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1KGY
Asym. Unit
Info
Asym.Unit (213 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EPHB2-EPHRINB2 COMPLEX
Authors
:
J. P. Himanen, K. R. Rajashankar, M. Lackmann, C. A. Cowan, M. Henkemeye D. B. Nikolov
Date
:
28 Nov 01 (Deposition) - 28 May 02 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,D,E,H (1x)
Biol. Unit 2: B,C,F,G (1x)
Keywords
:
Developmental Protein, Transferase-Transferase Receptor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. P. Himanen, K. R. Rajashankar, M. Lackmann, C. A. Cowan, M. Henkemeyer, D. B. Nikolov
Crystal Structure Of An Eph Receptor-Ephrin Complex.
Nature V. 414 933 2001
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(4, 16)
Info
All PROSITE Patterns/Profiles
1: EPH_LBD (A:28-207,B:228-407,C:428-607,D:628...)
2: EPHRIN_RBD_2 (E:1031-1167,F:1231-1367,G:1431-156...)
3: EPHRIN_RBD_1 (E:1112-1139,F:1312-1339,G:1512-153...)
4: RECEPTOR_TYR_KIN_V_1 (A:186-206,B:386-406,C:586-606,D:78...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPH_LBD
PS51550
Eph receptor ligand-binding domain profile.
EPHB2_MOUSE
20-202
4
A:28-207
B:228-407
C:428-607
D:628-807
2
EPHRIN_RBD_2
PS51551
Ephrin receptor-binding (ephrin RBD) domain profile.
EFNB2_MOUSE
31-167
4
E:1031-1167
F:1231-1367
G:1431-1567
H:1631-1767
3
EPHRIN_RBD_1
PS01299
Ephrin receptor-binding (ephrin RBD) domain signature.
EFNB2_MOUSE
112-139
4
E:1112-1139
F:1312-1339
G:1512-1539
H:1712-1739
4
RECEPTOR_TYR_KIN_V_1
PS00790
Receptor tyrosine kinase class V signature 1.
EPHB2_MOUSE
178-198
4
A:186-206
B:386-406
C:586-606
D:786-806
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1kgye_ (E:)
1b: SCOP_d1kgyf_ (F:)
1c: SCOP_d1kgyg_ (G:)
1d: SCOP_d1kgyh_ (H:)
2a: SCOP_d1kgya_ (A:)
2b: SCOP_d1kgyb_ (B:)
2c: SCOP_d1kgyc_ (C:)
2d: SCOP_d1kgyd_ (D:)
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Protein Domains
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Organisms
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)
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)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Ephrin ectodomain
(11)
Protein domain
:
Ephrin-b2 ectodomain
(4)
Mouse (Mus musculus) [TaxId: 10090]
(2)
1a
d1kgye_
E:
1b
d1kgyf_
F:
1c
d1kgyg_
G:
1d
d1kgyh_
H:
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Ephrin receptor ligand binding domain
(15)
Protein domain
:
Ligand-binding domain of the ephb2 receptor tyrosine kinase
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
2a
d1kgya_
A:
2b
d1kgyb_
B:
2c
d1kgyc_
C:
2d
d1kgyd_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1kgyE00 (E:1031-1168)
1b: CATH_1kgyF00 (F:1231-1368)
1c: CATH_1kgyG00 (G:1431-1568)
1d: CATH_1kgyH00 (H:1631-1768)
2a: CATH_1kgyA00 (A:27-207)
2b: CATH_1kgyB00 (B:227-407)
2c: CATH_1kgyC00 (C:427-607)
2d: CATH_1kgyD00 (D:627-807)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
House mouse (Mus musculus)
(4)
1a
1kgyE00
E:1031-1168
1b
1kgyF00
F:1231-1368
1c
1kgyG00
G:1431-1568
1d
1kgyH00
H:1631-1768
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
House mouse (Mus musculus)
(6)
2a
1kgyA00
A:27-207
2b
1kgyB00
B:227-407
2c
1kgyC00
C:427-607
2d
1kgyD00
D:627-807
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ephrin_1kgyH01 (H:1631-1768)
1b: PFAM_Ephrin_1kgyH02 (H:1631-1768)
1c: PFAM_Ephrin_1kgyH03 (H:1631-1768)
1d: PFAM_Ephrin_1kgyH04 (H:1631-1768)
2a: PFAM_Ephrin_lbd_1kgyD01 (D:636-807)
2b: PFAM_Ephrin_lbd_1kgyD02 (D:636-807)
2c: PFAM_Ephrin_lbd_1kgyD03 (D:636-807)
2d: PFAM_Ephrin_lbd_1kgyD04 (D:636-807)
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Clan
:
CU_oxidase
(192)
Family
:
Ephrin
(10)
Mus musculus (Mouse)
(3)
1a
Ephrin-1kgyH01
H:1631-1768
1b
Ephrin-1kgyH02
H:1631-1768
1c
Ephrin-1kgyH03
H:1631-1768
1d
Ephrin-1kgyH04
H:1631-1768
Clan
:
GBD
(153)
Family
:
Ephrin_lbd
(12)
Mus musculus (Mouse)
(3)
2a
Ephrin_lbd-1kgyD01
D:636-807
2b
Ephrin_lbd-1kgyD02
D:636-807
2c
Ephrin_lbd-1kgyD03
D:636-807
2d
Ephrin_lbd-1kgyD04
D:636-807
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Asym.Unit (213 KB)
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