1JOD - JenaLib

Asymmetric Unit (3, 36)

No.	Name	Count	Type	Full Name
1	CAC	4	Ligand/Ion	CACODYLATE ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
3	ZN	22	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	CAC	3	Ligand/Ion	CACODYLATE ION
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	CAC	1	Ligand/Ion	CACODYLATE ION
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (2, 16)

No.	Name	Count	Type	Full Name
1	CAC	6	Ligand/Ion	CACODYLATE ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (2, 28)

No.	Name	Count	Type	Full Name
1	CAC	8	Ligand/Ion	CACODYLATE ION
2	MSE	20	Mod. Amino Acid	SELENOMETHIONINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (2, 8)

No.	Name	Count	Type	Full Name
1	CAC	3	Ligand/Ion	CACODYLATE ION
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (2, 14)

No.	Name	Count	Type	Full Name
1	CAC	4	Ligand/Ion	CACODYLATE ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 7 (2, 8)

No.	Name	Count	Type	Full Name
1	CAC	3	Ligand/Ion	CACODYLATE ION
2	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 8 (2, 16)

No.	Name	Count	Type	Full Name
1	CAC	6	Ligand/Ion	CACODYLATE ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
3	ZN	-1	Ligand/Ion	ZINC ION

Sites (23, 23)

Asymmetric Unit (23, 23)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:221 , HOH A:524	BINDING SITE FOR RESIDUE ZN A 301
02	AC2	SOFTWARE	GLU A:143 , LYS A:144 , ASN A:193	BINDING SITE FOR RESIDUE ZN A 302
03	AC3	SOFTWARE	ASP A:190 , CAC A:351 , ZN B:322 , GLU B:1247	BINDING SITE FOR RESIDUE ZN A 303
04	AC4	SOFTWARE	ASP A:118 , ASP A:120 , CAC A:351	BINDING SITE FOR RESIDUE ZN A 304
05	AC5	SOFTWARE	ASP A:216 , TRP A:217 , GLU A:219 , CAC B:353 , ASP B:1166 , HIS B:1167	BINDING SITE FOR RESIDUE ZN A 305
06	AC6	SOFTWARE	ASP B:1221	BINDING SITE FOR RESIDUE ZN B 306
07	AC7	SOFTWARE	MSE B:1125 , LYS B:1144 , LEU B:1145 , ILE B:1146	BINDING SITE FOR RESIDUE ZN B 307
08	AC8	SOFTWARE	ASP B:1201	BINDING SITE FOR RESIDUE ZN B 308
09	AC9	SOFTWARE	ASP B:1118 , ASP B:1120	BINDING SITE FOR RESIDUE ZN B 309
10	BC1	SOFTWARE	ASP A:166 , CAC A:352 , ASP B:1216 , TRP B:1217 , GLU B:1219	BINDING SITE FOR RESIDUE ZN B 310
11	BC2	SOFTWARE	ASP A:104 , PHE A:165 , CAC A:352 , GLU B:1219	BINDING SITE FOR RESIDUE ZN A 311
12	BC3	SOFTWARE	ASP A:201	BINDING SITE FOR RESIDUE ZN A 313
13	BC4	SOFTWARE	GLU A:247 , ZN A:315 , CAC A:354 , HOH A:522	BINDING SITE FOR RESIDUE ZN A 314
14	BC5	SOFTWARE	GLU A:247 , ZN A:314 , CAC A:354	BINDING SITE FOR RESIDUE ZN A 315
15	BC6	SOFTWARE	GLU A:227 , GLU B:1224	BINDING SITE FOR RESIDUE ZN A 318
16	BC7	SOFTWARE	GLU A:224 , GLU B:1224 , GLU B:1227	BINDING SITE FOR RESIDUE ZN A 319
17	BC8	SOFTWARE	GLU A:219 , CAC B:353 , ASP B:1104 , PHE B:1165 , ASP B:1166 , ASN B:1261	BINDING SITE FOR RESIDUE ZN B 320
18	BC9	SOFTWARE	CAC A:354 , HOH A:515	BINDING SITE FOR RESIDUE ZN A 321
19	CC1	SOFTWARE	ZN A:303 , CAC A:351 , GLU B:1247	BINDING SITE FOR RESIDUE ZN B 322
20	CC2	SOFTWARE	ASP A:120 , LEU A:121 , GLN A:124 , PRO A:189 , ASP A:190 , ZN A:303 , ZN A:304 , ZN B:322 , GLU B:1247	BINDING SITE FOR RESIDUE CAC A 351
21	CC3	SOFTWARE	ASP A:104 , GLN A:164 , ASP A:166 , ASN A:261 , ZN A:311 , HOH A:530 , ZN B:310 , TRP B:1207 , ASP B:1216 , TRP B:1217 , ASN B:1218 , GLU B:1219	BINDING SITE FOR RESIDUE CAC A 352
22	CC4	SOFTWARE	TRP A:207 , ASP A:216 , TRP A:217 , ASN A:218 , GLU A:219 , ZN A:305 , HOH A:503 , ZN B:320 , ASP B:1104 , GLY B:1105 , ASP B:1166 , ASN B:1261	BINDING SITE FOR RESIDUE CAC B 353
23	CC5	SOFTWARE	GLU A:247 , ZN A:314 , ZN A:315 , ZN A:321	BINDING SITE FOR RESIDUE CAC A 354

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:160
 aligned with OMP_MOUSE | Q64288 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:160
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163
           OMP_MOUSE      4 DGPQKQQLEMPLVLDQDLTQQMRLRVESLKQRGEKKQDGEKLIRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPAAIFWRKEDSDAMDWNEADALEFGERLSDLAKIRKVMYFLITFGEGVEPANLKASVVFNQL  163
               SCOP domains d1joda_ A: Olfactory marker protein                                                                                                                              SCOP domains
               CATH domains 1jodA00 A:104-263  [code=2.60.120.390, no name defined]                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeehhhhhhhhhhhhhhhhhhh.............eeeeeee..........eeeeee...eeeeee..............hhh.....eeeee......eeehhhhhhhhhhhhhhhhhhh.eeeeeeee....hhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1jod A  104 DGPQKQQLEmPLVLDQDLTQQmRLRVESLKQRGEKKQDGEKLIRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVTITGTSQNWTPDLTNLmTRQLLDPAAIFWRKEDSDAmDWNEADALEFGERLSDLAKIRKVmYFLITFGEGVEPANLKASVVFNQL  263
                                   113       123 |     133       143       153       163       173       183       193 |     203       213 |     223       233     | 243       253       263
                                   113-MSE     125-MSE                                                               195-MSE             215-MSE                 239-MSE

Chain B from PDB  Type:PROTEIN  Length:160
 aligned with OMP_MOUSE | Q64288 from UniProtKB/Swiss-Prot  Length:163

    Alignment length:160
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163
           OMP_MOUSE      4 DGPQKQQLEMPLVLDQDLTQQMRLRVESLKQRGEKKQDGEKLIRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPAAIFWRKEDSDAMDWNEADALEFGERLSDLAKIRKVMYFLITFGEGVEPANLKASVVFNQL  163
               SCOP domains d1jodb_ B: Olfactory marker protein                                                                                                                              SCOP domains
               CATH domains 1jodB00 B:1104-1263  [code=2.60.120.390, no name defined]                                                                                                        CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.eehhhhhhhhhhhhhhhhhhh.............eeeeeee..........eeeeee...eeeeee......................eeeee......eeehhhhhhhhhhhhhhhhhhh.eeeeeeee....hhh.eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1jod B 1104 DGPQKQQLEmPLVLDQDLTQQmRLRVESLKQRGEKKQDGEKLIRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVTITGTSQNWTPDLTNLmTRQLLDPAAIFWRKEDSDAmDWNEADALEFGERLSDLAKIRKVmYFLITFGEGVEPANLKASVVFNQL 1263
                                  1113      1123 |    1133      1143      1153      1163      1173      1183      1193 |    1203      1213 |    1223      1233     |1243      1253      1263
                                  1113-MSE    1125-MSE                                                              1195-MSE            1215-MSE                1239-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

Asymmetric Unit(hide GO term definitions)

Chain A,B (OMP_MOUSE | Q64288)

molecular function
	GO:0004871	signal transducer activity	Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
	GO:0007268	chemical synaptic transmission	The vesicular release of classical neurotransmitter molecules from a presynapse, across a chemical synapse, the subsequent activation of neurotransmitter receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse.
	GO:0022008	neurogenesis	Generation of cells within the nervous system.
	GO:0050896	response to stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
	GO:0007608	sensory perception of smell	The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0030424	axon	The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0043025	neuronal cell body	The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	1jod
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 36)