1H9H - JenaLib

Title :   COMPLEX OF EETI-II WITH PORCINE TRYPSIN

Authors :   R. Kraetzner, A. Wentzel, H. Kolmar, I. Uson

Date :   12 Mar 01 (Deposition) - 26 Jul 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.50

Chains :   Asym./Biol. Unit : E,I

Keywords :   Hydrolase Inhibitor, Complex (Serine Protease/Inhibitor), Trypsin, Squash Inhibitor, Cystine Knot, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Kraetzner, J. E. Debreczeni, T. Pape, T. R. Schneider, A. Wentzel, H. Kolmar, G. M. Sheldrick, I. Uson
Structure Of Ecballium Elaterium Trypsin Inhibitor Ii (Eeti-Ii): A Rigid Molecular Scaffold
Acta Crystallogr. , Sect. D V. 61 1255 2005
PubMed-ID: 16131759 | Reference-DOI: 10.1107/S0907444905021207
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (8, 8)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

PROSITE Motifs (4, 4)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain E from PDB  Type:PROTEIN  Length:231
 aligned with TRYP_PIG | P00761 from UniProtKB/Swiss-Prot  Length:231

    Alignment length:231
                                   16                 34               50                                                                         125                   146                                  182        192            206                         
                                 15 |               33 |             49 |                                                                       124 |                 145 |                                181 |      191 |          205 |                         
                                  | 17        27     | |36        46  | |   55        65        75        85        95       105       115        |-|      134       144| |    153       163       173       182        |-|      201   | | 210       220       230 
            TRYP_PIG      9 IVGGYTC-AANSIPYQVSLNSGSHFC-GGSLINSQWVVSAAHC-YKSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTEC-LISGWGNTKSSGSSYPSLLQC-LKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSC-QGDSGGPVVC-NGQLQGIVSWGYGC-AQKNKPGVYTKVCNYVNWIQQTIAAN  231
               SCOP domains d1h9he  E: Trypsin(ogen)                                                                                                                                                                                                                SCOP domains
               CATH domains 1h9hE0       1h9hE02 E:281120,E:233-245 Trppsin-like serine proteases                                    1h9hE01 E:16-77,E:121-232 Trypsin-lkke serine proteases                                                          1h9hE02       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.........eeeee...eeeeeeeeee..eeeehhhhhh....eeee............eeeeeeeeee.............eeeee........................eeeeeee...............eeeeeee..hhhhhhhhh.......eeee.................eee....eeeeeeeee..........eeeee...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) TRYPSIN_DOM  PDB: E:16-243 UniProt: 9-229                                                                                                                                                                                            -- PROSITE (2)
                PROSITE (1) -------------------------------------TRYPSI------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER  ------------------------------------------- PROSITE (1)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1h9h E   16 IVGGYTCSAANSIPYQVSLNSGSHFCSGGSLINSQWVVSAAHCSYKSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECSLISGWGNTKSSGSSYPSLLQCSLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCSQGDSGGPVVCSNGQLQGIVSWGYGCSAQKNKPGVYTKVCNYVNWIQQTIAAN  245
                                    24        34|       45        55        64  ||    75        85        95       105       115       125|  ||  136       146       156       165       175      184B    |  192       201  ||   215 ||   |224       234       244 
                                              34|                              67|                                                     125|  ||                                                   184B 188B               204|     217|   |                        
                                               37                               69                                                      127  ||                                                                            209      219   |                        
                                                                                                                                           130|                                                                                        221B                        
                                                                                                                                            132

Chain I from PDB  Type:PROTEIN  Length:32
 aligned with ITR2_ECBEL | P12071 from UniProtKB/Swiss-Prot  Length:30

    Alignment length:32
                                           16           28  
                                         15 |         27 |  
                                    10    | | 19       |28  
          ITR2_ECBEL      1 GCPRILMRCKQDSDC-LAGCVCGPNGFC-GSP   30
               SCOP domains d1h9hi_ I: Tryssin inhibito      SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author .ee.......hhhh......ee.....eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -SQUASH_INHIBITOR     ---------- PROSITE
                 Transcript -------------------------------- Transcript
                1h9h I    1 GCPRILIRCKQDSDCSLAGCVCGPNGFCSGSP   30
                                    10        19        28

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (14, 15)

Asymmetric/Biological Unit(hide GO term definitions)

