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(-) Description

Title :  CRYSTAL STRUCTURE OF THE EPHB2-EPHRINB2 COMPLEX
 
Authors :  J. P. Himanen, K. R. Rajashankar, M. Lackmann, C. A. Cowan, M. Henkemeye D. B. Nikolov
Date :  28 Nov 01  (Deposition) - 28 May 02  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,D,E,H  (1x)
Biol. Unit 2:  B,C,F,G  (1x)
Keywords :  Developmental Protein, Transferase-Transferase Receptor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. P. Himanen, K. R. Rajashankar, M. Lackmann, C. A. Cowan, M. Henkemeyer, D. B. Nikolov
Crystal Structure Of An Eph Receptor-Ephrin Complex.
Nature V. 414 933 2001
PubMed-ID: 11780069  |  Reference-DOI: 10.1038/414933A

(-) Compounds

Molecule 1 - EPHRIN TYPE-B RECEPTOR 2
    ChainsA, B, C, D
    EC Number2.7.1.112
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentLIGAND-BINDING DOMAIN
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
 
Molecule 2 - EPHRIN-B2
    ChainsE, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentEXTRACELLULAR DOMAIN
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A  DE  H
Biological Unit 2 (1x) BC  FG 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1KGY)

(-) Sites  (0, 0)

(no "Site" information available for 1KGY)

(-) SS Bonds  (18, 18)

Asymmetric Unit
No.Residues
1A:70 -A:192
2A:105 -A:115
3A:205 -C:605
4B:270 -B:392
5B:305 -B:315
6B:405 -D:805
7C:470 -C:592
8C:505 -C:515
9D:670 -D:792
10D:705 -D:715
11E:1065 -E:1104
12E:1092 -E:1156
13F:1265 -F:1304
14F:1292 -F:1356
15G:1465 -G:1504
16G:1492 -G:1556
17H:1665 -H:1704
18H:1692 -H:1756

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1KGY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1KGY)

(-) PROSITE Motifs  (4, 16)

Asymmetric Unit (4, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EPH_LBDPS51550 Eph receptor ligand-binding domain profile.EPHB2_MOUSE20-202
 
 
 
  4A:28-207
B:228-407
C:428-607
D:628-807
2EPHRIN_RBD_2PS51551 Ephrin receptor-binding (ephrin RBD) domain profile.EFNB2_MOUSE31-167
 
 
 
  4E:1031-1167
F:1231-1367
G:1431-1567
H:1631-1767
3EPHRIN_RBD_1PS01299 Ephrin receptor-binding (ephrin RBD) domain signature.EFNB2_MOUSE112-139
 
 
 
  4E:1112-1139
F:1312-1339
G:1512-1539
H:1712-1739
4RECEPTOR_TYR_KIN_V_1PS00790 Receptor tyrosine kinase class V signature 1.EPHB2_MOUSE178-198
 
 
 
  4A:186-206
B:386-406
C:586-606
D:786-806
Biological Unit 1 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EPH_LBDPS51550 Eph receptor ligand-binding domain profile.EPHB2_MOUSE20-202
 
 
 
  2A:28-207
-
-
D:628-807
2EPHRIN_RBD_2PS51551 Ephrin receptor-binding (ephrin RBD) domain profile.EFNB2_MOUSE31-167
 
 
 
  2E:1031-1167
-
-
H:1631-1767
3EPHRIN_RBD_1PS01299 Ephrin receptor-binding (ephrin RBD) domain signature.EFNB2_MOUSE112-139
 
 
 
  2E:1112-1139
-
-
H:1712-1739
4RECEPTOR_TYR_KIN_V_1PS00790 Receptor tyrosine kinase class V signature 1.EPHB2_MOUSE178-198
 
 
 
  2A:186-206
-
-
D:786-806
Biological Unit 2 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EPH_LBDPS51550 Eph receptor ligand-binding domain profile.EPHB2_MOUSE20-202
 
