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(-) Description

Title :  CRYSTAL STRUCTURE OF CANAVALIA BRASILIENSIS (CONBR) COMPLEXED WITH ADENINE
 
Authors :  P. Delatorre, B. A. M. Rocha, J. C. Silva-Filho, C. S. Teixeira, B. S. Cav K. S. Nascimento, I. L. B. Neto, R. B. Nobrega, C. S. Nagano, A. H. Sampai E. Holanda, R. B. Leal
Date :  25 Feb 14  (Deposition) - 15 Apr 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Lectin, Canavalia Brasiliensis, Adenine, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Delatorre, B. A. M. Rocha, J. C. Silva-Filho, C. S. Teixeira, B. S. Cavada, K. S. Nascimento, I. L. B. Neto, R. B. Nobrega, C. S. Nagano A. H. Sampaio, E. Holanda, R. B. Leal
Crystal Structure Of Canavalia Brasiliensis (Conbr) Complexed With Adenine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONCANAVALIN-BR
    Chains: A
    Organism Common: BRAZILIAN JACK BEAN
    Organism Scientific: CANAVALIA BRASILIENSIS
    Organism Taxid: 61861
    Synonym: CON BR

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 8)

Asymmetric Unit (6, 8)
No.NameCountTypeFull Name
1ADE1Ligand/IonADENINE
2CA1Ligand/IonCALCIUM ION
3DBB1Ligand/IonD-ALPHA-AMINOBUTYRIC ACID
4EDO2Ligand/Ion1,2-ETHANEDIOL
5GOL2Ligand/IonGLYCEROL
6MN1Ligand/IonMANGANESE (II) ION
Biological Unit 1 (4, 24)
No.NameCountTypeFull Name
1ADE4Ligand/IonADENINE
2CA-1Ligand/IonCALCIUM ION
3DBB4Ligand/IonD-ALPHA-AMINOBUTYRIC ACID
4EDO8Ligand/Ion1,2-ETHANEDIOL
5GOL8Ligand/IonGLYCEROL
6MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:415 , HOH A:427binding site for residue CA A 301
2AC2SOFTWAREGLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:411 , HOH A:422binding site for residue MN A 302
3AC3SOFTWARETYR A:12 , ASN A:14 , THR A:15 , ASP A:16 , THR A:150 , GLU A:151 , ARG A:228binding site for residue ADE A 303
4AC4SOFTWARETYR A:12 , ASN A:14 , GLY A:98 , LEU A:99 , TYR A:100 , ALA A:207 , ASP A:208 , GLY A:227 , ARG A:228binding site for residue GOL A 304
5AC5SOFTWARESER A:113 , ALA A:125 , MET A:129 , PHE A:130 , ASP A:139 , VAL A:179 , HIS A:180 , HOH A:420 , HOH A:423binding site for residue DBB A 305
6AC6SOFTWAREARG A:90 , TYR A:176 , HOH A:405binding site for residue EDO A 306
7AC7SOFTWAREGLY A:144 , HOH A:452binding site for residue EDO A 307
8AC8SOFTWARESER A:34 , LYS A:36 , THR A:37binding site for residue GOL A 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P14)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:118 -Ser A:119
2Ala A:207 -Asp A:208

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P14)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P14)

(-) Exons   (0, 0)

(no "Exon" information available for 4P14)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...hhhhh.....eeeeee......eeee.......eeeeeeeee....eeeeeee.....eeeeeee.hhhhh...eeeeeeeee........eeeeeeeeeeee.....eeeeeeee.........eeeee..ee.....ee..............eeeeee...ee.......eeeeeeeeeee..........eeeeeee..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p14 A   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILSWSFTSKLKSNSHETNALHFMFNQFSKDQKDLILQGDATTGTEGNLRLTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       110       121       131       141       151       161       171       181       191       201       211       221       231      
                                                                                                                                                119|                                                                                                                    
                                                                                                                                                 121
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P14)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P14)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P14)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:207 - Asp A:208   [ RasMol ]  
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  4p14
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  CONA_CANBR | P55915
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CONA_CANBR | P55915: 1azd 1c57 1dq0 1dq1 1dq2 1dq4 1dq5 1joj 1jui 1jyc 1jyi 1qdc 1qdo 2cyf 3ju9 4h55 4pcr

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4P14)