Chain A from PDB Type:PROTEIN Length:179
aligned with HA22_MOUSE | P04224 from UniProtKB/Swiss-Prot Length:255
Alignment length:179
37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197
HA22_MOUSE 28 EEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKHWEFE 206
SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -MHC_II_alpha-3qiwA02 A:4-84 --------C1-set-3qiwA01 A:93-175 ------ Pfam domains
Sec.struct. author ..eeeeeeeeeee...eeeeeeee..eeeeeee....eeee.hhhhhh.ee.hhhhhhhhhhhhhhhhhhhhhhh..........eeeeee.........eeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeee.......eeeeee.......eeeee... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC -------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3qiw A 3 EEHTIIQAEFYLLPDKRGEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKHWEFE 181
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172
Chain B from PDB Type:PROTEIN Length:165
aligned with HB21_MOUSE | P04230 from UniProtKB/Swiss-Prot Length:264
Alignment length:184
39 49 59 69 79 89 99 109 119 129 139 149 159 169 179 189 199 209
HB21_MOUSE 30 SRPWFLEYCKSECHFYNGTQRVRLLERYFYNLEENLRFDSDVGEFHAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEISDKFLVRRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTV 213
SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------MHC_II_beta-3qiwB02 B:13-87 ---------------C1 -set-3qiwB01 B:103- 185 - Pfam domains
Sec.struct. author ....eeeeeeeeeee......eeeeeeeee..eeeeeee.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee..---------.eeeeeeee.....eeeee---......eee...ee.....eeeeeee..-------.eeeee.......ee. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC --------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3qiw B 3 SRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPT---------LLVCSVSDFYPGNIEVRWF---KEEKTGIVSTGLVRNGDWTFQTLVMLET-------YTCQVEHPSLTDPVTV 186
12 22 32 42 52 62 72 82 92 102 | - | 122 132 | 142 152 162| 172 182
104 114 132 136 163 171
Chain B from PDB Type:PROTEIN Length:165
aligned with Q31163_MOUSE | Q31163 from UniProtKB/TrEMBL Length:263
Alignment length:184
38 48 58 68 78 88 98 108 118 128 138 148 158 168 178 188 198 208
Q31163_MOUSE 29 SRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTV 212
SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------MHC_II_beta-3qiwB02 B:13-87 ---------------C1 -set-3qiwB01 B:103- 185 - Pfam domains
Sec.struct. author ....eeeeeeeeeee......eeeeeeeee..eeeeeee.....eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee..---------.eeeeeeee.....eeeee---......eee...ee.....eeeeeee..-------.eeeee.......ee. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3qiw B 3 SRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVYPT---------LLVCSVSDFYPGNIEVRWF---KEEKTGIVSTGLVRNGDWTFQTLVMLET-------YTCQVEHPSLTDPVTV 186
12 22 32 42 52 62 72 82 92 102 | - | 122 132 | 142 152 162| 172 182
104 114 132 136 163 171
Chain C from PDB Type:PROTEIN Length:178
SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeee..eeeee....eeeeeee...eeeeeeeee.....eeeeeee..eeeee..eeeeee....eeeeee...hhhhheeeeeeeee......ee...eeeeee........eeeeee.......eeeeee..............ee...eeeeehhhheeeeeeeee.hhhhhh. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3qiw C 2 QVEQSPSALSLHEGTGSALRCNFTTTMRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERYSTLHIRDAQLEDSGTYFCAAEPSSGQKLVFGQGTILKVYLHIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQDSDVYITDKCVLDMRSMDFKSNSAVAWSACANAFN 186
11 21 31 41 51 61 71 81 91 101 111 121 131 141 || 153 163 173||
144| 174|
147 180
Chain D from PDB Type:PROTEIN Length:238
SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eee..eeeee....eeeeee......eeeeeee.....eeeeeeee..eeeeehhhhhhheeee......eeeee...hhhhheeeeeeee........ee...eeeeee.hhhhh...eeeee..hhhhhhhhheeeeeeeeeee....eeeeeee..eee...eee....ee.......eeeeeeeeeehhhhhh...eeeeeeee................eeeeeeee... Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3qiw D 2 MKVIQTPRYLVKGQGQKAKMRCIPEKGHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNNANSDYTFGSGTRLLVIEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPADSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSDEWTQDRAKPVTQIVSAEAWGRA 243
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181|| 193 203 213 || 225 235
182| 218|
185 221
Chain E from PDB Type:PROTEIN Length:13
aligned with CYC_MANSE | P00039 from UniProtKB/Swiss-Prot Length:108
Alignment length:13
108
106 |
CYC_MANSE 97 ADLIAYLKQATK- -
SCOP domains ------------- SCOP domains
CATH domains ------------- CATH domains
Pfam domains Cytochrom_C-- Pfam domains
Sec.struct. author .ee.......... Sec.struct. author
SAPs(SNPs) ------------- SAPs(SNPs)
PROSITE ------------- PROSITE
Transcript ------------- Transcript
3qiw E 2 ADLIAYLEQATKG 14
11
Legend: |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |