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(-) Description

Title :  TCR DOMAIN
 
Authors :  M. G. Rudolph, M. Huang, L. Teyton, I. A. Wilson
Date :  19 Mar 01  (Deposition) - 05 Dec 01  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Ig-Like Domain, T Cell Receptor, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. G. Rudolph, M. Huang, L. Teyton, I. A. Wilson
Crystal Structure Of An Isolated V(Alpha) Domain Of The 2C T-Cell Receptor.
J. Mol. Biol. V. 314 1 2001
PubMed-ID: 11724527  |  Reference-DOI: 10.1006/JMBI.2001.5113

(-) Compounds

Molecule 1 - CYTOTOXIC TCELL VALPHA DOMAIN
    Chains: A
    Engineered: YES
    Expression System: DROSOPHILA MELANOGASTER
    Expression System Cell Line: SC2
    Expression System Common: FRUIT FLY
    Expression System Taxid: 7227
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN OF ALPHA CHAIN
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: 2C TCR VALPHA DOMAIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:70 , SER A:72 , HOH A:208 , HOH A:216BINDING SITE FOR RESIDUE NAG A 200

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:90

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1I9E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1I9E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with TVA1_MOUSE | P01738 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:115
                                                                                                                                       130     
                                    30        40        50        60        70        80        90       100       110       120       130     
           TVA1_MOUSE    21 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVL-----   -
               SCOP domains d1i9ea_ A: T-cell antigen receptor                                                                                  SCOP domains
               CATH domains 1i9eA00 A:1-115 Immunoglobulins                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeeee....eee..eee.....eeeeeee......eeeeee.....eee.hhh.eee.........eee...hhhhheeeeeeeee..eeeee...eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1i9e A   1 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVLPYIQN 115
                                    10        20        30        40        50        60        70        80        90       100       110
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1I9E)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TVA1_MOUSE | P01738: 1g6r 1mwa 1tcr 2ckb 2icw 2oi9 3e2h 3e3q 4mvb 4mxq 4n0c 4n5e 4nhu

(-) Related Entries Specified in the PDB File

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