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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE EPHB2-EPHRINB2 COMPLEX
Keywords DEVELOPMENTAL PROTEIN, TRANSFERASE-TRANSFERASE RECEPTOR COMP
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1KGY     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   EPHRIN TYPE-B RECEPTOR 2  A 181 1463 0
2  Protein   EPHRIN TYPE-B RECEPTOR 2  B 181 1463 0
3  Protein   EPHRIN TYPE-B RECEPTOR 2  C 181 1463 0
4  Protein   EPHRIN TYPE-B RECEPTOR 2  D 181 1463 0
5  Protein   EPHRIN-B2  E 138 1102 0
6  Protein   EPHRIN-B2  F 138 1102 0
7  Protein   EPHRIN-B2  G 138 1102 0
8  Protein   EPHRIN-B2  H 138 1102 0
total       1276 10260 0

Proteins
Unit 1 ALA27 GLU28 GLU29 THR30 LEU31 MET32 ASP33 SER34 THR35 THR36 ALA37 THR38 ALA39 GLU40 LEU41 GLY42 TRP43 MET44 VAL45 HIS46 PRO47 PRO48 SER49 GLY50 TRP51 GLU52 GLU53 VAL54 SER55 GLY56 TYR57 ASP58 GLU59 ASN60 MET61 ASN62 THR63 ILE64 ARG65 THR66 TYR67 GLN68 VAL69 CYS70 ASN71 VAL72 PHE73 GLU74 SER75 SER76 GLN77 ASN78 ASN79 TRP80 LEU81 ARG82 THR83 LYS84 PHE85 ILE86 ARG87 ARG88 ARG89 GLY90 ALA91 HIS92 ARG93 ILE94 HIS95 VAL96 GLU97 MET98 LYS99 PHE100 SER101 VAL102 ARG103 ASP104 CYS105 SER106 SER107 ILE108 PRO109 SER110 VAL111 PRO112 GLY113 SER114 CYS115 LYS116 GLU117 THR118 PHE119 ASN120 LEU121 TYR122 TYR123 TYR124 GLU125 ALA126 ASP127 PHE128 ASP129 LEU130 ALA131 THR132 LYS133 THR134 PHE135 PRO136 ASN137 TRP138 MET139 GLU140 ASN141 PRO142 TRP143 VAL144 LYS145 VAL146 ASP147 THR148 ILE149 ALA150 ALA151 ASP152 GLU153 SER154 PHE155 SER156 GLN157 VAL158 ASP159 LEU160 GLY161 GLY162 ARG163 VAL164 MET165 LYS166 ILE167 ASN168 THR169 GLU170 VAL171 ARG172 SER173 PHE174 GLY175 PRO176 VAL177 SER178 ARG179 ASN180 GLY181 PHE182 TYR183 LEU184 ALA185 PHE186 GLN187 ASP188 TYR189 GLY190 GLY191 CYS192 MET193 SER194 LEU195 ILE196 ALA197 VAL198 ARG199 VAL200 PHE201 TYR202 ARG203 LYS204 CYS205 PRO206 ARG207
Unit 2 ALA227 GLU228 GLU229 THR230 LEU231 MET232 ASP233 SER234 THR235 THR236 ALA237 THR238 ALA239 GLU240 LEU241 GLY242 TRP243 MET244 VAL245 HIS246 PRO247 PRO248 SER249 GLY250 TRP251 GLU252 GLU253 VAL254 SER255 GLY256 TYR257 ASP258 GLU259 ASN260 MET261 ASN262 THR263 ILE264 ARG265 THR266 TYR267 GLN268 VAL269 CYS270 ASN271 VAL272 PHE273 GLU274 SER275 SER276 GLN277 ASN278 ASN279 TRP280 LEU281 ARG282 THR283 LYS284 PHE285 ILE286 ARG287 ARG288 ARG289 GLY290 ALA291 HIS292 ARG293 ILE294 HIS295 VAL296 GLU297 MET298 LYS299 PHE300 SER301 VAL302 ARG303 ASP304 CYS305 SER306 SER307 ILE308 PRO309 SER310 VAL311 PRO312 GLY313 SER314 CYS315 LYS316 GLU317 THR318 PHE319 