A:9 , MET A:10 , CYS A:13 , LEU A:14 , CYS A:27 , LEU A:34 , HIS A:35 , ARG A:44 , GLN A:45 , VAL A:47 , CYS A:48 , LEU A:51 , ILE A:69 , TYR A:79 , ILE A:81 , ILE A:85BINDING SITE OF PALMITATE.

(-) SS Bonds  (4, 4)

NMR Structure
No.Residues
1A:3 -A:50
2A:13 -A:27
3A:28 -A:73
4A:48 -A:87

(-) Cis Peptide Bonds  (1, 10)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10Gly A:22 -Pro A:23

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BE2)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PLANT_LTPPS00597 Plant lipid transfer proteins signature.NLTP1_HORVU95-116  1A:69-90

(-) Exons   (0, 0)

(no "Exon" information available for 1BE2)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
 aligned with NLTP1_HORVU | P07597 from UniProtKB/Swiss-Prot  Length:117

    Alignment length:91
                                    36        46        56        66        76        86        96       106       116 
          NLTP1_HORVU    27 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY 117
               SCOP domains d1be2a_ A: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)                      SCOP domains
               CATH domains 1be2A00 A:1-91 Plant lipid-transfer and hydrophobic proteins                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------PLANT_LTP  PDB: A:69-9- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 1be2 A   1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRIY  91
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BE2)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (NLTP1_HORVU | P07597)
molecular function
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
biological process
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NLTP1_HORVU | P07597: 1jtb 1lip 1mid 3gsh

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