 
 
  2-
B:228-407
C:428-607
-
2EPHRIN_RBD_2PS51551 Ephrin receptor-binding (ephrin RBD) domain profile.EFNB2_MOUSE31-167
 
 
 
  2-
F:1231-1367
G:1431-1567
-
3EPHRIN_RBD_1PS01299 Ephrin receptor-binding (ephrin RBD) domain signature.EFNB2_MOUSE112-139
 
 
 
  2-
F:1312-1339
G:1512-1539
-
4RECEPTOR_TYR_KIN_V_1PS00790 Receptor tyrosine kinase class V signature 1.EPHB2_MOUSE178-198
 
 
 
  2-
B:386-406
C:586-606
-

(-) Exons   (0, 0)

(no "Exon" information available for 1KGY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:181
 aligned with EPHB2_MOUSE | P54763 from UniProtKB/Swiss-Prot  Length:986

    Alignment length:181
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198 
         EPHB2_MOUSE     19 VEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR  199
               SCOP domains d1kgya_ A: Ligand-binding domain of the ephb2 receptor tyrosine kinase                                                                                                                SCOP domains
               CATH domains 1kgyA00 A:27-207 Galactose-binding domain-like                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...........ee......eeeee.......eeeeeee........eeee...ee......eeeeeeeee...............eeeeeeeee.................eeeeeee............hhhhheeeeeee......eeeeeeee...eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -EPH_LBD  PDB: A:28-207 UniProt: 20-202                                                                                                                                               PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------RECEPTOR_TYR_KIN_V_1 - PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1kgy A   27 AEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR  207
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206 

Chain B from PDB  Type:PROTEIN  Length:181
 aligned with EPHB2_MOUSE | P54763 from UniProtKB/Swiss-Prot  Length:986

    Alignment length:181
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198 
         EPHB2_MOUSE     19 VEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR  199
               SCOP domains d1kgyb_ B: Ligand-binding domain of the ephb2 receptor tyrosine kinase                                                                                                                SCOP domains
               CATH domains 1kgyB00 B:227-407 Galactose-binding domain-like                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...........ee......eeeee.......eeeeeee........eeee...ee......eeeeeeeeee..............eeeeeeeee.................eeeeeee...ee.......hhhhheeeeeee......eeeeeeee...eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -EPH_LBD  PDB: B:228-407 UniProt: 20-202                                                                                                                                              PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------RECEPTOR_TYR_KIN_V_1 - PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1kgy B  227 AEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR  407
                                   236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406 

Chain C from PDB  Type:PROTEIN  Length:181
 aligned with EPHB2_MOUSE | P54763 from UniProtKB/Swiss-Prot  Length:986

    Alignment length:181
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198 
         EPHB2_MOUSE     19 VEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR  199
               SCOP domains d1kgyc_ C: Ligand-binding domain of the ephb2 receptor tyrosine kinase                                                                                                                SCOP domains
               CATH domains 1kgyC00 C:427-607 Galactose-binding domain-like                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...........ee......eeeeee.....eeeeeeehhhhh....eeee...ee......eeeeeeeee.hhhhh.........eeeeeeeee.................eeeeeee............hhhhheeeeeee......eeeeeeee....eeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -EPH_LBD  PDB: C:428-607 UniProt: 20-202                                                                                                                                              PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------RECEPTOR_TYR_KIN_V_1 - PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1kgy C  427 AEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR  607
                                   436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606 

Chain D from PDB  Type:PROTEIN  Length:181
 aligned with EPHB2_MOUSE | P54763 from UniProtKB/Swiss-Prot  Length:986

