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(-) Description

Title :  DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN
 
Authors :  J. Luo, D. Liu, M. A. White, R. O. Fox
Date :  20 Mar 02  (Deposition) - 24 Jun 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Dodecamer, Metal Bound Complex, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Luo, D. Liu, M. A. White, R. O. Fox
Dna Protection And Binding By E. Coli Dps Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA PROTECTION DURING STARVATION PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric/Biological Unit (2, 24)
No.NameCountTypeFull Name
1K12Ligand/IonPOTASSIUM ION
2TRS12Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU E:82BINDING SITE FOR RESIDUE K E 251
02AC2SOFTWAREHOH L:589BINDING SITE FOR RESIDUE K L 255
03AC3SOFTWAREHOH L:603BINDING SITE FOR RESIDUE K K 257
04AC4SOFTWAREARG G:153BINDING SITE FOR RESIDUE K G 259
05AC5SOFTWAREASP G:146BINDING SITE FOR RESIDUE K G 260
06AC6SOFTWAREASP C:146 , ASP F:146BINDING SITE FOR RESIDUE K C 262
07AC7SOFTWAREASP A:146 , ASP E:146 , ASP I:146BINDING SITE FOR RESIDUE TRS A 301
08AC8SOFTWAREGLU C:64 , GLU G:64 , GLU K:64BINDING SITE FOR RESIDUE TRS K 302
09AC9SOFTWAREGLU C:167 , GLU G:167 , GLU K:167BINDING SITE FOR RESIDUE TRS G 303
10BC1SOFTWAREASP B:146 , ASP H:146 , ASP K:146BINDING SITE FOR RESIDUE TRS B 304
11BC2SOFTWAREGLU D:64 , GLU F:64 , GLU I:64BINDING SITE FOR RESIDUE TRS D 305
12BC3SOFTWAREGLU D:167 , GLU F:167 , GLU I:167BINDING SITE FOR RESIDUE TRS D 306
13BC4SOFTWAREASP C:146 , ASP F:146 , ASP L:146BINDING SITE FOR RESIDUE TRS C 307
14BC5SOFTWAREGLU A:64 , GLU H:64 , GLU J:64BINDING SITE FOR RESIDUE TRS J 308
15BC6SOFTWAREGLU A:167 , GLU H:167 , GLU J:167BINDING SITE FOR RESIDUE TRS A 309
16BC7SOFTWAREASP D:146 , ASP G:146 , ASP J:146BINDING SITE FOR RESIDUE TRS D 310
17BC8SOFTWAREGLU B:64 , GLU E:64 , GLU L:64BINDING SITE FOR RESIDUE TRS E 311
18BC9SOFTWAREGLU B:167 , GLU E:167 , GLU L:167BINDING SITE FOR RESIDUE TRS B 312

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1L8H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1L8H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1L8H)

(-) PROSITE Motifs  (2, 24)

Asymmetric/Biological Unit (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.DPS_ECOLI51-67
 
 
 
 
 
 
 
 
 
 
 		  12A:51-67
B:51-67
C:51-67
D:51-67
E:51-67
F:51-67
G:51-67
H:51-67
I:51-67
J:51-67
K:51-67
L:51-67
2DPS_2PS00819 Dps protein family signature 2.DPS_ECOLI77-91
 
 
 
 
 
 
 
 
 
 
 		  12A:77-91
B:77-91
C:77-91
D:77-91
E:77-91
F:77-91
G:77-91
H:77-91
I:77-91
J:77-91
K:77-91
L:77-91

(-) Exons   (0, 0)

(no "Exon" information available for 1L8H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8ha_ A: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1l8hA00 A:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1l8h A  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      


Chain B from PDB  Type:PROTEIN  Length:154
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:154
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163    
            DPS_ECOLI    14 LLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hb_ B: Dodecameric ferritin homolog                                                                                                                    SCOP domains
               CATH domains 1l8hB00 B:14-167  [code=1.20.1260.10, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1l8h B  14 LLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163    


Chain C from PDB  Type:PROTEIN  Length:158
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:158
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159        
            DPS_ECOLI    10 KATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hc_ C: Dodecameric ferritin homolog                                                                                                                        SCOP domains
               CATH domains 1l8hC00 C:10-167  [code=1.20.1260.10, no name defined]                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1l8h C  10 KATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159        


Chain D from PDB  Type:PROTEIN  Length:155
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:155
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     
            DPS_ECOLI    13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hd_ D: Dodecameric ferritin homolog                                                                                                                     SCOP domains
               CATH domains 1l8hD00 D:13-167  [code=1.20.1260.10, no name defined]                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1l8h D  13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     


Chain E from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8he_ E: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1l8hE00 E:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1l8h E  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      


Chain F from PDB  Type:PROTEIN  Length:154
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:154
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163    
            DPS_ECOLI    14 LLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hf_ F: Dodecameric ferritin homolog                                                                                                                    SCOP domains
               CATH domains 1l8hF00 F:14-167  [code=1.20.1260.10, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1l8h F  14 LLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163    


Chain G from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hg_ G: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1l8hG00 G:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1l8h G  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      


Chain H from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hh_ H: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1l8hH00 H:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1l8h H  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      


Chain I from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hi_ I: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1l8hI00 I:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1l8h I  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      


Chain J from PDB  Type:PROTEIN  Length:156
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:156
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      
            DPS_ECOLI    12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hj_ J: Dodecameric ferritin homolog                                                                                                                      SCOP domains
               CATH domains 1l8hJ00 J:12-167  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1l8h J  12 TNLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161      


Chain K from PDB  Type:PROTEIN  Length:155
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:155
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     
            DPS_ECOLI    13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hk_ K: Dodecameric ferritin homolog                                                                                                                     SCOP domains
               CATH domains 1l8hK00 K:13-167  [code=1.20.1260.10, no name defined]                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1l8h K  13 NLLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     


Chain L from PDB  Type:PROTEIN  Length:154
 aligned with DPS_ECOLI | P0ABT2 from UniProtKB/Swiss-Prot  Length:167

    Alignment length:154
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163    
            DPS_ECOLI    14 LLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
               SCOP domains d1l8hl_ L: Dodecameric ferritin homolog                                                                                                                    SCOP domains
               CATH domains 1l8hL00 L:14-167  [code=1.20.1260.10, no name defined]                                                                                                     CATH domains
           Pfam domains (1) ----------------Ferritin-1l8hL01 L:30-167                                                                                                                  Pfam domains (1)
           Pfam domains (2) ----------------Ferritin-1l8hL02 L:30-167                                                                                                                  Pfam domains (2)
           Pfam domains (3) ----------------Ferritin-1l8hL03 L:30-167                                                                                                                  Pfam domains (3)
           Pfam domains (4) ----------------Ferritin-1l8hL04 L:30-167                                                                                                                  Pfam domains (4)
           Pfam domains (5) ----------------Ferritin-1l8hL05 L:30-167                                                                                                                  Pfam domains (5)
           Pfam domains (6) ----------------Ferritin-1l8hL06 L:30-167                                                                                                                  Pfam domains (6)
           Pfam domains (7) ----------------Ferritin-1l8hL07 L:30-167                                                                                                                  Pfam domains (7)
           Pfam domains (8) ----------------Ferritin-1l8hL08 L:30-167                                                                                                                  Pfam domains (8)
           Pfam domains (9) ----------------Ferritin-1l8hL09 L:30-167                                                                                                                  Pfam domains (9)
          Pfam domains (10) ----------------Ferritin-1l8hL10 L:30-167                                                                                                                  Pfam domains (10)
          Pfam domains (11) ----------------Ferritin-1l8hL11 L:30-167                                                                                                                  Pfam domains (11)
          Pfam domains (12) ----------------Ferritin-1l8hL12 L:30-167                                                                                                                  Pfam domains (12)
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------DPS_1            ---------DPS_2          ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1l8h L  14 LLYTRNDVSDSEKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALICHLATMAERAVQLGGVALGTTQVINSKTPLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIESNIE 167
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Up-down Bundle (3216)
(-)
Topology: Ferritin; (180)
(-)
Homologous Superfamily: [code=1.20.1260.10, no name defined] (180)
(-)
Escherichia coli. Organism_taxid: 562. (4)
1a1l8hC00C:10-167
1b1l8hA00A:12-167
1c1l8hE00E:12-167
1d1l8hG00G:12-167
1e1l8hH00H:12-167
1f1l8hI00I:12-167
1g1l8hJ00J:12-167
1h1l8hD00D:13-167
1i1l8hK00K:13-167
1j1l8hB00B:14-167
1k1l8hF00F:14-167
1l1l8hL00L:14-167

(-) Pfam Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Clan: Ferritin (185)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (DPS_ECOLI | P0ABT2)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016722    oxidoreductase activity, oxidizing metal ions    Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0030261    chromosome condensation    The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0042594    response to starvation    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0009295    nucleoid    The region of a virus, bacterial cell, mitochondrion or chloroplast to which the nucleic acid is confined.

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  1l8h
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPS_ECOLI | P0ABT2: 1dps 1f30 1f33 1jre 1jts 1l8i 2w9r 3o2h

(-) Related Entries Specified in the PDB File

1dps 1DPS CONTAINS THE STRUCTURE OF APO DPS IN A DIFFERENT SPACE GROUP
1f30 1F30 CONTAINS THE WT PROTEIN WITH ZINC IN SPACE GROUP C2221
1f33 1F33 CONTAINS THE APO WT PROTEIN IN SPACE GROUP C2221
1jre 1JRE IS A DPS CD COMPLEX
1l8i 1L8I IS DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN