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(-) Description

Title :  SOLUTION STRUCTURE OF THE DOCKING AND DIMERIZATION DOMAIN OF PROTEIN KINASE A II-ALPHA (RIIALPHA D/D). ALTERNATIVELY CALLED THE N-TERMINAL DIMERIZATION DOMAIN OF THE REGULATORY SUBUNIT OF PROTEIN KINASE A.
 
Authors :  D. Morikis, M. Roy, M. G. Newlon, J. D. Scott, P. A. Jennings
Date :  08 Mar 02  (Deposition) - 03 Apr 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (24x)
Keywords :  Four-Helix Bundle, Helix-Loop-Helix, Regulatory Subunit, Dimerization, Docking, Anchoring, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Morikis, M. Roy, M. G. Newlon, J. D. Scott, P. A. Jennings
Electrostatic Properties Of The Structure Of The Docking And Dimerization Domain Of Protein Kinase A Iialpha
Eur. J. Biochem. V. 269 2040 2002
PubMed-ID: 11985580  |  Reference-DOI: 10.1046/J.1432-1033.2002.02852.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY CHAIN
    ChainsA, B
    EC Number2.7.1.37
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET-16B
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentN-TERMINAL DOCKING AND DIMERIZATION DOMAIN
    GeneRIIA(1-44)
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090

 Structural Features

(-) Chains, Units

  
NMR Structure (24x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1L6E)

(-) Sites  (0, 0)

(no "Site" information available for 1L6E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1L6E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1L6E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1L6E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1L6E)

(-) Exons   (0, 0)

(no "Exon" information available for 1L6E)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:46
 aligned with KAP2_MOUSE | P12367 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:46
                                                   23                     
                             1                   22 |                     
                             |       9        19  | |   28        38      
           KAP2_MOUSE     - -MSHIQIPPGLTELLQGYTVEVG-QQPPDLVDFAVEYFTRLREARR  44
               SCOP domains d1l6ea_ A:                                     SCOP domains
               CATH domains 1l6eA00 A:1-46                                 CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 1l6e A   1 HMGHIQIPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREARR  46
                                    10        20  |     30        40      
                                                23A                       

Chain B from PDB  Type:PROTEIN  Length:46
 aligned with KAP2_MOUSE | P12367 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:46
                                                   23                     
                             1                   22 |                     
                             |       9        19  | |   28        38      
           KAP2_MOUSE     - -MSHIQIPPGLTELLQGYTVEVG-QQPPDLVDFAVEYFTRLREARR  44
               SCOP domains d1l6eb_ B:                                     SCOP domains
               CATH domains 1l6eB00 B:1-46                                 CATH domains
           Pfam domains (1) --------RIIa-1l6eB01 B:9-45                  - Pfam domains (1)
           Pfam domains (2) --------RIIa-1l6eB02 B:9-45                  - Pfam domains (2)
         Sec.struct. author .........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 1l6e B   1 HMGHIQIPPGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLREARR  46
                                    10        20  |     30        40      
                                                23B                       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure

(-) CATH Domains  (1, 2)

NMR Structure

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: RIIa (3)

(-) Gene Ontology  (18, 18)

NMR Structure(hide GO term definitions)
Chain A,B   (KAP2_MOUSE | P12367)
molecular function
    GO:0030552    cAMP binding    Interacting selectively and non-covalently with cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate).
    GO:0004862    cAMP-dependent protein kinase inhibitor activity    Stops, prevents or reduces the activity of a cAMP-dependent protein kinase.
    GO:0008603    cAMP-dependent protein kinase regulator activity    Modulation of the activity of the enzyme cAMP-dependent protein kinase.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0034236    protein kinase A catalytic subunit binding    Interacting selectively and non-covalently with one or both of the catalytic subunits of protein kinase A.
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:2000480    negative regulation of cAMP-dependent protein kinase activity    Any process that stops, prevents or reduces the frequency, rate or extent of cAMP-dependent protein kinase activity.
    GO:0001932    regulation of protein phosphorylation    Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein.
cellular component
    GO:0005952    cAMP-dependent protein kinase complex    An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer.
    GO:0005813    centrosome    A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0031588    nucleotide-activated protein kinase complex    A protein complex that possesses nucleotide-dependent protein kinase activity. The nucleotide can be AMP (in S. pombe and human) or ADP (in S. cerevisiae).
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0044853    plasma membrane raft    A membrane raft that is part of the plasma membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAP2_MOUSE | P123671kmu 1kmw 1r2a 2izy 2qvs 3j4q 3j4r

(-) Related Entries Specified in the PDB File

1r2a 1R2A CONTAINS THE SAME PROTEIN.