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(-) Description

Title :  CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29
 
Authors :  A. A. Simpson, Y. Tao, P. G. Leiman, M. O. Badasso, Y. He, P. J. Jardine, N. H. Olson, M. C. Morais, S. N. Grimes, D. L. Anderson, T. S. Baker, M. G. Rossmann
Date :  28 Aug 00  (Deposition) - 22 Dec 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Alpha-Helical Barrel, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Simpson, Y. Tao, P. G. Leiman, M. O. Badasso, Y. He, P. J. Jardine, N. H. Olson, M. C. Morais, S. Grimes, D. L. Anderson, T. S. Baker, M. G. Rossmann
Structure Of The Bacteriophage Phi29 Dna Packaging Motor.
Nature V. 408 745 2000
PubMed-ID: 11130079  |  Reference-DOI: 10.1038/35047129
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPPER COLLAR PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: BACILLUS SUBTILIS
    Expression System Plasmid: PPC28D1
    Expression System Taxid: 1423
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS PHAGE PHI29
    Organism Taxid: 10756
    Synonym: GP 10, CONNECTOR PROTEIN, LATE PROTEIN GP10, P10 CONNECTOR PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1FOU)

(-) Sites  (0, 0)

(no "Site" information available for 1FOU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FOU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FOU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FOU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FOU)

(-) Exons   (0, 0)

(no "Exon" information available for 1FOU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1foua_ A: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouA01               ----------------------------------------------------------------------------------------------1fouA01                     1fouA03 A:158-202                            1fouA01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh....eeeee...eeeee..........................................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhhhh.....eeee........eeee......hhhhhhhhhhhhhhhhhhhh------...------------..hhhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou A  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain B from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1foub_ B: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouB01               ----------------------------------------------------------------------------------------------1fouB01                     1fouB03 B:158-202                            1fouB01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee...ee..........ee..........ee.............ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.........hhhhhh.....eeee........eeee......hhhhhhhhhhhhhhhhhhhh------...------------.........hhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou B  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain C from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1fouc_ C: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouC01               ----------------------------------------------------------------------------------------------1fouC01                     1fouC03 C:158-202                            1fouC01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh....eee.......eee.eeee..........eeee........ee.............ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee......................eeee..........ee......hhhhhhhhhhhhhhhhhhh.------...------------hhhhhhhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou C  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain D from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1foud_ D: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouD01               ----------------------------------------------------------------------------------------------1fouD01                     1fouD03 D:158-202                            1fouD01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeeee...eeeee...ee..........ee....................................hhhhhhhhhhhhhhhhhhhhhhhhhh....ee......................ee............ee......hhhhhhhhhhhhhhhhhhh.------...------------..hhhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou D  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain E from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1foue_ E: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouE01               ----------------------------------------------------------------------------------------------1fouE01                     1fouE03 E:158-202                            1fouE01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhh....................ee..........ee...................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee............hhhhh.....ee............ee......hhhhhhhhhhhhhhhhhhh.------...------------....hhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou E  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain F from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1fouf_ F: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouF01               ----------------------------------------------------------------------------------------------1fouF01                     1fouF03 F:158-202                            1fouF01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh....ee.........ee..........................................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee....................ee...........eee......hhhhhhhhhhhhhhhhhhh.------...------------hhhhhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou F  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain G from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1foug_ G: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouG01               ----------------------------------------------------------------------------------------------1fouG01                     1fouG03 G:158-202                            1fouG01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.....ee.......ee.....eeee.....eee.....................................hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee.........hhhhhh.....eeee....hhh.eeee......hhhhhhhhhhhhhhhhhhhh------...------------.hhhhhhhhhhhhhhhh..hhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou G  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain H from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1fouh_ H: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouH01               ----------------------------------------------------------------------------------------------1fouH01                     1fouH03 H:158-202                            1fouH01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhh.....................................................................hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee......hhhhhh........eeee....hhh.eeee......hhhhhhhhhhhhhhhhhhhh------...------------.hhhhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou H  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain I from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1foui_ I: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouI01               ----------------------------------------------------------------------------------------------1fouI01                     1fouI03 I:158-202                            1fouI01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhh....eee.......eee................ee........ee..............ee.........hhhhhhhhhhhhhhhhhhhhhhhhh.....eeee........hhhhhhh.....eeee........eeee......hhhhhhhhhhhhhhhhhhh.------...------------hhhhhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou I  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain J from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1fouj_ J: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouJ01               ----------------------------------------------------------------------------------------------1fouJ01                     1fouJ03 J:158-202                            1fouJ01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhh....eee.......eee.eeee..........eeee.......................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.........hhhhh......eeee........eeee......hhhhhhhhhhhhhhhhhhh.------...------------hhhhhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou J  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain K from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1fouk_ K: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouK01               ----------------------------------------------------------------------------------------------1fouK01                     1fouK03 K:158-202                            1fouK01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eee.......eee..........................................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee....................ee............ee......hhhhhhhhhhhhhhhhhh..------...------------hhhhhhhhhhhhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou K  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228                                                   


Chain L from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1foul_ L: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1fouL01               ----------------------------------------------------------------------------------------------1fouL01                     1fouL03 L:158-202                            1fouL01                       ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eee.......eee..........................................ee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhhhh.....eeee........eeee......hhhhhhhhhhhhhhhhhhh.------...------------..hhhhhhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fou L  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFK------LQT------------DEQIDSSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220    |    - | |     -      |250       260       270       280     
                                                                                                                                                                                                                                                225    226 |          247                                      
                                                                                                                                                                                                                                                         228
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (2, 24)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Crambin (36)
(-)
Homologous Superfamily: Bacteriophage PHI-29 conector. Domain 3 (4)
(-)
Bacillus phage phi29. Organism_taxid: 10756. (1)
1a1fouA03A:158-202
1b1fouB03B:158-202
1c1fouK03K:158-202
1d1fouL03L:158-202
1e1fouC03C:158-202
1f1fouD03D:158-202
1g1fouE03E:158-202
1h1fouF03F:158-202
1i1fouG03G:158-202
1j1fouH03H:158-202
1k1fouI03I:158-202
1l1fouJ03J:158-202
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Orthogonal Bundle (10391)
(-)
Topology: Serum Albumin; Chain A, Domain 1 (74)
(-)
Homologous Superfamily: [code=1.10.246.30, no name defined] (4)
(-)
Bacillus phage phi29. Organism_taxid: 10756. (1)
2a1fouA01A:14-35,A:130-157,A:203-226
2b1fouB01B:14-35,B:130-157,B:203-226
2c1fouK01K:14-35,K:130-157,K:203-226
2d1fouL01L:14-35,L:130-157,L:203-226
2e1fouC01C:14-35,C:130-157,C:203-226
2f1fouD01D:14-35,D:130-157,D:203-226
2g1fouE01E:14-35,E:130-157,E:203-226
2h1fouF01F:14-35,F:130-157,F:203-226
2i1fouG01G:14-35,G:130-157,G:203-226
2j1fouH01H:14-35,H:130-157,H:203-226
2k1fouI01I:14-35,I:130-157,I:203-226
2l1fouJ01J:14-35,J:130-157,J:203-226

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FOU)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (PORTL_BPPH2 | P04332)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0019073    viral DNA genome packaging    The packing of viral DNA into a capsid.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0046798    viral portal complex    A multimeric ring of proteins through which the DNA enters and exits the viral capsid.
    GO:0046729    viral procapsid    A stable empty viral capsid produced during the assembly of viruses.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  1fou
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  PORTL_BPPH2 | P04332
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PORTL_BPPH2 | P04332: 1h5w 1ijg 1jnb 1l4p 1vri 1vrj 1ywe

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1FOU)