ASN320 LEU321 TYR322 TYR323 TYR324 GLU325 ALA326 ASP327 PHE328 ASP329 LEU330 ALA331 THR332 LYS333 THR334 PHE335 PRO336 ASN337 TRP338 MET339 GLU340 ASN341 PRO342 TRP343 VAL344 LYS345 VAL346 ASP347 THR348 ILE349 ALA350 ALA351 ASP352 GLU353 SER354 PHE355 SER356 GLN357 VAL358 ASP359 LEU360 GLY361 GLY362 ARG363 VAL364 MET365 LYS366 ILE367 ASN368 THR369 GLU370 VAL371 ARG372 SER373 PHE374 GLY375 PRO376 VAL377 SER378 ARG379 ASN380 GLY381 PHE382 TYR383 LEU384 ALA385 PHE386 GLN387 ASP388 TYR389 GLY390 GLY391 CYS392 MET393 SER394 LEU395 ILE396 ALA397 VAL398 ARG399 VAL400 PHE401 TYR402 ARG403 LYS404 CYS405 PRO406 ARG407
Unit 3 ALA427 GLU428 GLU429 THR430 LEU431 MET432 ASP433 SER434 THR435 THR436 ALA437 THR438 ALA439 GLU440 LEU441 GLY442 TRP443 MET444 VAL445 HIS446 PRO447 PRO448 SER449 GLY450 TRP451 GLU452 GLU453 VAL454 SER455 GLY456 TYR457 ASP458 GLU459 ASN460 MET461 ASN462 THR463 ILE464 ARG465 THR466 TYR467 GLN468 VAL469 CYS470 ASN471 VAL472 PHE473 GLU474 SER475 SER476 GLN477 ASN478 ASN479 TRP480 LEU481 ARG482 THR483 LYS484 PHE485 ILE486 ARG487 ARG488 ARG489 GLY490 ALA491 HIS492 ARG493 ILE494 HIS495 VAL496 GLU497 MET498 LYS499 PHE500 SER501 VAL502 ARG503 ASP504 CYS505 SER506 SER507 ILE508 PRO509 SER510 VAL511 PRO512 GLY513 SER514 CYS515 LYS516 GLU517 THR518 PHE519 ASN520 LEU521 TYR522 TYR523 TYR524 GLU525 ALA526 ASP527 PHE528 ASP529 LEU530 ALA531 THR532 LYS533 THR534 PHE535 PRO536 ASN537 TRP538 MET539 GLU540 ASN541 PRO542 TRP543 VAL544 LYS545 VAL546 ASP547 THR548 ILE549 ALA550 ALA551 ASP552 GLU553 SER554 PHE555 SER556 GLN557 VAL558 ASP559 LEU560 GLY561 GLY562 ARG563 VAL564 MET565 LYS566 ILE567 ASN568 THR569 GLU570 VAL571 ARG572 SER573 PHE574 GLY575 PRO576 VAL577 SER578 ARG579 ASN580 GLY581 PHE582 TYR583 LEU584 ALA585 PHE586 GLN587 ASP588 TYR589 GLY590 GLY591 CYS592 MET593 SER594 LEU595 ILE596 ALA597 VAL598 ARG599 VAL600 PHE601 TYR602 ARG603 LYS604 CYS605 PRO606 ARG607
Unit 4 ALA627 GLU628 GLU629 THR630 LEU631 MET632 ASP633 SER634 THR635 THR636 ALA637 THR638 ALA639 GLU640 LEU641 GLY642 TRP643 MET644 VAL645 HIS646 PRO647 PRO648 SER649 GLY650 TRP651 GLU652 GLU653 VAL654 SER655 GLY656 TYR657 ASP658 GLU659 ASN660 MET661 ASN662 THR663 ILE664 ARG665 THR666 TYR667 GLN668 VAL669 CYS670 ASN671 VAL672 PHE673 GLU674 SER675 SER676 GLN677 ASN678 ASN679 TRP680 LEU681 ARG682 THR683 LYS684 PHE685 ILE686 ARG687 ARG688 ARG689 GLY690 ALA691 HIS692 ARG693 ILE694 HIS695 VAL696 GLU697 MET698 LYS699 PHE700 SER701 VAL702 ARG703 ASP704 CYS705 SER706 SER707 ILE708 PRO709 SER710 VAL711 PRO712 GLY713 SER714 CYS715 LYS716 GLU717 THR718 PHE719 ASN720 LEU721 TYR722 TYR723 TYR724 GLU725 ALA726 ASP727 PHE728 ASP729 LEU730 ALA731 THR732 LYS733 THR734 PHE735 PRO736 ASN737 TRP738 MET739 GLU740 ASN741 PRO742 TRP743 VAL744 LYS745 VAL746 ASP747 THR748 ILE749 ALA750 ALA751 ASP752 GLU753 SER754 PHE755 SER756 GLN757 VAL758 ASP759 LEU760 GLY761 GLY762 ARG763 VAL764 MET765 LYS766 ILE767 ASN768 THR769 GLU770 VAL771 ARG772 SER773 PHE774 GLY775 PRO776 VAL777 SER778 ARG779 ASN780 GLY781 PHE782 TYR783 LEU784 ALA785 PHE786 GLN787 ASP788 TYR789 GLY790 GLY791 CYS792 MET793 SER794 LEU795 ILE796 ALA797 VAL798 ARG799 VAL800 PHE801 TYR802 ARG803 LYS804 CYS805 PRO806 ARG807
Unit 5 ILE1031 VAL1032 LEU1033 GLU1034 PRO1035 ILE1036 TYR1037 TRP1038 ASN1039 SER1040 SER1041 ASN1042 SER1043 LYS1044 PHE1045 LEU1046 PRO1047 GLY1048 GLY1049 GLY1050 LEU1051 VAL1052 LEU1053 TYR1054 PRO1055 GLN1056 ILE1057 GLY1058 ASP1059 LYS1060 LEU1061 ASP1062 ILE1063 ILE1064 CYS1065 PRO1066 LYS1067 VAL1068 ASP1069 SER1070 LYS1071 THR1072 VAL1073 GLY1074 GLN1075 TYR1076 GLU1077 TYR1078 TYR1079 LYS1080 VAL1081 TYR1082 MET1083 VAL1084 ASP1085 LYS1086 ASP1087 GLN1088 ALA1089 ASP1090 ARG1091 CYS1092 THR1093 ILE1094 LYS1095 LYS1096 GLU1097 ASN1098 THR1099 PRO1100 LEU1101 LEU1102 ASN1103 CYS1104 ALA1105 ARG1106 PRO1107 ASP1108 GLN1109 ASP1110 VAL1111 LYS1112 PHE1113 THR1114 ILE1115 LYS1116 PHE1117 GLN1118 GLU1119 PHE1120 SER1121 PRO1122 ASN1123 LEU1124 TRP1125 GLY1126 LEU1127 GLU1128 PHE1129 GLN1130 LYS1131 ASN1132 LYS1133 ASP1134 TYR1135 TYR1136 ILE1137 ILE1138 SER1139 THR1140 SER1141 ASN1142 GLY1143 SER1144 LEU1145 GLU1146 GLY1147 LEU1148 ASP1149 ASN1150 GLN1151 GLU1152 GLY1153 GLY1154 VAL1155 CYS1156 GLN1157 THR1158 ARG1159 ALA1160 MET1161 LYS1162 ILE1163 LEU1164 MET1165 LYS1166 VAL1167 GLY1168
Unit 6 ILE1231 VAL1232 LEU1233 GLU1234 PRO1235 ILE1236 TYR1237 TRP1238 ASN1239 SER1240 SER1241 ASN1242 SER1243 LYS1244 PHE1245 LEU1246 PRO1247 GLY1248 GLY1249 GLY1250 LEU1251 VAL1252 LEU1253 TYR1254 PRO1255 GLN1256 ILE1257 GLY1258 ASP1259 LYS1260 LEU1261 ASP1262 ILE1263 ILE1264 CYS1265 PRO1266 LYS1267 VAL1268 ASP1269 SER1270 LYS1271 THR1272 VAL1273 GLY1274 GLN1275 TYR1276 GLU1277 TYR1278 TYR1279 LYS1280 VAL1281 TYR1282 MET1283 VAL1284 ASP1285 LYS1286 ASP1287 GLN1288 ALA1289 ASP1290 ARG1291 CYS1292 THR1293 ILE1294 LYS1295 LYS1296 GLU1297 ASN1298 THR1299 PRO1300 LEU1301 LEU1302 ASN1303 CYS1304 ALA1305 ARG1306 PRO1307 ASP1308 GLN1309 ASP1310 VAL1311 LYS1312 PHE1313 THR1314 ILE1315 LYS1316 PHE1317 GLN1318 GLU1319 PHE1320 SER1321 PRO1322 ASN1323 LEU1324 TRP1325 GLY1326 LEU1327 GLU1328 PHE1329 GLN1330 LYS1331 ASN1332 LYS1333 ASP1334 TYR1335 TYR1336 ILE1337 ILE1338 SER1339 THR1340 SER1341 ASN1342 GLY1343 SER1344 LEU1345 GLU1346 GLY1347 LEU1348 ASP1349 ASN1350 GLN1351 GLU1352 GLY1353 GLY1354 VAL1355 CYS1356 GLN1357 THR1358 ARG1359 ALA1360 MET1361 LYS1362 ILE1363 LEU1364 MET1365 LYS1366 VAL1367 GLY1368
Unit 7 ILE1431 VAL1432 LEU1433 GLU1434 PRO1435 ILE1436 TYR1437 TRP1438 ASN1439 SER1440 SER1441 ASN1442 SER1443 LYS1444 PHE1445 LEU1446 PRO1447 GLY1448 GLY1449 GLY1450 LEU1451 VAL1452 LEU1453 TYR1454 PRO1455 GLN1456 ILE1457 GLY1458 ASP1459 LYS1460 LEU1461 ASP1462 ILE1463 ILE1464 CYS1465 PRO1466 LYS1467 VAL1468 ASP1469 SER1470 LYS1471 THR1472 VAL1473 GLY1474 GLN1475 TYR1476 GLU1477 TYR1478 TYR1479 LYS1480 VAL1481 TYR1482 MET1483 VAL1484 ASP1485 LYS1486 ASP1487 GLN1488 ALA1489 ASP1490 ARG1491 CYS1492 THR1493 ILE1494 LYS1495 LYS1496 GLU1497 ASN1498 THR1499 PRO1500 LEU1501 LEU1502 ASN1503 CYS1504 ALA1505 ARG1506 PRO1507 ASP1508 GLN1509 ASP1510 VAL1511 LYS1512 PHE1513 THR1514 ILE1515 LYS1516 PHE1517 GLN1518 GLU1519 PHE1520 SER1521 PRO1522 ASN1523 LEU1524 TRP1525 GLY1526 LEU1527 GLU1528 PHE1529 GLN1530 LYS1531 ASN1532 LYS1533 ASP1534 TYR1535 TYR1536 ILE1537 ILE1538 SER1539 THR1540 SER1541 ASN1542 GLY1543 SER1544 LEU1545 GLU1546 GLY1547 LEU1548 ASP1549 ASN1550 GLN1551 GLU1552 GLY1553 GLY1554 VAL1555 CYS1556 GLN1557 THR1558 ARG1559 ALA1560 MET1561 LYS1562 ILE1563 LEU1564 MET1565 LYS1566 VAL1567 GLY1568
Unit 8 ILE1631 VAL1632 LEU1633 GLU1634 PRO1635 ILE1636 TYR1637 TRP1638 ASN1639 SER1640 SER1641 ASN1642 SER1643 LYS1644 PHE1645 LEU1646 PRO1647 GLY1648 GLY1649 GLY1650 LEU1651 VAL1652 LEU1653 TYR1654 PRO1655 GLN1656 ILE1657 GLY1658 ASP1659 LYS1660 LEU1661 ASP1662 ILE1663 ILE1664 CYS1665 PRO1666 LYS1667 VAL1668 ASP1669 SER1670 LYS1671 THR1672 VAL1673 GLY1674 GLN1675 TYR1676 GLU1677 TYR1678 TYR1679 LYS1680 VAL1681 TYR1682 MET1683 VAL1684 ASP1685 LYS1686 ASP1687 GLN1688 ALA1689 ASP1690 ARG1691 CYS1692 THR1693 ILE1694 LYS1695 LYS1696 GLU1697 ASN1698 THR1699 PRO1700 LEU1701 LEU1702 ASN1703 CYS1704 ALA1705 ARG1706 PRO1707 ASP1708 GLN1709 ASP1710 VAL1711 LYS1712 PHE1713 THR1714 ILE1715 LYS1716 PHE1717 GLN1718 GLU1719 PHE1720 SER1721 PRO1722 ASN1723 LEU1724 TRP1725 GLY1726 LEU1727 GLU1728 PHE1729 GLN1730 LYS1731 ASN1732 LYS1733 ASP1734 TYR1735 TYR1736 ILE1737 ILE1738 SER1739 THR1740 SER1741 ASN1742 GLY1743 SER1744 LEU1745 GLU1746 GLY1747 LEU1748 ASP1749 ASN1750 GLN1751 GLU1752 GLY1753 GLY1754 VAL1755 CYS1756 GLN1757 THR1758 ARG1759 ALA1760 MET1761 LYS1762 ILE1763 LEU1764 MET1765 LYS1766 VAL1767 GLY1768

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany