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(-) Description

Title :  CEL6A (Y169F) WITH A NON-HYDROLYSABLE CELLOTETRAOSE
 
Authors :  J. -Y. Zou, T. A. Jones
Date :  06 Jul 99  (Deposition) - 18 Sep 99  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Glycosidase, Glycoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. -Y. Zou, G. J. Kleywegt, J. Stahlberg, H. Driguez, W. Nerinckx, M. Claeyssens, A. Koivula, T. T. Teeri, T. A. Jones
Crystallographic Evidence For Substrate Ring Distortion And Protein Conformational Changes During Catalysis In Cellobiohydrolase Cel6A From Trichoderma Reesei
Structure V. 7 1035 1999
PubMed-ID: 10508787  |  Reference-DOI: 10.1016/S0969-2126(99)80171-3
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CELLOBIOHYDROLASE CEL6A (FORMERLY CALLED CBH II)
    ChainsA, B
    EC Number3.2.1.91
    EngineeredYES
    Expression SystemTRICHODERMA REESEI
    Expression System Taxid51453
    FragmentCATALYTIC DOMAIN, RESIDUES 83-447
    GeneCBH2 (Y169F)
    MutationYES
    Organism ScientificTRICHODERMA REESEI
    Organism Taxid51453
    SynonymCEL6A (Y169F)

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 32)

Asymmetric Unit (7, 32)
No.NameCountTypeFull Name
1CD4Ligand/IonCADMIUM ION
2GLC4Ligand/IonALPHA-D-GLUCOSE
3GOL2Ligand/IonGLYCEROL
4MAN14Ligand/IonALPHA-D-MANNOSE
5MGL2Ligand/IonO1-METHYL-GLUCOSE
6NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SGC2Ligand/Ion4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE
Biological Unit 1 (6, 14)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2GLC2Ligand/IonALPHA-D-GLUCOSE
3GOL1Ligand/IonGLYCEROL
4MAN7Ligand/IonALPHA-D-MANNOSE
5MGL1Ligand/IonO1-METHYL-GLUCOSE
6NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SGC1Ligand/Ion4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE
Biological Unit 2 (6, 14)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2GLC2Ligand/IonALPHA-D-GLUCOSE
3GOL1Ligand/IonGLYCEROL
4MAN7Ligand/IonALPHA-D-MANNOSE
5MGL1Ligand/IonO1-METHYL-GLUCOSE
6NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SGC1Ligand/Ion4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:146 , HOH A:2142BINDING SITE FOR RESIDUE CD A 895
02AC2SOFTWAREASP A:412 , HIS A:414 , HOH A:2318BINDING SITE FOR RESIDUE CD A 896
03AC3SOFTWAREGLU B:146 , HOH B:2131BINDING SITE FOR RESIDUE CD B 895
04AC4SOFTWAREASP B:412 , HIS B:414 , HOH B:2297 , HOH B:2298BINDING SITE FOR RESIDUE CD B 896
05AC5SOFTWARETYR A:103 , ASP A:137 , LYS A:141 , ALA A:427 , GLY A:428 , GLC A:904 , HOH A:2371 , HOH A:2372 , HOH A:2373BINDING SITE FOR RESIDUE GOL A 910
06AC6SOFTWARETYR B:103 , ASP B:137 , LYS B:141 , ALA B:427 , GLY B:428 , GLC B:904 , HOH B:2316 , HOH B:2357 , HOH B:2358 , HOH B:2359BINDING SITE FOR RESIDUE GOL B 910
07AC7SOFTWARETHR A:87 , SER A:89BINDING SITE FOR MONO-SACCHARIDE MAN A 503 BOUND TO THR A 87
08AC8SOFTWARETHR A:97 , ASN A:161 , HOH A:2356BINDING SITE FOR MONO-SACCHARIDE MAN A 504 BOUND TO THR A 97
09AC9SOFTWARETYR A:103 , SER A:106 , GLU A:107 , LEU A:111 , MAN A:507 , HOH A:2357BINDING SITE FOR MONO-SACCHARIDE MAN A 505 BOUND TO SER A 106
10BC1SOFTWAREALA A:105 , SER A:109 , ALA A:125 , ALA A:128 , LYS A:129 , HOH A:2037 , HOH A:2358 , HOH A:2359 , ASN B:339BINDING SITE FOR MONO-SACCHARIDE MAN A 506 BOUND TO SER A 109
11BC2SOFTWARESER A:106 , SER A:110 , MAN A:505 , HOH A:2357 , HOH A:2359 , HOH A:2360 , GLN B:281 , HIS B:340BINDING SITE FOR MONO-SACCHARIDE MAN A 507 BOUND TO SER A 110
12BC3SOFTWARESER A:115 , GLN A:432 , HOH A:2021 , HOH A:2023 , HOH A:2361 , HOH A:2362 , HOH A:2364 , HOH A:2365BINDING SITE FOR MONO-SACCHARIDE MAN A 508 BOUND TO SER A 115
13BC4SOFTWAREGLY A:118 , THR A:122 , HOH A:2366 , HOH A:2367 , HOH A:2368BINDING SITE FOR MONO-SACCHARIDE MAN A 509 BOUND TO THR A 122
14BC5SOFTWARELEU A:243 , ASN A:289 , HOH A:2353 , HOH A:2354BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 289
15BC6SOFTWARETRP A:309 , ASN A:310 , THR A:312 , PHE A:391 , HOH A:2294 , HOH A:2355BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 310
16BC7SOFTWARETHR B:87 , SER B:89BINDING SITE FOR MONO-SACCHARIDE MAN B 503 BOUND TO THR B 87
17BC8SOFTWARETHR B:97 , ASN B:161 , HOH B:2335 , HOH B:2336BINDING SITE FOR MONO-SACCHARIDE MAN B 504 BOUND TO THR B 97
18BC9SOFTWARETYR B:103 , SER B:106 , LEU B:111 , MAN B:507 , HOH B:2337 , HOH B:2338BINDING SITE FOR MONO-SACCHARIDE MAN B 505 BOUND TO SER B 106
19CC1SOFTWAREALA B:105 , SER B:109 , ALA B:125 , ALA B:128 , LYS B:129 , HOH B:2339 , HOH B:2340BINDING SITE FOR MONO-SACCHARIDE MAN B 506 BOUND TO SER B 109
20CC2SOFTWARESER B:106 , SER B:110 , MAN B:505 , HOH B:2338 , HOH B:2341 , HOH B:2342BINDING SITE FOR MONO-SACCHARIDE MAN B 507 BOUND TO SER B 110
21CC3SOFTWARESER B:115 , GLN B:432 , HOH B:2343 , HOH B:2344 , HOH B:2345 , HOH B:2346 , HOH B:2347 , HOH B:2348 , HOH B:2349 , HOH B:2350 , HOH B:2351BINDING SITE FOR MONO-SACCHARIDE MAN B 508 BOUND TO SER B 115
22CC4SOFTWAREGLY B:118 , THR B:122BINDING SITE FOR MONO-SACCHARIDE MAN B 509 BOUND TO THR B 122
23CC5SOFTWARELEU B:243 , GLU B:244 , ASN B:247 , ASN B:289 , HOH B:2171 , HOH B:2332BINDING SITE FOR MONO-SACCHARIDE NAG B 501 BOUND TO ASN B 289
24CC6SOFTWARETRP B:309 , ASN B:310 , THR B:312 , PHE B:391 , HOH B:2333 , HOH B:2334BINDING SITE FOR MONO-SACCHARIDE NAG B 502 BOUND TO ASN B 310
25CC7SOFTWARETRP A:135 , ASP A:137 , PHE A:169 , ASP A:175 , ALA A:178 , SER A:181 , ASP A:221 , ASN A:229 , HIS A:266 , GLY A:268 , TRP A:269 , ASN A:305 , TRP A:364 , GLY A:365 , TRP A:367 , LYS A:395 , PRO A:396 , GLU A:399 , ASP A:401 , GOL A:910 , HOH A:2096 , HOH A:2101 , HOH A:2154 , HOH A:2199 , HOH A:2219 , HOH A:2276 , HOH A:2313 , HOH A:2369 , HOH A:2370 , HOH A:2371BINDING SITE FOR POLY-SACCHARIDE RESIDUES MGL A 901 THROUGH GLC A 904
26CC8SOFTWARETRP A:135 , ASP A:137 , PHE A:169 , ASP A:175 , ALA A:178 , SER A:181 , ASP A:221 , ASN A:229 , HIS A:266 , GLY A:268 , TRP A:269 , ASN A:305 , TRP A:364 , GLY A:365 , TRP A:367 , LYS A:395 , PRO A:396 , GLU A:399 , ASP A:401 , GOL A:910 , HOH A:2096 , HOH A:2101 , HOH A:2154 , HOH A:2199 , HOH A:2219 , HOH A:2276 , HOH A:2313 , HOH A:2369 , HOH A:2370 , HOH A:2371 , TRP B:135 , ASP B:137 , PHE B:169 , ASP B:175 , ALA B:178 , SER B:181 , ASP B:221 , ASN B:229 , HIS B:266 , GLY B:268 , TRP B:269 , ASN B:305 , TRP B:364 , GLY B:365 , TRP B:367 , LYS B:395 , GLU B:399 , ASP B:401 , GOL B:910 , HOH B:2082 , HOH B:2265 , HOH B:2294 , HOH B:2352 , HOH B:2353 , HOH B:2354 , HOH B:2355 , HOH B:2356 , HOH B:2359BINDING SITE FOR POLY-SACCHARIDE RESIDUES MGL B 901 THROUGH GLC B 904

