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(-) Description

Title :  CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29
 
Authors :  A. A. Simpson, P. G. Leiman, Y. Tao, Y. He, M. O. Badasso, P. J. Jardine, D. L. Anderson, M. G. Rossmann
Date :  23 Jul 01  (Deposition) - 15 Aug 01  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Helix Bundle, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Simpson, P. G. Leiman, Y. Tao, Y. He, M. O. Badasso, P. J. Jardine, D. L. Anderson, M. G. Rossmann
Structure Determination Of The Head-Tail Connector Of Bacteriophage Phi29.
Acta Crystallogr. , Sect. D V. 57 1260 2001
PubMed-ID: 11526317  |  Reference-DOI: 10.1107/S0907444901010435
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPPER COLLAR PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPC28D1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 10
    Organism Scientific: BACILLUS PHAGE PHI29
    Organism Taxid: 10756
    Synonym: CONNECTOR PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1JNB)

(-) Sites  (0, 0)

(no "Site" information available for 1JNB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JNB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JNB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JNB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1JNB)

(-) Exons   (0, 0)

(no "Exon" information available for 1JNB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnba_ A: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbA01               ----------------------------------------------------------------------------------------------1jnbA01                     1jnbA03 A:158-202                            1jnbA01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb A  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain B from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbb_ B: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbB01               ----------------------------------------------------------------------------------------------1jnbB01                     1jnbB03 B:158-202                            1jnbB01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb B  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain C from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbc_ C: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbC01               ----------------------------------------------------------------------------------------------1jnbC01                     1jnbC03 C:158-202                            1jnbC01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb C  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain D from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbd_ D: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbD01               ----------------------------------------------------------------------------------------------1jnbD01                     1jnbD03 D:158-202                            1jnbD01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb D  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain E from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbe_ E: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbE01               ----------------------------------------------------------------------------------------------1jnbE01                     1jnbE03 E:158-202                            1jnbE01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb E  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain F from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbf_ F: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbF01               ----------------------------------------------------------------------------------------------1jnbF01                     1jnbF03 F:158-202                            1jnbF01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb F  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain G from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbg_ G: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbG01               ----------------------------------------------------------------------------------------------1jnbG01                     1jnbG03 G:158-202                            1jnbG01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb G  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain H from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbh_ H: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbH01               ----------------------------------------------------------------------------------------------1jnbH01                     1jnbH03 H:158-202                            1jnbH01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb H  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain I from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbi_ I: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbI01               ----------------------------------------------------------------------------------------------1jnbI01                     1jnbI03 I:158-202                            1jnbI01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb I  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain J from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbj_ J: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbJ01               ----------------------------------------------------------------------------------------------1jnbJ01                     1jnbJ03 J:158-202                            1jnbJ01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb J  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain K from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbk_ K: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbK01               ----------------------------------------------------------------------------------------------1jnbK01                     1jnbK03 K:158-202                            1jnbK01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb K  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain L from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1jnbl_ L: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1jnbL01               ----------------------------------------------------------------------------------------------1jnbL01                     1jnbL03 L:158-202                            1jnbL01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee....................ee..........eeee......hhhhhhhhhhhhhhhhhhhhh..------------------hhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jnb L  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (2, 24)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Crambin (36)
(-)
Homologous Superfamily: Bacteriophage PHI-29 conector. Domain 3 (4)
(-)
Bacillus phage phi29. Organism_taxid: 10756. (2)
1a1jnbA03A:158-202
1b1jnbB03B:158-202
1c1jnbC03C:158-202
1d1jnbD03D:158-202
1e1jnbE03E:158-202
1f1jnbF03F:158-202
1g1jnbG03G:158-202
1h1jnbH03H:158-202
1i1jnbI03I:158-202
1j1jnbJ03J:158-202
1k1jnbK03K:158-202
1l1jnbL03L:158-202
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Orthogonal Bundle (10391)
(-)
Topology: Serum Albumin; Chain A, Domain 1 (74)
(-)
Homologous Superfamily: [code=1.10.246.30, no name defined] (4)
(-)
Bacillus phage phi29. Organism_taxid: 10756. (2)
2a1jnbA01A:14-35,A:130-157,A:203-226
2b1jnbB01B:14-35,B:130-157,B:203-226
2c1jnbC01C:14-35,C:130-157,C:203-226
2d1jnbD01D:14-35,D:130-157,D:203-226
2e1jnbE01E:14-35,E:130-157,E:203-226
2f1jnbF01F:14-35,F:130-157,F:203-226
2g1jnbG01G:14-35,G:130-157,G:203-226
2h1jnbH01H:14-35,H:130-157,H:203-226
2i1jnbI01I:14-35,I:130-157,I:203-226
2j1jnbJ01J:14-35,J:130-157,J:203-226
2k1jnbK01K:14-35,K:130-157,K:203-226
2l1jnbL01L:14-35,L:130-157,L:203-226

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1JNB)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (PORTL_BPPH2 | P04332)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0019073    viral DNA genome packaging    The packing of viral DNA into a capsid.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0046798    viral portal complex    A multimeric ring of proteins through which the DNA enters and exits the viral capsid.
    GO:0046729    viral procapsid    A stable empty viral capsid produced during the assembly of viruses.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  1jnb
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  PORTL_BPPH2 | P04332
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PORTL_BPPH2 | P04332: 1fou 1h5w 1ijg 1l4p 1vri 1vrj 1ywe

(-) Related Entries Specified in the PDB File

1fou PRELIMINARY STRUCTURE
1ijg STRUCTURE OF DIFFERENT CRYSTAL