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(-) Description

Title :  CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS AT 2.5A RESOLUTION
 
Authors :  I. Toro, S. Thore, C. Mayer, J. Basquin, B. Seraphin, D. Suck
Date :  22 Feb 01  (Deposition) - 22 Aug 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2
Biol. Unit 1:  A,B,C,D,E,F,G  (1x)
Biol. Unit 2:  H,I,J,K,L,M,N  (1x)
Biol. Unit 3:  O,P,Q,R,S,T,U  (1x)
Biol. Unit 4:  V,W,X,Y,Z,1,2  (1x)
Biol. Unit 5:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),V (1x),W (1x),X (1x),Y (1x),Z (1x),1 (1x),2 (1x)
Biol. Unit 6:  H,I,J,K,L,M,N,O,P,Q,R,S,T,U  (1x)
Keywords :  Snrnp, Sm, Core Snrnp Domain, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Toro, S. Thore, C. Mayer, J. Basquin, B. Seraphin, D. Suck
Rna Binding In An Sm Core Domain: X-Ray Structure And Functional Analysis Of An Archaeal Sm Protein Complex.
Embo J. V. 20 2293 2001
PubMed-ID: 11331594  |  Reference-DOI: 10.1093/EMBOJ/20.9.2293
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE SNRNP SM-LIKE PROTEIN
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 1, 2
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET24D
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AF0875
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  12345678910111213141516171819202122232425262728
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVWXYZ12
Biological Unit 1 (1x): ABCDEFG                     
Biological Unit 2 (1x):        HIJKLMN              
Biological Unit 3 (1x):               OPQRSTU       
Biological Unit 4 (1x):                      VWXYZ12
Biological Unit 5 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)              V (1x)W (1x)X (1x)Y (1x)Z (1x)1 (1x)2 (1x)
Biological Unit 6 (1x):        HIJKLMNOPQRSTU       

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CIT2Ligand/IonCITRIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CIT-1Ligand/IonCITRIC ACID
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CIT-1Ligand/IonCITRIC ACID
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG F:20 , LEU F:21 , LYS F:22 , GLY F:23 , GLY F:24 , LYS G:22 , THR G:66BINDING SITE FOR RESIDUE CIT F 201
2AC2SOFTWARELEU K:21 , LYS K:22 , GLY K:23 , GLY K:24 , LYS L:22 , ARG L:25 , THR L:66BINDING SITE FOR RESIDUE CIT L 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1I4K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1I4K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1I4K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1I4K)

(-) Exons   (0, 0)

(no "Exon" information available for 1I4K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    11        21        31        41        51        61        71  
            RUXX_ARCFU    2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4k1_ 1: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4k100 1:2-73  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeee....eeeeeeeeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k 1  2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    11        21        31        41        51        61        71  


Chain 2 from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    11        21        31        41        51        61        71  
            RUXX_ARCFU    2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4k2_ 2: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4k200 2:2-73  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee......eeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k 2  2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    11        21        31        41        51        61        71  


Chain A from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    12        22        32        42        52        62        72  
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
               SCOP domains d1i4ka_ A: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4kA00 A:3-74  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k A  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
                                    12        22        32        42        52        62        72  


Chain B from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    11        21        31        41        51        61        71  
            RUXX_ARCFU    2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kb_ B: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4kB00 B:2-73  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k B  2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    11        21        31        41        51        61        71  


Chain C from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kc_ C: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kC00 C:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee....eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k C  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain D from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    11        21        31        41        51        61        71  
            RUXX_ARCFU    2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kd_ D: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4kD00 D:2-73  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhh....eeeeee...eeeeeeeeee.....eeeeeeeeee...eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k D  2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    11        21        31        41        51        61        71  


Chain E from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    12        22        32        42        52        62        72  
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
               SCOP domains d1i4ke_ E: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4kE00 E:3-74  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k E  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
                                    12        22        32        42        52        62        72  


Chain F from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kf_ F: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kF00 F:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k F  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain G from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    12        22        32        42        52        62        72  
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
               SCOP domains d1i4kg_ G: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4kG00 G:3-74  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k G  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
                                    12        22        32        42        52        62        72  


Chain H from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kh_ H: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kH00 H:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeee..eeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k H  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain I from PDB  Type:PROTEIN  Length:73
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:73
                                    11        21        31        41        51        61        71   
            RUXX_ARCFU    2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
               SCOP domains d1i4ki_ I: Archaeal homoheptameric Sm protein                             SCOP domains
               CATH domains 1i4kI00 I:2-74  [code=2.30.30.100, no name defined]                       CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                  1i4k I  2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
                                    11        21        31        41        51        61        71   


Chain J from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kj_ J: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kJ00 J:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k J  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain K from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    11        21        31        41        51        61        71  
            RUXX_ARCFU    2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kk_ K: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4kK00 K:2-73  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhh.....eeeeee...eeeeeeeeee.....eeeeeeeeee...eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k K  2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    11        21        31        41        51        61        71  


Chain L from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kl_ L: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kL00 L:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeee....eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee......eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k L  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain M from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    11        21        31        41        51        61        71  
            RUXX_ARCFU    2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4km_ M: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4kM00 M:2-73  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k M  2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    11        21        31        41        51        61        71  


Chain N from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kn_ N: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kN00 N:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh...eeeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k N  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain O from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4ko_ O: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kO00 O:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeee....eeeee..eee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k O  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain P from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    11        21        31        41        51        61        71  
            RUXX_ARCFU    2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kp_ P: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4kP00 P:2-73  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k P  2 PPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    11        21        31        41        51        61        71  


Chain Q from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kq_ Q: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kQ00 Q:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee....eeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k Q  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain R from PDB  Type:PROTEIN  Length:72
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:72
                                    12        22        32        42        52        62        72  
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
               SCOP domains d1i4kr_ R: Archaeal homoheptameric Sm protein                            SCOP domains
               CATH domains 1i4kR00 R:3-74  [code=2.30.30.100, no name defined]                      CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee....eeeeeeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  1i4k R  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAP 74
                                    12        22        32        42        52        62        72  


Chain S from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4ks_ S: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kS00 S:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee...eeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k S  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain T from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kt_ T: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kT00 T:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k T  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain U from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4ku_ U: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kU00 U:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeee..eeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k U  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain V from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kv_ V: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kV00 V:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k V  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain W from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kw_ W: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kW00 W:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k W  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain X from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kx_ X: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kX00 X:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k X  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain Y from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4ky_ Y: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kY00 Y:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeee....eee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k Y  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72 


Chain Z from PDB  Type:PROTEIN  Length:71
 aligned with RUXX_ARCFU | O29386 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:71
                                    12        22        32        42        52        62        72 
            RUXX_ARCFU    3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
               SCOP domains d1i4kz_ Z: Archaeal homoheptameric Sm protein                           SCOP domains
               CATH domains 1i4kZ00 Z:3-73  [code=2.30.30.100, no name defined]                     CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1i4k Z  3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPA 73
                                    12        22        32        42        52        62        72
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 28)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 28)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Roll (1513)
(-)
Topology: SH3 type barrels. (648)
(-)
Homologous Superfamily: [code=2.30.30.100, no name defined] (40)
(-)
Archaeoglobus fulgidus. Organism_taxid: 2234. (2)
1a1i4kC00C:3-73
1b1i4kF00F:3-73
1c1i4kU00U:3-73
1d1i4kV00V:3-73
1e1i4kW00W:3-73
1f1i4kX00X:3-73
1g1i4kY00Y:3-73
1h1i4kZ00Z:3-73
1i1i4k1001:2-73
1j1i4k2002:2-73
1k1i4kA00A:3-74
1l1i4kB00B:2-73
1m1i4kH00H:3-73
1n1i4kD00D:2-73
1o1i4kE00E:3-74
1p1i4kG00G:3-74
1q1i4kK00K:2-73
1r1i4kM00M:2-73
1s1i4kP00P:2-73
1t1i4kR00R:3-74
1u1i4kI00I:2-74
1v1i4kJ00J:3-73
1w1i4kL00L:3-73
1x1i4kN00N:3-73
1y1i4kO00O:3-73
1z1i4kQ00Q:3-73
1aa1i4kS00S:3-73
1ab1i4kT00T:3-73

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1I4K)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain 1,2,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z   (RUXX_ARCFU | O29386)
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.

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  1i4k
    Family and Domain Information: ProDom | SYSTERS
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  RUXX_ARCFU | O29386
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RUXX_ARCFU | O29386: 1i5l

(-) Related Entries Specified in the PDB File

1b34 CRYSTAL STRUCTURE OF THE D1D2 SUB-COMPLEX FROM THE HUMAN SNRNP CORE DOMAIN
1d3b CRYSTAL STRUCTURE OF THE D3B SUBCOMPLEX OF THE HUMAN CORE SNRNP DOMAIN AT 2.0A RESOLUTION