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:176 -A:235
2A:368 -A:415
3B:176 -B:235
4B:368 -B:415

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gln A:357 -Pro A:358
2Gln A:422 -Pro A:423
3Asn A:443 -Pro A:444
4Gln B:357 -Pro B:358
5Gln B:422 -Pro B:423
6Asn B:443 -Pro B:444

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QJW)

(-) PROSITE Motifs  (2, 4)

Asymmetric Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F6_1PS00655 Glycosyl hydrolases family 6 signature 1.GUX2_HYPJE191-207
 
  2A:167-183
B:167-183
2GLYCOSYL_HYDROL_F6_2PS00656 Glycosyl hydrolases family 6 signature 2.GUX2_HYPJE239-248
 
  2A:215-224
B:215-224
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F6_1PS00655 Glycosyl hydrolases family 6 signature 1.GUX2_HYPJE191-207
 
  1A:167-183
-
2GLYCOSYL_HYDROL_F6_2PS00656 Glycosyl hydrolases family 6 signature 2.GUX2_HYPJE239-248
 
  1A:215-224
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F6_1PS00655 Glycosyl hydrolases family 6 signature 1.GUX2_HYPJE191-207
 
  1-
B:167-183
2GLYCOSYL_HYDROL_F6_2PS00656 Glycosyl hydrolases family 6 signature 2.GUX2_HYPJE239-248
 
  1-
B:215-224

(-) Exons   (0, 0)

(no "Exon" information available for 1QJW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:362
 aligned with GUX2_HYPJE | P07987 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:362
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469  
           GUX2_HYPJE   110 ATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQFVVYDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNEKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 471
               SCOP domains d1qjwa_ A: Cellobiohydrolase II (Cel6)                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1qjwA00 A:86-447 7-stranded glycosidases (cellulases)                                                                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhhhhh...eeeeeee.................hhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhhhh.....eeeeee.............hhhhh.....hhhhhhhhhhhhhhhh.....eeeee.....................................eeeee...................hhhhhh.............hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------GLYCOSYL_HYDROL_F-------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qjw A  86 ATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQFVVFDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNEKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 447
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445  

Chain B from PDB  Type:PROTEIN  Length:362
 aligned with GUX2_HYPJE | P07987 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:362
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469  
           GUX2_HYPJE   110 ATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQFVVYDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNEKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 471
               SCOP domains d1qjwb_ B: Cellobiohydrolase II (Cel6)                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1qjwB00 B:86-447 7-stranded glycosidases (cellulases)                                                                                                                                                                                                                                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhhhhhh...eeeeeee.................hhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee.............hhhhh.....hhhhhhhhhhhhhhhh.....eeeee.....................................eeeee...................hhhhhh.............hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------GLYCOSYL_HYDROL_F-------------------------------GLYCOSYL_H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qjw B  86 ATYSGNPFVGVTPWANAYYASEVSSLAIPSLTGAMATAAAAVAKVPSFMWLDTLDKTPLMEQTLADIRTANKNGGNYAGQFVVFDLPDRDCAALASNGEYSIADGGVAKYKNYIDTIRQIVVEYSDIRTLLVIEPDSLANLVTNLGTPKCANAQSAYLECINYAVTQLNLPNVAMYLDAGHAGWLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNEKLYIHAIGPLLANHGWSNAFFITDQGRSGKQPTGQQQWGDWCNVIGTGFGIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGAWFQAYFVQLLTNANPSFL 447
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1QJW)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (GUX2_HYPJE | P07987)
molecular function
    GO:0016162    cellulose 1,4-beta-cellobiosidase activity    Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose and cellotetraose, releasing cellobiose from the non-reducing ends of the chains.
    GO:0030248    cellulose binding    Interacting selectively and non-covalently with cellulose.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0030245    cellulose catabolic process    The chemical reactions and pathways resulting in the breakdown of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000272    polysaccharide catabolic process    The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  Cis Peptide Bonds
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    Gln A:357 - Pro A:358   [ RasMol ]  
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        GUX2_HYPJE | P079871cb2 1hgw 1hgy 1qk0 1qk2 3cbh 4au0 4ax6 4ax7 4i5r 4i5u

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