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(-) Description

Title :  STRUCTURE OF THE BACTERIOPHAGE PHI29 HEAD-TAIL CONNECTOR PROTEIN
 
Authors :  A. A. Simpson, P. G. Leiman, Y. Tao, Y. He, M. Badasso, P. J. Jardine, D. L. Anderson, M. G. Rossmann
Date :  26 Apr 01  (Deposition) - 09 May 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Alpha-Helical Bundle, Rna Binding Motif, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Simpson, P. G. Leiman, Y. Tao, Y. He, M. O. Badasso, P. J. Jardine, D. L. Anderson, M. G. Rossmann
Structure Determination Of The Head-Tail Connector Of Bacteriophage Phi29.
Acta Crystallogr. , Sect. D V. 57 1260 2001
PubMed-ID: 11526317  |  Reference-DOI: 10.1107/S0907444901010435
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPPER COLLAR PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: 10
    Organism Scientific: BACILLUS PHAGE PHI29
    Organism Taxid: 10756
    Synonym: CONNECTOR PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1IJG)

(-) Sites  (0, 0)

(no "Site" information available for 1IJG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1IJG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1IJG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1IJG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1IJG)

(-) Exons   (0, 0)

(no "Exon" information available for 1IJG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijga_ A: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgA01               ----------------------------------------------------------------------------------------------1ijgA01                     1ijgA03 A:158-202                            1ijgA01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg A  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain B from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgb_ B: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgB01               ----------------------------------------------------------------------------------------------1ijgB01                     1ijgB03 B:158-202                            1ijgB01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg B  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain C from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgc_ C: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgC01               ----------------------------------------------------------------------------------------------1ijgC01                     1ijgC03 C:158-202                            1ijgC01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg C  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain D from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgd_ D: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgD01               ----------------------------------------------------------------------------------------------1ijgD01                     1ijgD03 D:158-202                            1ijgD01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg D  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain E from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijge_ E: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgE01               ----------------------------------------------------------------------------------------------1ijgE01                     1ijgE03 E:158-202                            1ijgE01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg E  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain F from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgf_ F: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgF01               ----------------------------------------------------------------------------------------------1ijgF01                     1ijgF03 F:158-202                            1ijgF01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg F  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain G from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgg_ G: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgG01               ----------------------------------------------------------------------------------------------1ijgG01                     1ijgG03 G:158-202                            1ijgG01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg G  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain H from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgh_ H: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgH01               ----------------------------------------------------------------------------------------------1ijgH01                     1ijgH03 H:158-202                            1ijgH01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg H  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain I from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgi_ I: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgI01               ----------------------------------------------------------------------------------------------1ijgI01                     1ijgI03 I:158-202                            1ijgI01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..hhhhh...eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg I  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain J from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgj_ J: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgJ01               ----------------------------------------------------------------------------------------------1ijgJ01                     1ijgJ03 J:158-202                            1ijgJ01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg J  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain K from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgk_ K: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgK01               ----------------------------------------------------------------------------------------------1ijgK01                     1ijgK03 K:158-202                            1ijgK01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..........eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg K  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247                                      


Chain L from PDB  Type:PROTEIN  Length:257
 aligned with PORTL_BPPH2 | P04332 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:275
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280     
          PORTL_BPPH2    11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIKNANLEKKERMVTDEVSSNDEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
               SCOP domains d1ijgl_ L: Upper collar protein gp10 (connector protein)                                                                                                                                                                                                                            SCOP domains
               CATH domains ---1ijgL01               ----------------------------------------------------------------------------------------------1ijgL01                     1ijgL03 L:158-202                            1ijgL01                 ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhheeee......hhhhhhhhhhhhheeeeeee...eeeee.eeee..........eeeee....eeeeee..hhhhh...eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhh.....eeee........eeeee.....hhhhhhhhhhhhhhhhhhhh...------------------hhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ijg L  11 SINEIQRQKRNRWFIHYLNYLQSLAYQLFEWENLPPTINPSFLEKSIHQFGYVGFYKDPVISYIACNGALSGQRDVYNQATVFRAASPVYQKEFKLYNYRDMKEEDMGVVIYNNDMAFPTTPTLELFAAELAELKEIISVNQNAQKTPVLIRANDNNQLSLKQVYNQYEGNAPVIFAHEALDSDSIEVFKTDAPYVVDKLNAQKNAVWNEMMTFLGIK------------------DEQIESSGTVFLKSREEACEKINELYGLNVKVKFRYDIV 285
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       | -         -      |250       260       270       280     
                                                                                                                                                                                                                                                   228                247
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (2, 24)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Crambin (36)
(-)
Homologous Superfamily: Bacteriophage PHI-29 conector. Domain 3 (4)
(-)
Bacillus phage phi29. Organism_taxid: 10756. (2)
1a1ijgA03A:158-202
1b1ijgB03B:158-202
1c1ijgK03K:158-202
1d1ijgL03L:158-202
1e1ijgC03C:158-202
1f1ijgD03D:158-202
1g1ijgE03E:158-202
1h1ijgF03F:158-202
1i1ijgG03G:158-202
1j1ijgH03H:158-202
1k1ijgI03I:158-202
1l1ijgJ03J:158-202
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Orthogonal Bundle (10391)
(-)
Topology: Serum Albumin; Chain A, Domain 1 (74)
(-)
Homologous Superfamily: [code=1.10.246.30, no name defined] (4)
(-)
Bacillus phage phi29. Organism_taxid: 10756. (2)
2a1ijgA01A:14-35,A:130-157,A:203-226
2b1ijgB01B:14-35,B:130-157,B:203-226
2c1ijgK01K:14-35,K:130-157,K:203-226
2d1ijgL01L:14-35,L:130-157,L:203-226
2e1ijgC01C:14-35,C:130-157,C:203-226
2f1ijgD01D:14-35,D:130-157,D:203-226
2g1ijgE01E:14-35,E:130-157,E:203-226
2h1ijgF01F:14-35,F:130-157,F:203-226
2i1ijgG01G:14-35,G:130-157,G:203-226
2j1ijgH01H:14-35,H:130-157,H:203-226
2k1ijgI01I:14-35,I:130-157,I:203-226
2l1ijgJ01J:14-35,J:130-157,J:203-226

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1IJG)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (PORTL_BPPH2 | P04332)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0019073    viral DNA genome packaging    The packing of viral DNA into a capsid.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0046798    viral portal complex    A multimeric ring of proteins through which the DNA enters and exits the viral capsid.
    GO:0046729    viral procapsid    A stable empty viral capsid produced during the assembly of viruses.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  1ijg
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PORTL_BPPH2 | P04332: 1fou 1h5w 1jnb 1l4p 1vri 1vrj 1ywe

(-) Related Entries Specified in the PDB File

1foq PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA
1fou CONNECTOR PROTEIN FROM BACTERIOPHAGE PHI29