    Alignment length:181
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198 
         EPHB2_MOUSE     19 VEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR  199
               SCOP domains d1kgyd_ D: Ligand-binding domain of the ephb2 receptor tyrosine kinase                                                                                                                SCOP domains
               CATH domains 1kgyD00 D:627-807 Galactose-binding domain-like                                                                                                                                       CATH domains
           Pfam domains (1) ---------Ephrin_lbd-1kgyD01 D:636-807                                                                                                                                                 Pfam domains (1)
           Pfam domains (2) ---------Ephrin_lbd-1kgyD02 D:636-807                                                                                                                                                 Pfam domains (2)
           Pfam domains (3) ---------Ephrin_lbd-1kgyD03 D:636-807                                                                                                                                                 Pfam domains (3)
           Pfam domains (4) ---------Ephrin_lbd-1kgyD04 D:636-807                                                                                                                                                 Pfam domains (4)
         Sec.struct. author .eeeee...........ee......eeeeee.....eeeeeeee........eeee...ee......eeeeeeeeee..............eeeeeeeee.................eeeeeee...ee.......hhhhheeeeeee......eeeeeeee...eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -EPH_LBD  PDB: D:628-807 UniProt: 20-202                                                                                                                                              PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------RECEPTOR_TYR_KIN_V_1 - PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1kgy D  627 AEETLMDSTTATAELGWMVHPPSGWEEVSGYDENMNTIRTYQVCNVFESSQNNWLRTKFIRRRGAHRIHVEMKFSVRDCSSIPSVPGSCKETFNLYYYEADFDLATKTFPNWMENPWVKVDTIAADESFSQVDLGGRVMKINTEVRSFGPVSRNGFYLAFQDYGGCMSLIAVRVFYRKCPR  807
                                   636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806 

Chain E from PDB  Type:PROTEIN  Length:138
 aligned with EFNB2_MOUSE | P52800 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:138
                                    40        50        60        70        80        90       100       110       120       130       140       150       160        
         EFNB2_MOUSE     31 IVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG  168
               SCOP domains d1kgye_ E: Ephrin-b2 ectodomain                                                                                                            SCOP domains
               CATH domains 1kgyE00 E:1031-1168 Cupredoxins -  blue copper proteins                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee.............ee.......eeeeee.............eeeeeehhhhhhh.......eeeeee......eeeeee.................eeeeee......................eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) EPHRIN_RBD_2  PDB: E:1031-1167 UniProt: 31-167                                                                                           - PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------EPHRIN_RBD_1                ----------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1kgy E 1031 IVLEPIYWNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG 1168
                                  1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160        

Chain F from PDB  Type:PROTEIN  Length:138
 aligned with EFNB2_MOUSE | P52800 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:138
                                    40        50        60        70        80        90       100       110       120       130       140       150       160        
         EFNB2_MOUSE     31 IVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG  168
               SCOP domains d1kgyf_ F: Ephrin-b2 ectodomain                                                                                                            SCOP domains
               CATH domains 1kgyF00 F:1231-1368 Cupredoxins -  blue copper proteins                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee.............ee.......eeeeee.............eeeeeehhhhhhh.......eeeeee......eeeeee.................eeeeee....hhhhh.....hhhhhh..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) EPHRIN_RBD_2  PDB: F:1231-1367 UniProt: 31-167                                                                                           - PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------EPHRIN_RBD_1                ----------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1kgy F 1231 IVLEPIYWNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG 1368
                                  1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360        

Chain G from PDB  Type:PROTEIN  Length:138
 aligned with EFNB2_MOUSE | P52800 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:138
                                    40        50        60        70        80        90       100       110       120       130       140       150       160        
         EFNB2_MOUSE     31 IVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG  168
               SCOP domains d1kgyg_ G: Ephrin-b2 ectodomain                                                                                                            SCOP domains
               CATH domains 1kgyG00 G:1431-1568 Cupredoxins -  blue copper proteins                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......................................................hhhhhhh.....................................................hhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) EPHRIN_RBD_2  PDB: G:1431-1567 UniProt: 31-167                                                                                           - PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------EPHRIN_RBD_1                ----------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1kgy G 1431 IVLEPIYWNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG 1568
                                  1440      1450      1460      1470      1480      1490      1500      1510      1520      1530      1540      1550      1560        

Chain H from PDB  Type:PROTEIN  Length:138
 aligned with EFNB2_MOUSE | P52800 from UniProtKB/Swiss-Prot  Length:336

    Alignment length:138
                                    40        50        60        70        80        90       100       110       120       130       140       150       160        
         EFNB2_MOUSE     31 IVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG  168
               SCOP domains d1kgyh_ H: Ephrin-b2 ectodomain                                                                                                            SCOP domains
               CATH domains 1kgyH00 H:1631-1768 Cupredoxins -  blue copper proteins                                                                                    CATH domains
           Pfam domains (1) Ephrin-1kgyH01 H:1631-1768                                                                                                                 Pfam domains (1)
           Pfam domains (2) Ephrin-1kgyH02 H:1631-1768                                                                                                                 Pfam domains (2)
           Pfam domains (3) Ephrin-1kgyH03 H:1631-1768                                                                                                                 Pfam domains (3)
           Pfam domains (4) Ephrin-1kgyH04 H:1631-1768                                                                                                                 Pfam domains (4)
         Sec.struct. author ......................................................hhhhhhh.............................................................hhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) EPHRIN_RBD_2  PDB: H:1631-1767 UniProt: 31-167                                                                                           - PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------EPHRIN_RBD_1                ----------------------------- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1kgy H 1631 IVLEPIYWNSSNSKFLPGGGLVLYPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG 1768
                                  1640      1650      1660      1670      1680      1690      1700      1710      1720      1730      1740      1750      1760        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Family: Ephrin (10)
1aEphrin-1kgyH01H:1631-1768
1bEphrin-1kgyH02H:1631-1768
1cEphrin-1kgyH03H:1631-1768
1dEphrin-1kgyH04H:1631-1768
(-)
Clan: GBD (153)

(-) Gene Ontology  (68, 79)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (EPHB2_MOUSE | P54763)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0008046    axon guidance receptor activity    Combining with an extracellular messenger and transmitting the signal from one side of the membrane to the other to results in a change in cellular activity involved in axon guidance.
    GO:0005003    ephrin receptor activity    Combining with an ephrin to initiate a change in cell activity.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0004714    transmembrane receptor protein tyrosine kinase activity    Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate.
    GO:0005005    transmembrane-ephrin receptor activity    Combining with a transmembrane ephrin to initiate a change in cell activity.
biological process
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0009887    animal organ morphogenesis    Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0007413    axonal fasciculation    The collection of axons into a bundle of rods, known as a fascicle.
    GO:0048593    camera-type eye morphogenesis    The process in which the anatomical structures of the eye are generated and organized. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
    GO:0000902    cell morphogenesis    The developmental process in which the size or shape of a cell is generated and organized.
    GO:0021952    central nervous system projection neuron axonogenesis    Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region.
    GO:0071679    commissural neuron axon guidance    The process in which the migration of an axon growth cone of a commissural neuron is directed to its target in the brain in response to a combination of attractive and repulsive cues.
    GO:0022038    corpus callosum development    The process whose specific outcome is the progression of the corpus callosum over time, from its formation to the mature structure. The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provide communication between the right and left cerebral hemispheres.
    GO:0060996    dendritic spine development    The process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission.
    GO:0060997    dendritic spine morphogenesis    The process in which the anatomical structures of a dendritic spine are generated and organized. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission.
    GO:0048013    ephrin receptor signaling pathway    The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin.
    GO:0042472    inner ear morphogenesis    The process in which the anatomical structures of the inner ear are generated and organized. The inner ear is the structure in vertebrates that contains the organs of balance and hearing. It consists of soft hollow sensory structures (the membranous labyrinth) containing fluid (endolymph) surrounded by fluid (perilymph) and encased in a bony cavity (the bony labyrinth). It consists of two chambers, the sacculus and utriculus, from which arise the cochlea and semicircular canals respectively.
    GO:0007612    learning    Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0050771    negative regulation of axonogenesis    Any process that stops, prevents, or reduces the frequency, rate or extent of axonogenesis.
    GO:0007399    nervous system development    The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
    GO:0021631    optic nerve morphogenesis    The process in which the anatomical structure of the optic nerve is generated and organized. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain.
    GO:0060021    palate development    The biological process whose specific outcome is the progression of the palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The palate is the partition that separates the nasal and oral cavities.
    GO:0018108    peptidyl-tyrosine phosphorylation    The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0048170    positive regulation of long-term neuronal synaptic plasticity    A process that increases long-term neuronal synaptic plasticity, the ability of neuronal synapses to change long-term as circumstances require. Long-term neuronal synaptic plasticity generally involves increase or decrease in actual synapse numbers.
    GO:0051965    positive regulation of synapse assembly    Any process that activates, maintains or increases the frequency, rate or extent of synapse assembly, the aggregation, arrangement and bonding together of a set of components to form a synapse.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0050770    regulation of axonogenesis    Any process that modulates the frequency, rate or extent of axonogenesis, the generation of an axon, the long process of a neuron.
    GO:0050878    regulation of body fluid levels    Any process that modulates the levels of body fluids.
    GO:0048168    regulation of neuronal synaptic plasticity    A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers.
    GO:0031290    retinal ganglion cell axon guidance    The process in which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues.
    GO:0007169    transmembrane receptor protein tyrosine kinase signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0001655    urogenital system development    The process whose specific outcome is the progression of the urogenital system over time, from its formation to the mature structure.
cellular component
    GO:0030424    axon    The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

