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(-) Description

Title :  CONCANAVALIN A-HEXAPEPTIDE COMPLEX
 
Authors :  D. Jain, K. Kaur, D. M. Salunke
Date :  30 Jul 01  (Deposition) - 19 Dec 01  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,P,Q,R,S
Biol. Unit 1:  A,B,P,Q  (2x)
Biol. Unit 2:  C,D,R,S  (2x)
Keywords :  Lectin, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Jain, K. J. Kaur, D. M. Salunke
Enhanced Binding Of A Rationally Designed Peptide Ligand Of Concanavalin A Arises From Improved Geometrical Complementarity.
Biochemistry V. 40 12059 2001
PubMed-ID: 11580281  |  Reference-DOI: 10.1021/BI011254F
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CONCANAVALIN-BR
    Chains: A, B, C, D
    Organism Common: JACK BEAN
    Organism Scientific: CANAVALIA ENSIFORMIS
    Organism Taxid: 3823
    Synonym: CON BR, CONCANAVALIN A
 
Molecule 2 - HEXAPEPTIDE
    Chains: P, Q, R, S
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDPQRS
Biological Unit 1 (2x): AB  PQ  
Biological Unit 2 (2x):   CD  RS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric Unit (4, 16)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2CA4Ligand/IonCALCIUM ION
3MN4Ligand/IonMANGANESE (II) ION
4NH24Mod. Amino AcidAMINO GROUP
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2CA-1Ligand/IonCALCIUM ION
3MN-1Ligand/IonMANGANESE (II) ION
4NH24Mod. Amino AcidAMINO GROUP
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2CA-1Ligand/IonCALCIUM ION
3MN-1Ligand/IonMANGANESE (II) ION
4NH24Mod. Amino AcidAMINO GROUP

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:320BINDING SITE FOR RESIDUE MN A 301
2AC2SOFTWAREASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:328BINDING SITE FOR RESIDUE CA A 302
3AC3SOFTWAREGLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:307BINDING SITE FOR RESIDUE MN B 303
4AC4SOFTWAREASP B:10 , TYR B:12 , ASN B:14 , ASP B:19BINDING SITE FOR RESIDUE CA B 304
5AC5SOFTWAREGLU C:8 , ASP C:10 , ASP C:19 , HIS C:24BINDING SITE FOR RESIDUE MN C 305
6AC6SOFTWAREASP C:10 , TYR C:12 , ASN C:14 , ASP C:19 , HOH C:342BINDING SITE FOR RESIDUE CA C 306
7AC7SOFTWAREGLU D:8 , ASP D:10 , ASP D:19 , HIS D:24BINDING SITE FOR RESIDUE MN D 307
8AC8SOFTWAREASP D:10 , TYR D:12 , ASN D:14 , ASP D:19 , HOH D:321BINDING SITE FOR RESIDUE CA D 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JOJ)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Ala B:207 -Asp B:208
2Ala C:207 -Asp C:208
3Ala D:207 -Asp D:208

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JOJ)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LECTIN_LEGUME_BETAPS00307 Legume lectins beta-chain signature.CONA_CANBR5-11
 
 
 		  4A:5-11
B:5-11
C:5-11
D:5-11
2LECTIN_LEGUME_ALPHAPS00308 Legume lectins alpha-chain signature.CONA_CANBR85-94
 
 
 		  4A:85-94
B:85-94
C:85-94
D:85-94
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LECTIN_LEGUME_BETAPS00307 Legume lectins beta-chain signature.CONA_CANBR5-11
 
 
 		  4A:5-11
B:5-11
-
-
2LECTIN_LEGUME_ALPHAPS00308 Legume lectins alpha-chain signature.CONA_CANBR85-94
 
 
 		  4A:85-94
B:85-94
-
-
Biological Unit 2 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LECTIN_LEGUME_BETAPS00307 Legume lectins beta-chain signature.CONA_CANBR5-11
 
 
 		  4-
-
C:5-11
D:5-11
2LECTIN_LEGUME_ALPHAPS00308 Legume lectins alpha-chain signature.CONA_CANBR85-94
 
 
 		  4-
-
C:85-94
D:85-94

(-) Exons   (0, 0)

(no "Exon" information available for 1JOJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
 aligned with CONA_CANBR | P55915 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
           CONA_CANBR     1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTEGNLRLTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
               SCOP domains d1joja_ A: Concanavalin A                                                                                                                                                                                                                     SCOP domains
               CATH domains 1jojA00 A:1-237  [code=2.60.120.200, no name defined]                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.............eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhh...eeeeeeeeee.....eeeeeeeeeeeeeee.....eeeeeeee.........eeeee..eeee..eee.............eeeeeee...ee.....eeeeeeeeeeeeeee........eeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----LECTIN_-------------------------------------------------------------------------LECTIN_LEG----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1joj A   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       


Chain A from PDB  Type:PROTEIN  Length:237
 aligned with CONA_CANEN | P02866 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:238
                                                                                                                      1                                                                                                                                                   
                                     -         -         -         -         -         -         -         -         -|       10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           CONA_CANEN     - ------------------------------------------------------------------------------------------MAISKKSSLFLPIFTFITMFLMVVNKVSSSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 148
               SCOP domains d1joja_ A: Concanavalin A                                                                                                                                                                                                                      SCOP domains
               CATH domains 1jojA00 A:1-237  [code=2.60.120.200, no name defined]                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.............eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhh...eeeeeeeeee.....eeeeee-eeeeeeeee.....eeeeeeee.........eeeee..eeee..eee.............eeeeeee...ee.....eeeeeeeeeeeeeee........eeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1joj A   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILS-WSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       109       119       129       139       149       159       169       179       189       199       209       219       229        
                                                                                                                                     108 |                                                                                                                                
                                                                                                                                       109                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:237
 aligned with CONA_CANBR | P55915 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
           CONA_CANBR     1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTEGNLRLTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
               SCOP domains d1jojb_ B: Concanavalin A                                                                                                                                                                                                                     SCOP domains
               CATH domains 1jojB00 B:1-237  [code=2.60.120.200, no name defined]                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...hhhhh.....eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhh...eeeeeeeee........eeeeeeeeeeee......eeeeeeee.........eeeee....hhh..ee..............eeeeee...ee.......eeeeeeeeeee..........eeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----LECTIN_-------------------------------------------------------------------------LECTIN_LEG----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1joj B   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       


Chain B from PDB  Type:PROTEIN  Length:237
 aligned with CONA_CANEN | P02866 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:238
                                                                                                                      1                                                                                                                                                   
                                     -         -         -         -         -         -         -         -         -|       10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           CONA_CANEN     - ------------------------------------------------------------------------------------------MAISKKSSLFLPIFTFITMFLMVVNKVSSSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 148
               SCOP domains d1jojb_ B: Concanavalin A                                                                                                                                                                                                                      SCOP domains
               CATH domains 1jojB00 B:1-237  [code=2.60.120.200, no name defined]                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...hhhhh.....eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhh...eeeeeeeee........eeee-eeeeeeee......eeeeeeee.........eeeee....hhh..ee..............eeeeee...ee.......eeeeeeeeeee..........eeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1joj B   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILS-WSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       109       119       129       139       149       159       169       179       189       199       209       219       229        
                                                                                                                                     108 |                                                                                                                                
                                                                                                                                       109                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:237
 aligned with CONA_CANBR | P55915 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
           CONA_CANBR     1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTEGNLRLTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
               SCOP domains d1jojc_ C: Concanavalin A                                                                                                                                                                                                                     SCOP domains
               CATH domains 1jojC00 C:1-237  [code=2.60.120.200, no name defined]                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...hhhhh.....eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhh...eeeeeeeee........eeeeeeeeeeeee.....eeeeeeee.........eeeee....hhhhhee..............eeeeee...ee.....eeeeeeeeeeeee..........eeeeeee..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----LECTIN_-------------------------------------------------------------------------LECTIN_LEG----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1joj C   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       


Chain C from PDB  Type:PROTEIN  Length:237
 aligned with CONA_CANEN | P02866 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:238
                                                                                                                      1                                                                                                                                                   
                                     -         -         -         -         -         -         -         -         -|       10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           CONA_CANEN     - ------------------------------------------------------------------------------------------MAISKKSSLFLPIFTFITMFLMVVNKVSSSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 148
               SCOP domains d1jojc_ C: Concanavalin A                                                                                                                                                                                                                      SCOP domains
               CATH domains 1jojC00 C:1-237  [code=2.60.120.200, no name defined]                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...hhhhh.....eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhh...eeeeeeeee........eeee-eeeeeeeee.....eeeeeeee.........eeeee....hhhhhee..............eeeeee...ee.....eeeeeeeeeeeee..........eeeeeee..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1joj C   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILS-WSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       109       119       129       139       149       159       169       179       189       199       209       219       229        
                                                                                                                                     108 |                                                                                                                                
                                                                                                                                       109                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:237
 aligned with CONA_CANBR | P55915 from UniProtKB/Swiss-Prot  Length:237

    Alignment length:237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       
           CONA_CANBR     1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTEGNLRLTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
               SCOP domains d1jojd_ D: Concanavalin A                                                                                                                                                                                                                     SCOP domains
               CATH domains 1jojD00 D:1-237  [code=2.60.120.200, no name defined]                                                                                                                                                                                         CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------Lectin_legB-1jojD01 D:124-237                                                                                      Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------Lectin_legB-1jojD02 D:124-237                                                                                      Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------------Lectin_legB-1jojD03 D:124-237                                                                                      Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------------Lectin_legB-1jojD04 D:124-237                                                                                      Pfam domains (4)
         Sec.struct. author ...eeeeeee.............eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhh...eeeeeeeeee.....eeeeeeeeeeeeee......eeeeeeee.........eeeee.........ee.............eeeeeee...ee.......eeeeeeeeeeeee........eeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----LECTIN_-------------------------------------------------------------------------LECTIN_LEG----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1joj D   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       


Chain D from PDB  Type:PROTEIN  Length:237
 aligned with CONA_CANEN | P02866 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:238
                                                                                                                      1                                                                                                                                                   
                                     -         -         -         -         -         -         -         -         -|       10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           CONA_CANEN     - ------------------------------------------------------------------------------------------MAISKKSSLFLPIFTFITMFLMVVNKVSSSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 148
               SCOP domains d1jojd_ D: Concanavalin A                                                                                                                                                                                                                      SCOP domains
               CATH domains 1jojD00 D:1-237  [code=2.60.120.200, no name defined]                                                                                                                                                                                          CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------Lectin_legB-1jojD01 D:124-237                                                                                      Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------Lectin_legB-1jojD02 D:124-237                                                                                      Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------Lectin_legB-1jojD03 D:124-237                                                                                      Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------Lectin_legB-1jojD04 D:124-237                                                                                      Pfam domains (4)
         Sec.struct. author ...eeeeeee.............eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhh...eeeeeeeeee.....eeeeee-eeeeeeee......eeeeeeee.........eeeee.........ee.............eeeeeee...ee.......eeeeeeeeeeeee........eeeeeeee.........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1joj D   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILS-WSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       109       119       129       139       149       159       169       179       189       199       209       219       229        
                                                                                                                                     108 |                                                                                                                                
                                                                                                                                       109                                                                                                                                


Chain P from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 1joj P   1 xMYWYPYx   8
                            |      |
                            1-ACE  8-NH2


Chain Q from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 1joj Q   1 xMYWYPYx   8
                            |      |
                            |      8-NH2
                            1-ACE   


Chain R from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 1joj R   1 xMYWYPYx   8
                            |      |
                            |      8-NH2
                            1-ACE   


Chain S from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 1joj S   1 xMYWYPYx   8
                            |      |
                            |      8-NH2
                            1-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
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 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Concanavalin (293)

(-) Gene Ontology  (4, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (CONA_CANEN | P02866)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0005537    mannose binding    Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Chain A,B,C,D   (CONA_CANBR | P55915)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0005537    mannose binding    Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  CONA_CANBR | P55915
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  CONA_CANEN | P02866
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CONA_CANBR | P55915: 1azd 1c57 1dq0 1dq1 1dq2 1dq4 1dq5 1jui 1jyc 1jyi 1qdc 1qdo 2cyf 3ju9 4h55 4p14 4pcr
        CONA_CANEN | P02866: 1apn 1bxh 1c57 1ces 1cjp 1cn1 1con 1cvn 1dq0 1dq1 1dq2 1dq4 1dq5 1dq6 1enq 1enr 1ens 1gic 1gkb 1hqw 1i3h 1jbc 1jn2 1jui 1jw6 1jyc 1jyi 1nls 1nxd 1ona 1qgl 1qny 1scr 1scs 1tei 1val 1vam 1xqn 2cna 2ctv 2enr 2uu8 2yz4 3cna 3d4k 3enr 3nwk 4p9w 4p9x 4p9y 4pf5 5cna

(-) Related Entries Specified in the PDB File

1jui CONCANAVALIN A/10-MER PEPTIDE COMPLEX
1jyc CONCANAVALIN A/15-MER PEPTIDE COMPLEX
1jyi CONCANAVALIN A/12-MER PEPTIDE COMPLEX