Chain A from PDB Type:PROTEIN Length:536
aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447
Alignment length:554
609 619 629 639 649 659 669 679 689 699 709 719 729 739 749 759 769 779 789 799 809 819 829 839 849 859 869 879 889 899 909 919 929 939 949 959 969 979 989 999 1009 1019 1029 1039 1049 1059 1069 1079 1089 1099 1109 1119 1129 1139 1149
POL_HV1B1 600 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 1153
SCOP domains d1hmva2 A:1-429 HIV-1 reverse transcriptase d1hmva1 A:430-554 HIV RNase H (Domain of reverse transcriptase) SCOP domains
CATH domains 1hmvA01 A:1-90,A:116-156 HIV Type 1 Reverse Transcriptase, subu nit A, domain 1 1hmvA02 1hmvA01 A:1-90,A:1 16-156 1hmvA02 A:91-115,A:157-225 [code=3.30.70.270, no name defined] 1hmvA03 A:226-319 [code=3.30.70.270, no name defined] 1hmvA04 A:320-426 [code=3.30.70.270, no name defined] 1hmvA05 A:427-554 [code=3.30.420.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..........................hhhhhhhhhhhhhhhhhh...................-----------..hhhhhhhh....................eeeeeee..................eeee-------eeeeeee.......hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeee...hhhhhhhhhhhhhhhhhh...............eee..eee...eeeee..........hhhhhhhhhhhhhhhh.......hhhhhh..............hhhhhhhhhhhhhhhh..eee.........eeeeeeee..eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhh.................................eeeeeeeeee....eeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhh......hhhhhhhhhhhhhh.eeeeeee.......hhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------L-----------------------------------------------------Q----------------Q------------------------- SAPs(SNPs)
PROSITE -------------------------------------------RT_POL PDB: A:44-234 UniProt: 643-833 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNASE_H PDB: A:434-554 UniProt: 1033-1156 PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hmv A 1 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAI-----------VDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIP-------GIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 554
10 20 30 40 50 60 | - | 80 90 100 110 120 130 | -| 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550
63 75 133 141
Chain B from PDB Type:PROTEIN Length:395
aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447
Alignment length:423
613 623 633 643 653 663 673 683 693 703 713 723 733 743 753 763 773 783 793 803 813 823 833 843 853 863 873 883 893 903 913 923 933 943 953 963 973 983 993 1003 1013 1023
POL_HV1B1 604 IETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026
SCOP domains d1hmvb_ B: HIV-1 reverse transcriptase SCOP domains
CATH domains 1hmvB01 B:5-92,B:116-156 HIV Type 1 Reverse Transcriptase, su bunit A, domain 1 ------1hmvB02 1hmvB01 B:5-92,B:116-156 1hmvB02 B:99-115,B:157-188 1hmvB03 B:189-319 [cod e=3.30.70.270, no name defined] 1hmvB04 B:320-425 [code=3.30.70.270, no name defined] -- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......................hhhhhhhhhhhhhhhhhh.eeee.......eeeeeeeee-----eeeeeehhhhhhh.....................eeeeeeee.................eee.........eee..........hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeee...hhhhhhhhhhhhhhhhhh-----------------------..................hhhhhhhhhhhhhhhhh.......hhhhhhhh...........hhhhhhhhhhhhhhh...............eeeeeee...eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhh......eeeee.......... Sec.struct. author
SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------RT_POL PDB: B:44-211 UniProt: 643-833 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hmv B 5 IETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKK-----WRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLR-----------------------HPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 427
14 24 34 44 54 64| | 74 84 94 104 114 124 134 144 154 164 174 184 194 204 | - - -| 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424
65 71 211 235
Chain C from PDB Type:PROTEIN Length:536
aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447
Alignment length:554
609 619 629 639 649 659 669 679 689 699 709 719 729 739 749 759 769 779 789 799 809 819 829 839 849 859 869 879 889 899 909 919 929 939 949 959 969 979 989 999 1009 1019 1029 1039 1049 1059 1069 1079 1089 1099 1109 1119 1129 1139 1149
POL_HV1B1 600 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 1153
SCOP domains d1hmvc2 C:1-429 HIV-1 reverse transcriptase d1hmvc1 C:430-554 HIV RNase H (Domain of reverse transcriptase) SCOP domains
CATH domains 1hmvC01 C:1-90,C:116-156 HIV Type 1 Reverse Transcriptase, subu nit A, domain 1 1hmvC02 1hmvC01 C:1-90,C:1 16-156 1hmvC02 C:91-115,C:157-225 [code=3.30.70.270, no name defined] 1hmvC03 C:226-319 [code=3.30.70.270, no name defined] 1hmvC04 C:320-426 [code=3.30.70.270, no name defined] 1hmvC05 C:427-554 [code=3.30.420.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..........................hhhhhhhhhhhhhhhhhh...................-----------..hhhhhhhh....................eeeeeee..................eeee-------eeeeeee.......hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeee...hhhhhhhhhhhhhhhhhh...............eee..eee...eeeee..........hhhhhhhhhhhhhhhh.......hhhhhh..............hhhhhhhhhhhhhhhh..eee.........eeeeeeee..eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhh.................................eeeeeeeeee....eeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhh......hhhhhhhhhhhhhh.eeeeeee.......hhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------L-----------------------------------------------------Q----------------Q------------------------- SAPs(SNPs)
PROSITE -------------------------------------------RT_POL PDB: C:44-234 UniProt: 643-833 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNASE_H PDB: C:434-554 UniProt: 1033-1156 PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hmv C 1 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAI-----------VDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIP-------GIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 554
10 20 30 40 50 60 | - | 80 90 100 110 120 130 | -| 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550
63 75 133 141
Chain D from PDB Type:PROTEIN Length:395
aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447
Alignment length:423
613 623 633 643 653 663 673 683 693 703 713 723 733 743 753 763 773 783 793 803 813 823 833 843 853 863 873 883 893 903 913 923 933 943 953 963 973 983 993 1003 1013 1023
POL_HV1B1 604 IETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026
SCOP domains d1hmvd_ D: HIV-1 reverse transcriptase SCOP domains
CATH domains 1hmvD01 D:5-92,D:116-156 HIV Type 1 Reverse Transcriptase, su bunit A, domain 1 ------1hmvD02 1hmvD01 D:5-92,D:116-156 1hmvD02 D:99-115,D:157-188 1hmvD03 D:189-319 [cod e=3.30.70.270, no name defined] 1hmvD04 D:320-425 [code=3.30.70.270, no name defined] -- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......................hhhhhhhhhhhhhhhhhh.eeee.......eeeeeeeee-----eeeeeehhhhhhh.....................eeeeeeee.................eee.........eee..........hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeee...hhhhhhhhhhhhhhhhhh-----------------------..................hhhhhhhhhhhhhhhhh.......hhhhhhhh...........hhhhhhhhhhhhhhh...............eeeeeee...eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhh......eeeee.......... Sec.struct. author
SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------RT_POL PDB: D:44-211 UniProt: 643-833 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hmv D 5 IETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKK-----WRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLR-----------------------HPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 427
14 24 34 44 54 64| | 74 84 94 104 114 124 134 144 154 164 174 184 194 204 | - - -| 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424
65 71 211 235
Chain E from PDB Type:PROTEIN Length:536
aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447
Alignment length:554
609 619 629 639 649 659 669 679 689 699 709 719 729 739 749 759 769 779 789 799 809 819 829 839 849 859 869 879 889 899 909 919 929 939 949 959 969 979 989 999 1009 1019 1029 1039 1049 1059 1069 1079 1089 1099 1109 1119 1129 1139 1149
POL_HV1B1 600 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 1153
SCOP domains d1hmve2 E:1-429 HIV-1 reverse transcriptase d1hmve1 E:430-554 HIV RNase H (Domain of reverse transcriptase) SCOP domains
CATH domains 1hmvE01 E:1-90,E:116-156 HIV Type 1 Reverse Transcriptase, subu nit A, domain 1 1hmvE02 1hmvE01 E:1-90,E:1 16-156 1hmvE02 E:91-115,E:157-225 [code=3.30.70.270, no name defined] 1hmvE03 E:226-319 [code=3.30.70.270, no name defined] 1hmvE04 E:320-426 [code=3.30.70.270, no name defined] 1hmvE05 E:427-554 [code=3.30.420.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..........................hhhhhhhhhhhhhhhhhh...................-----------..hhhhhhhh....................eeeeeee..................eeee-------eeeeeee.......hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeee...hhhhhhhhhhhhhhhhhh...............eee..eee...eeeee..........hhhhhhhhhhhhhhhh.......hhhhhh..............hhhhhhhhhhhhhhhh..eee.........eeeeeeee..eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhh.................................eeeeeeeeee....eeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhh......hhhhhhhhhhhhhh.eeeeeee.......hhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------L-----------------------------------------------------Q----------------Q------------------------- SAPs(SNPs)
PROSITE -------------------------------------------RT_POL PDB: E:44-234 UniProt: 643-833 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNASE_H PDB: E:434-554 UniProt: 1033-1156 PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hmv E 1 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAI-----------VDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIP-------GIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 554
10 20 30 40 50 60 | - | 80 90 100 110 120 130 | -| 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550
63 75 133 141
Chain F from PDB Type:PROTEIN Length:395
aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447
Alignment length:423
613 623 633 643 653 663 673 683 693 703 713 723 733 743 753 763 773 783 793 803 813 823 833 843 853 863 873 883 893 903 913 923 933 943 953 963 973 983 993 1003 1013 1023
POL_HV1B1 604 IETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026
SCOP domains d1hmvf_ F: HIV-1 reverse transcriptase SCOP domains
CATH domains 1hmvF01 F:5-92,F:116-156 HIV Type 1 Reverse Transcriptase, su bunit A, domain 1 ------1hmvF02 1hmvF01 F:5-92,F:116-156 1hmvF02 F:99-115,F:157-188 1hmvF03 F:189-319 [cod e=3.30.70.270, no name defined] 1hmvF04 F:320-425 [code=3.30.70.270, no name defined] -- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......................hhhhhhhhhhhhhhhhhh.eeee.......eeeeeeeee-----eeeeeehhhhhhh.....................eeeeeeee.................eee.........eee..........hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeee...hhhhhhhhhhhhhhhhhh-----------------------..................hhhhhhhhhhhhhhhhh.......hhhhhhhh...........hhhhhhhhhhhhhhh...............eeeeeee...eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhh......eeeee.......... Sec.struct. author
SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------RT_POL PDB: F:44-211 UniProt: 643-833 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hmv F 5 IETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKK-----WRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLR-----------------------HPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 427
14 24 34 44 54 64| | 74 84 94 104 114 124 134 144 154 164 174 184 194 204 | - - -| 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424
65 71 211 235
Chain G from PDB Type:PROTEIN Length:536
aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447
Alignment length:554
609 619 629 639 649 659 669 679 689 699 709 719 729 739 749 759 769 779 789 799 809 819 829 839 849 859 869 879 889 899 909 919 929 939 949 959 969 979 989 999 1009 1019 1029 1039 1049 1059 1069 1079 1089 1099 1109 1119 1129 1139 1149
POL_HV1B1 600 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 1153
SCOP domains d1hmvg2 G:1-429 HIV-1 reverse transcriptase d1hmvg1 G:430-554 HIV RNase H (Domain of reverse transcriptase) SCOP domains
CATH domains 1hmvG01 G:1-90,G:116-156 HIV Type 1 Reverse Transcriptase, subu nit A, domain 1 1hmvG02 1hmvG01 G:1-90,G:1 16-156 1hmvG02 G:91-115,G:157-225 [code=3.30.70.270, no name defined] 1hmvG03 G:226-319 [code=3.30.70.270, no name defined] 1hmvG04 G:320-426 [code=3.30.70.270, no name defined] 1hmvG05 G:427-554 [code=3.30.420.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..........................hhhhhhhhhhhhhhhhhh...................-----------..hhhhhhhh....................eeeeeee..................eeee-------eeeeeee.......hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeee...hhhhhhhhhhhhhhhhhh...............eee..eee...eeeee..........hhhhhhhhhhhhhhhh.......hhhhhh..............hhhhhhhhhhhhhhhh..eee.........eeeeeeee..eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhh.................................eeeeeeeeee....eeeeeeee..eeeeeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhh......hhhhhhhhhhhhhh.eeeeeee.......hhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------L-----------------------------------------------------Q----------------Q------------------------- SAPs(SNPs)
PROSITE -------------------------------------------RT_POL PDB: G:44-234 UniProt: 643-833 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNASE_H PDB: G:434-554 UniProt: 1033-1156 PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hmv G 1 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAI-----------VDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIP-------GIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 554
10 20 30 40 50 60 | - | 80 90 100 110 120 130 | -| 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550
63 75 133 141
Chain H from PDB Type:PROTEIN Length:395
aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447
Alignment length:423
613 623 633 643 653 663 673 683 693 703 713 723 733 743 753 763 773 783 793 803 813 823 833 843 853 863 873 883 893 903 913 923 933 943 953 963 973 983 993 1003 1013 1023
POL_HV1B1 604 IETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 1026
SCOP domains d1hmvh_ H: HIV-1 reverse transcriptase SCOP domains
CATH domains 1hmvH01 H:5-92,H:116-156 HIV Type 1 Reverse Transcriptase, su bunit A, domain 1 ------1hmvH02 1hmvH01 H:5-92,H:116-156 1hmvH02 H:99-115,H:157-188 1hmvH03 H:189-319 [cod e=3.30.70.270, no name defined] 1hmvH04 H:320-425 [code=3.30.70.270, no name defined] -- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......................hhhhhhhhhhhhhhhhhh.eeee.......eeeeeeeee-----eeeeeehhhhhhh.....................eeeeeeee.................eee.........eee..........hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeee...hhhhhhhhhhhhhhhhhh-----------------------..................hhhhhhhhhhhhhhhhh.......hhhhhhhh...........hhhhhhhhhhhhhhh...............eeeeeee...eeeeeeeee..eeeeeeeeee......hhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhh......eeeee.......... Sec.struct. author
SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------RT_POL PDB: H:44-211 UniProt: 643-833 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1hmv H 5 IETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKK-----WRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLR-----------------------HPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWY 427
14 24 34 44 54 64| | 74 84 94 104 114 124 134 144 154 164 174 184 194 204 | - - -| 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424
65 71 211 235
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |