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(-) Description

Title :  THE NEUTRON STRUCTURE OF CONCANAVALIN A AT 2.2 ANGSTROMS
 
Authors :  H. U. Ahmed, M. P. Blakeley, M. Cianci, J. A. Hubbard, J. R. Helliwell
Date :  02 May 07  (Deposition) - 05 Feb 08  (Release) - 13 Jul 11  (Revision)
Method :  NEUTRON DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Protonation States, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. U. Ahmed, M. P. Blakeley, M. Cianci, D. W. Cruickshank, J. A. Hubbard J. R. Helliwell
The Determination Of Protonation States In Proteins.
Acta Crystallogr. , Sect. D V. 63 906 2007
PubMed-ID: 17642517  |  Reference-DOI: 10.1107/S0907444907029976

(-) Compounds

Molecule 1 - CONCANAVALIN A
    Chains: A
    Organism Common: JACK BEAN
    Organism Scientific: CANAVALIA ENSIFORMIS
    Organism Taxid: 3823
    Synonym: CON A

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 86)

Asymmetric Unit (3, 86)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2DOD84Ligand/Ion
3MN1Ligand/IonMANGANESE (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2DOD-1Ligand/Ion
3MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:8 , ASP A:10 , ASP A:19 , HIS A:24BINDING SITE FOR RESIDUE MN A 500
2AC2SOFTWAREASP A:10 , TYR A:12 , ASN A:14 , ASP A:19BINDING SITE FOR RESIDUE CA A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YZ4)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Thr A:120 -His A:121
2His A:121 -Glu A:122
3Ala A:207 -Asp A:208

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YZ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YZ4)

(-) Exons   (0, 0)

(no "Exon" information available for 2YZ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
 aligned with CONA_CANEN | P02866 from UniProtKB/Swiss-Prot  Length:290

    Alignment length:238
                                                                                                                      1                                                                                                                                                   
                                     -         -         -         -         -         -         -         -         -|       10        20        30        40        50        60        70        80        90       100       110       120       130       140        
           CONA_CANEN     - ------------------------------------------------------------------------------------------MAISKKSSLFLPIFTFITMFLMVVNKVSSSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 148
               SCOP domains d2yz4a_ A: Concanavalin A                                                                                                                                                                                                                      SCOP domains
               CATH domains 2yz4A00 A:1-237  [code=2.60.120.200, no name defined]                                                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------Lectin_legB-2yz4A01 A:124-237                                                                                      Pfam domains
         Sec.struct. author ...eeeeeee...hhhhh.....eeeeee......eeee.......eeeeeeeee....eeeeeee......eeeeee.hhhhh...eeeeeeeee........eeee-eeeeeeeee.....eeeeeeee.........eeeee..ee.....ee..............eeeeee...ee.....eeeeeeeeeeeee..........eeeeeee..........hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yz4 A   1 ADTIVAVELDTYPNTDIGDPSYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVDKRLSAVVSYPNADSATVSYDVDLDNVLPEWVRVGLSASTGLYKETNTILS-WSFTSKLKSNSTHETNALHFMFNQFSKDQKDLILQGDATTGTDGNLELTRVSSNGSPQGSSVGRALFYAPVHIWESSAVVASFEATFTFLIKSPDSHPADGIAFFISNIDSSIPSGSTGRLLGLFPDAN 237
                                    10        20        30        40        50        60        70        80        90       100       109       119       129       139       149       159       169       179       189       199       209       219       229        
                                                                                                                                     108 |                                                                                                                                
                                                                                                                                       109
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Concanavalin (293)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (CONA_CANEN | P02866)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0005537    mannose binding    Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CONA_CANEN | P02866: 1apn 1bxh 1c57 1ces 1cjp 1cn1 1con 1cvn 1dq0 1dq1 1dq2 1dq4 1dq5 1dq6 1enq 1enr 1ens 1gic 1gkb 1hqw 1i3h 1jbc 1jn2 1joj 1jui 1jw6 1jyc 1jyi 1nls 1nxd 1ona 1qgl 1qny 1scr 1scs 1tei 1val 1vam 1xqn 2cna 2ctv 2enr 2uu8 3cna 3d4k 3enr 3nwk 4p9w 4p9x 4p9y 4pf5 5cna

(-) Related Entries Specified in the PDB File

1c57 NEUTRON STRUCTURE OF CONCANAVALIN A AT 293K TO 2.5 ANGSTROMS
1nls ULTRA-HIGH RESOLUTION X-RAY STRUCTURE OF CONCANAVALIN A
1xqn THE 15K NEUTRON STRUCTURE OF CONCANAVALIN A