Chain E,F,G,H   (EFNB2_MOUSE | P52800)
molecular function
    GO:0046875    ephrin receptor binding    Interacting selectively and non-covalently with an ephrin receptor.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0031295    T cell costimulation    The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the T cell receptor to augment T cell activation.
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0009887    animal organ morphogenesis    Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0048514    blood vessel morphogenesis    The process in which the anatomical structures of blood vessels are generated and organized. The blood vessel is the vasculature carrying blood.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0016477    cell migration    The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
    GO:0002042    cell migration involved in sprouting angiogenesis    The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels involved in sprouting angiogenesis.
    GO:0048013    ephrin receptor signaling pathway    The series of molecular signals generated as a consequence of an ephrin receptor binding to an ephrin.
    GO:0001945    lymph vessel development    The process whose specific outcome is the progression of a lymph vessel over time, from its formation to the mature structure.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0010839    negative regulation of keratinocyte proliferation    Any process that decreases the rate, frequency or extent of keratinocyte proliferation. Keratinocyte proliferation is the multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population.
    GO:0072178    nephric duct morphogenesis    The process in which the anatomical structures of the nephric duct are generated and organized. A nephric duct is a tube that drains a primitive kidney.
    GO:0007399    nervous system development    The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
    GO:1903849    positive regulation of aorta morphogenesis    Any process that activates or increases the frequency, rate or extent of aorta morphogenesis.
    GO:2000727    positive regulation of cardiac muscle cell differentiation    Any process that activates or increases the frequency, rate or extent of cardiac muscle cell differentiation.
    GO:0050920    regulation of chemotaxis    Any process that modulates the frequency, rate or extent of the directed movement of a motile cell or organism in response to a specific chemical concentration gradient.
    GO:0048845    venous blood vessel morphogenesis    The process in which the anatomical structures of venous blood vessels are generated and organized. Veins are blood vessels that transport blood from the body and its organs to the heart.
cellular component
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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        EFNB2_MOUSE | P528001iko
        EPHB2_MOUSE | P547631jpa 1nuk 1shw 2hen 3etp

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