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1I4K
Biol. Unit 6
Info
Asym.Unit (315 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (81 KB)
Biol.Unit 4 (80 KB)
Biol.Unit 5 (157 KB)
Biol.Unit 6 (157 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM1) FROM ARCHAEOGLOBUS FULGIDUS AT 2.5A RESOLUTION
Authors
:
I. Toro, S. Thore, C. Mayer, J. Basquin, B. Seraphin, D. Suck
Date
:
22 Feb 01 (Deposition) - 22 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,1,2
Biol. Unit 1: A,B,C,D,E,F,G (1x)
Biol. Unit 2: H,I,J,K,L,M,N (1x)
Biol. Unit 3: O,P,Q,R,S,T,U (1x)
Biol. Unit 4: V,W,X,Y,Z,1,2 (1x)
Biol. Unit 5: A,B,C,D,E,F,G,V,W,X,Y,Z,1,2 (1x)
Biol. Unit 6: H,I,J,K,L,M,N,O,P,Q,R,S,T,U (1x)
Keywords
:
Snrnp, Sm, Core Snrnp Domain, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Toro, S. Thore, C. Mayer, J. Basquin, B. Seraphin, D. Suck
Rna Binding In An Sm Core Domain: X-Ray Structure And Functional Analysis Of An Archaeal Sm Protein Complex.
Embo J. V. 20 2293 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
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Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LEU K:21 , LYS K:22 , GLY K:23 , GLY K:24 , LYS L:22 , ARG L:25 , THR L:66
BINDING SITE FOR RESIDUE CIT L 202
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 28)
Info
All SCOP Domains
1a: SCOP_d1i4k1_ (1:)
1b: SCOP_d1i4k2_ (2:)
1c: SCOP_d1i4ki_ (I:)
1d: SCOP_d1i4kj_ (J:)
1e: SCOP_d1i4kk_ (K:)
1f: SCOP_d1i4kl_ (L:)
1g: SCOP_d1i4km_ (M:)
1h: SCOP_d1i4kn_ (N:)
1i: SCOP_d1i4ko_ (O:)
1j: SCOP_d1i4kp_ (P:)
1k: SCOP_d1i4kq_ (Q:)
1l: SCOP_d1i4kr_ (R:)
1m: SCOP_d1i4ka_ (A:)
1n: SCOP_d1i4ks_ (S:)
1o: SCOP_d1i4kt_ (T:)
1p: SCOP_d1i4ku_ (U:)
1q: SCOP_d1i4kv_ (V:)
1r: SCOP_d1i4kw_ (W:)
1s: SCOP_d1i4kx_ (X:)
1t: SCOP_d1i4ky_ (Y:)
1u: SCOP_d1i4kz_ (Z:)
1v: SCOP_d1i4kb_ (B:)
1w: SCOP_d1i4kc_ (C:)
1x: SCOP_d1i4kd_ (D:)
1y: SCOP_d1i4ke_ (E:)
1z: SCOP_d1i4kf_ (F:)
1aa: SCOP_d1i4kg_ (G:)
1ab: SCOP_d1i4kh_ (H:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Sm-like fold
(103)
Superfamily
:
Sm-like ribonucleoproteins
(95)
Family
:
Sm motif of small nuclear ribonucleoproteins, SNRNP
(31)
Protein domain
:
Archaeal homoheptameric Sm protein
(13)
Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]
(2)
1a
d1i4k1_
1:
1b
d1i4k2_
2:
1c
d1i4ki_
I:
1d
d1i4kj_
J:
1e
d1i4kk_
K:
1f
d1i4kl_
L:
1g
d1i4km_
M:
1h
d1i4kn_
N:
1i
d1i4ko_
O:
1j
d1i4kp_
P:
1k
d1i4kq_
Q:
1l
d1i4kr_
R:
1m
d1i4ka_
A:
1n
d1i4ks_
S:
1o
d1i4kt_
T:
1p
d1i4ku_
U:
1q
d1i4kv_
V:
1r
d1i4kw_
W:
1s
d1i4kx_
X:
1t
d1i4ky_
Y:
1u
d1i4kz_
Z:
1v
d1i4kb_
B:
1w
d1i4kc_
C:
1x
d1i4kd_
D:
1y
d1i4ke_
E:
1z
d1i4kf_
F:
1aa
d1i4kg_
G:
1ab
d1i4kh_
H:
[
close SCOP info
]
CATH Domains
(1, 28)
Info
all CATH domains
1a: CATH_1i4kC00 (C:3-73)
1b: CATH_1i4kF00 (F:3-73)
1c: CATH_1i4kU00 (U:3-73)
1d: CATH_1i4kV00 (V:3-73)
1e: CATH_1i4kW00 (W:3-73)
1f: CATH_1i4kX00 (X:3-73)
1g: CATH_1i4kY00 (Y:3-73)
1h: CATH_1i4kZ00 (Z:3-73)
1i: CATH_1i4k100 (1:2-73)
1j: CATH_1i4k200 (2:2-73)
1k: CATH_1i4kA00 (A:3-74)
1l: CATH_1i4kB00 (B:2-73)
1m: CATH_1i4kH00 (H:3-73)
1n: CATH_1i4kD00 (D:2-73)
1o: CATH_1i4kE00 (E:3-74)
1p: CATH_1i4kG00 (G:3-74)
1q: CATH_1i4kK00 (K:2-73)
1r: CATH_1i4kM00 (M:2-73)
1s: CATH_1i4kP00 (P:2-73)
1t: CATH_1i4kR00 (R:3-74)
1u: CATH_1i4kI00 (I:2-74)
1v: CATH_1i4kJ00 (J:3-73)
1w: CATH_1i4kL00 (L:3-73)
1x: CATH_1i4kN00 (N:3-73)
1y: CATH_1i4kO00 (O:3-73)
1z: CATH_1i4kQ00 (Q:3-73)
1aa: CATH_1i4kS00 (S:3-73)
1ab: CATH_1i4kT00 (T:3-73)
View:
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
[code=2.30.30.100, no name defined]
(40)
Archaeoglobus fulgidus. Organism_taxid: 2234.
(2)
1a
1i4kC00
C:3-73
1b
1i4kF00
F:3-73
1c
1i4kU00
U:3-73
1d
1i4kV00
V:3-73
1e
1i4kW00
W:3-73
1f
1i4kX00
X:3-73
1g
1i4kY00
Y:3-73
1h
1i4kZ00
Z:3-73
1i
1i4k100
1:2-73
1j
1i4k200
2:2-73
1k
1i4kA00
A:3-74
1l
1i4kB00
B:2-73
1m
1i4kH00
H:3-73
1n
1i4kD00
D:2-73
1o
1i4kE00
E:3-74
1p
1i4kG00
G:3-74
1q
1i4kK00
K:2-73
1r
1i4kM00
M:2-73
1s
1i4kP00
P:2-73
1t
1i4kR00
R:3-74
1u
1i4kI00
I:2-74
1v
1i4kJ00
J:3-73
1w
1i4kL00
L:3-73
1x
1i4kN00
N:3-73
1y
1i4kO00
O:3-73
1z
1i4kQ00
Q:3-73
1aa
1i4kS00
S:3-73
1ab
1i4kT00
T:3-73
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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