Chain E (TRYP_PIG | P00761)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0007586	digestion	The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain I (ITR2_ECBEL | P12071)

molecular function
	GO:0004866	endopeptidase inhibitor activity	Stops, prevents or reduces the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
	GO:0030414	peptidase inhibitor activity	Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
	GO:0004867	serine-type endopeptidase inhibitor activity	Stops, prevents or reduces the activity of serine-type endopeptidases, enzymes that catalyze the hydrolysis of nonterminal peptide bonds in a polypeptide chain; a serine residue (and a histidine residue) are at the active center of the enzyme.
biological process
	GO:0010951	negative regulation of endopeptidase activity	Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
	GO:0010466	negative regulation of peptidase activity	Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	1h9h
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	ITR2_ECBEL \| P12071
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	TRYP_PIG \| P00761
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Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1aks	CRYSTAL STRUCTURE OF THE FIRST ACTIVE AUTOLYSATE FORM OF THE PORCINE ALPHA TRYPSIN
1an1	LEECH-DERIVED TRYPTASE INHIBITOR/TRYPSIN COMPLEX
1avw	COMPLEX PORCINE PANCREATIC TRYPSIN/SOYBEAN TRYPSIN INHIBITOR, ORTHORHOMBIC CRYSTAL FORM
1avx	COMPLEX PORCINE PANCREATIC TRYPSIN/SOYBEAN TRYPSIN INHIBITOR, TETRAGONAL CRYSTAL FORM
1c9p	COMPLEX OF BDELLASTASIN WITH PORCINE TRYPSIN
1d3o	KNOWLEDGE BASED MODEL OF A SERINE PROTEASE INHIBITOR OF CUCURBITACEAE FAMILY (THEORETICAL MODEL) BOUND TO TRYPSIN
1df2	KNOWLEDGE BASED MODEL OF A SERINE PROTEASE INHIBITOR OF CUCURBITACEAE FAMILY (THEORETICAL MODEL) BOUND TO TRYPSIN
1eja	STRUCTURE OF PORCINE TRYPSIN COMPLEXED WITH BDELLASTASIN, AN ANTISTASIN-TYPE INHIBITOR
1ept	PORCINE E-TRYPSIN
1ewu	KNOWLEDGE BASED MODEL OF A SERINE PROTEASE INHIBITOR OFCUCURBITACEAE FAMILY (THEORETICAL MODEL) BOUND TO TRYPSIN.
1fmg	CRYSTAL STRUCTURE OF PORCINE BETA TRYPSIN WITH 0.04%POLYDOCANOL
1fn6	CRYSTAL STRUCTURE OF PORCINE BETA TRYPSIN WITH 0.1%POLYDOCANOL
1fni	CRYSTAL STRUCTURE OF PORCINE BETA TRYPSIN WITH 0.01%POLYDOCANOL
1h9h	COMPLEX OF EETI-II WITH PORCINE TRYPSIN
1ldt	COMPLEX OF LEECH-DERIVED TRYPTASE INHIBITOR WITH PORCINE TRYPSIN
1lt2	PREDICTION OF TERTIARY STRUCTURE OF LEUCAENA LEUCOCEPHALATRYPSIN INHIBITOR/TRYPSIN COMPLEX.
1mct	TRYPSIN COMPLEXED WITH INHIBITOR FROM BITTER GOURD
1qqu	CRYSTAL STRUCTURE OF PORCINE BETA TRYPSIN WITH BOUND ACETATE ION
1r0t	CRYSTAL STRUCTURE OF TRYPSIN-SECOND DOMAIN OF THE OVOMUCOIDTURKEY EGG WHITE INHIBITOR COMPLEX
1s5s	PORCINE TRYPSIN COMPLEXED WITH GUANIDINE-3- PROPANOLINHIBITOR
1s6f	PORCINE TRYPSIN COVALENT COMPLEX WITH BORATE AND GUANIDINE-3 INHIBITOR
1s6h	PORCINE TRYPSIN COMPLEXED WITH GUANIDINE-3- PROPANOLINHIBITOR
1s81	PORCINE TRYPSIN WITH NO INHIBITOR BOUND
1s82	PORCINE TRYPSIN COMPLEXED WITH BORATE AND ETHYLENE GLYCOL
1s83	PORCINE TRYPSIN COMPLEXED WITH 4-AMINO PROPANOL
1s84	PORCINE TRYPSIN COVALENT COMPLEX WITH 4- AMINO BUTANOL,BORATE AND ETHYLENE GLYCOL
1s85	PORCINE TRYPSIN COMPLEXED WITH P-HYDROXYMETHYL BENZAMIDINEAND BORATE
1tfx	COMPLEX OF THE SECOND KUNITZ DOMAIN OF TISSUE FACTOR PATHWAY INHIBITOR WITH PORCINE TRYPSIN

Description