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1JOD
Biol. Unit 3
Info
Asym.Unit (63 KB)
Biol.Unit 1 (30 KB)
Biol.Unit 2 (30 KB)
Biol.Unit 3 (110 KB)
Biol.Unit 4 (110 KB)
Biol.Unit 5 (56 KB)
Biol.Unit 6 (56 KB)
Biol.Unit 7 (57 KB)
Biol.Unit 8 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MURINE OLFACTORY MARKER PROTEIN IN SPACEGROUP P43212
Authors
:
P. Smith, J. F. Hunt
Date
:
27 Jul 01 (Deposition) - 22 Aug 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Biol. Unit 4: A,B (2x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: A,B (1x)
Biol. Unit 7: A,B (1x)
Biol. Unit 8: A (2x)
Keywords
:
Beta Clamshell, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. C. Smith, S. Firestein, J. F. Hunt
The Crystal Structure Of The Olfactory Marker Protein At 2. A Resolution.
J. Mol. Biol. V. 319 807 2002
[
close entry info
]
Hetero Components
(2, 16)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
1b: CACODYLATE ION (CACb)
1c: CACODYLATE ION (CACc)
1d: CACODYLATE ION (CACd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
3o: ZINC ION (ZNo)
3p: ZINC ION (ZNp)
3q: ZINC ION (ZNq)
3r: ZINC ION (ZNr)
3s: ZINC ION (ZNs)
3t: ZINC ION (ZNt)
3u: ZINC ION (ZNu)
3v: ZINC ION (ZNv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAC
6
Ligand/Ion
CACODYLATE ION
2
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:221 , HOH A:524
BINDING SITE FOR RESIDUE ZN A 301
02
AC2
SOFTWARE
GLU A:143 , LYS A:144 , ASN A:193
BINDING SITE FOR RESIDUE ZN A 302
03
AC3
SOFTWARE
ASP A:190 , CAC A:351 , ZN B:322 , GLU B:1247
BINDING SITE FOR RESIDUE ZN A 303
04
AC4
SOFTWARE
ASP A:118 , ASP A:120 , CAC A:351
BINDING SITE FOR RESIDUE ZN A 304
05
AC5
SOFTWARE
ASP A:216 , TRP A:217 , GLU A:219 , CAC B:353 , ASP B:1166 , HIS B:1167
BINDING SITE FOR RESIDUE ZN A 305
06
AC6
SOFTWARE
ASP B:1221
BINDING SITE FOR RESIDUE ZN B 306
07
AC7
SOFTWARE
MSE B:1125 , LYS B:1144 , LEU B:1145 , ILE B:1146
BINDING SITE FOR RESIDUE ZN B 307
08
AC8
SOFTWARE
ASP B:1201
BINDING SITE FOR RESIDUE ZN B 308
09
AC9
SOFTWARE
ASP B:1118 , ASP B:1120
BINDING SITE FOR RESIDUE ZN B 309
10
BC1
SOFTWARE
ASP A:166 , CAC A:352 , ASP B:1216 , TRP B:1217 , GLU B:1219
BINDING SITE FOR RESIDUE ZN B 310
11
BC2
SOFTWARE
ASP A:104 , PHE A:165 , CAC A:352 , GLU B:1219
BINDING SITE FOR RESIDUE ZN A 311
12
BC3
SOFTWARE
ASP A:201
BINDING SITE FOR RESIDUE ZN A 313
13
BC4
SOFTWARE
GLU A:247 , ZN A:315 , CAC A:354 , HOH A:522
BINDING SITE FOR RESIDUE ZN A 314
14
BC5
SOFTWARE
GLU A:247 , ZN A:314 , CAC A:354
BINDING SITE FOR RESIDUE ZN A 315
15
BC6
SOFTWARE
GLU A:227 , GLU B:1224
BINDING SITE FOR RESIDUE ZN A 318
16
BC7
SOFTWARE
GLU A:224 , GLU B:1224 , GLU B:1227
BINDING SITE FOR RESIDUE ZN A 319
17
BC8
SOFTWARE
GLU A:219 , CAC B:353 , ASP B:1104 , PHE B:1165 , ASP B:1166 , ASN B:1261
BINDING SITE FOR RESIDUE ZN B 320
18
BC9
SOFTWARE
CAC A:354 , HOH A:515
BINDING SITE FOR RESIDUE ZN A 321
19
CC1
SOFTWARE
ZN A:303 , CAC A:351 , GLU B:1247
BINDING SITE FOR RESIDUE ZN B 322
20
CC2
SOFTWARE
ASP A:120 , LEU A:121 , GLN A:124 , PRO A:189 , ASP A:190 , ZN A:303 , ZN A:304 , ZN B:322 , GLU B:1247
BINDING SITE FOR RESIDUE CAC A 351
21
CC3
SOFTWARE
ASP A:104 , GLN A:164 , ASP A:166 , ASN A:261 , ZN A:311 , HOH A:530 , ZN B:310 , TRP B:1207 , ASP B:1216 , TRP B:1217 , ASN B:1218 , GLU B:1219
BINDING SITE FOR RESIDUE CAC A 352
22
CC4
SOFTWARE
TRP A:207 , ASP A:216 , TRP A:217 , ASN A:218 , GLU A:219 , ZN A:305 , HOH A:503 , ZN B:320 , ASP B:1104 , GLY B:1105 , ASP B:1166 , ASN B:1261
BINDING SITE FOR RESIDUE CAC B 353
23
CC5
SOFTWARE
GLU A:247 , ZN A:314 , ZN A:315 , ZN A:321
BINDING SITE FOR RESIDUE CAC A 354
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1joda_ (A:)
1b: SCOP_d1jodb_ (B:)
View:
Select:
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Classes
(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Olfactory marker protein
(5)
Superfamily
:
Olfactory marker protein
(5)
Family
:
Olfactory marker protein
(5)
Protein domain
:
Olfactory marker protein
(5)
Mouse (Mus musculus) [TaxId: 10090]
(3)
1a
d1joda_
A:
1b
d1jodb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1jodA00 (A:104-263)
1b: CATH_1jodB00 (B:1104-1263)
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Classes
(
)
(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.390, no name defined]
(5)
House mouse (Mus musculus)
(3)
1a
1jodA00
A:104-263
1b
1jodB00
B:1104-1263
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
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Sidechain
Hetero
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (63 KB)
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Biol.Unit 3 (110 KB)
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Biol.Unit 4 (110 KB)
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Biol.Unit 5 (56 KB)
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Biol.Unit 6 (56 KB)
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Biol.Unit 7 (57 KB)
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Biol.Unit 8 (57 KB)
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