Chain A from PDB Type:PROTEIN Length:182
aligned with HA21_MOUSE | P01904 from UniProtKB/Swiss-Prot Length:255
Alignment length:182
35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205
HA21_MOUSE 26 IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEE 207
SCOP domains d1ieaa2 A:1-81 Class II MHC alpha chain, N-terminal domain d1ieaa1 A:82-182 Class II MHC alpha chain, C-terminal domain SCOP domains
CATH domains --1ieaA01 A:3-81 1ieaA02 A:82-181 Immunoglobulins - CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeeeeeee...eeeeeeee..eeeeeee....eeee..hhhhh.....hhhhhhhhhhhhhhhhhhhhh...........eeeeee........eeeeeeeee.......eeeeee........eee............eeeeeeee.....eeeeeee.......eeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1iea A 1 IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEE 182
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
Chain B from PDB Type:PROTEIN Length:214
aligned with Q31163_MOUSE | Q31163 from UniProtKB/TrEMBL Length:263
Alignment length:214
17 18
14 | |20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
Q31163_MOUSE 5 RVPCVAAVILLLT----VLSPPVALVRDSRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEW 214
SCOP domains -----------------------------d1ieab2 B:4-92 Class II MHC beta chain, N-terminal domain d1ieab1 B:93-188 Class II MHC beta chain, C-terminal domain SCOP domains
CATH domains -------------------------------1ieaB01 B:6-93 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 1ieaB02 B:94-188 Immunoglobulins CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ................eee.............eeeeeeeeeee......eeeeeeeee..eeeeeee....eeee..hhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhh.........eeeeeee........eeeeeeeeee....eeeeeee........eee..........eeeeeeeee.......eeeeeee......eeeee Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1iea B 5N GKKVITAFNEGLKGGGGSLVGGGSGGGGSRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEW 188
||||||||6P||||||||7L|||||||||4 14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184
5N|||||||6P|||||||6L||||||15L||
6N|||||||7P|||||||7L||||||16L|
7N|||||| 8P|||||| 8L|||||| 4
8N||||| 9P||||| 9L|||||
1P|||| 1L|||| 10L||||
2P||| 2L||| 11L|||
3P|| 3L|| 12L||
4P| 4L| 13L|
5P 5L 14L
Chain C from PDB Type:PROTEIN Length:182
aligned with HA21_MOUSE | P01904 from UniProtKB/Swiss-Prot Length:255
Alignment length:182
35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205
HA21_MOUSE 26 IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEE 207
SCOP domains d1ieac2 C:1-81 Class II MHC alpha chain, N-terminal domain d1ieac1 C:82-182 Class II MHC alpha chain, C-terminal domain SCOP domains
CATH domains --1ieaC01 C:3-81 1ieaC02 C:82-181 Immunoglobulins - CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeeeeeee...eeeeeeee..eeeeeee....eeee..hhhhh.eee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee........eeeeeeeee.......eeeeee........eee............eeeeeeee.....eeeeeee.......eeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1iea C 1 IKEEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKTWEFEE 182
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
Chain D from PDB Type:PROTEIN Length:214
aligned with Q31163_MOUSE | Q31163 from UniProtKB/TrEMBL Length:263
Alignment length:214
17 18
14 | |20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
Q31163_MOUSE 5 RVPCVAAVILLLT----VLSPPVALVRDSRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEW 214
SCOP domains -----------------------------d1iead2 D:4-92 Class II MHC beta chain, N-terminal domain d1iead1 D:93-188 Class II MHC beta chain, C-terminal domain SCOP domains
CATH domains -------------------------------1ieaD01 D:6-93 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 1ieaD02 D:94-188 Immunoglobulins CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eee...........................eeeeeeeeeee......eeeeeeeee..eeeeeee....eeee..hhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhh.........eeeeeee........eeeeeeee......eeeeeee..eee...eee............eeeeeee.......eeeeeee......eeeee Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1iea D 5N GKKVITAFNEGLKGGGGSLVGGGSGGGGSRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEW 188
||||||||6P||||||||7L|||||||||4 14 24 34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184
5N|||||||6P|||||||6L||||||15L||
6N|||||||7P|||||||7L||||||16L|
7N|||||| 8P|||||| 8L|||||| 4
8N||||| 9P||||| 9L|||||
1P|||| 1L|||| 10L||||
2P||| 2L||| 11L|||
3P|| 3L|| 12L||
4P| 4L| 13L|
5P 5L 14L
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |