1GVM - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CHOLINE BINDING DOMAIN OF THE MAJOR AUTOLYSIN (C-LYTA) FROM STREPTOCOCCUS PNEUMONIAE

Authors :   C. Fernandez-Tornero, R. Lopez, E. Garcia, G. Gimenez-Gallego, A. Romero

Date :   15 Feb 02 (Deposition) - 01 Aug 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Choline-Binding Domain, Cell Wall Attachment (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Fernandez-Tornero, E. Garcia, R. Lopez, G. Gimenez-Gallego, A. Romero
Two New Crystal Forms Of The Choline-Binding Domain Of The Major Pneumococcal Autolysin: Insights Into The Dynamics Of The Active Dimeric
J. Mol. Biol. V. 321 163 2002
PubMed-ID: 12139941 | Reference-DOI: 10.1016/S0022-2836(02)00596-X
(for further references see the PDB file header)

Molecule 1 - AUTOLYSIN
	Chains	:	A, B, C, D, E, F
	EC Number	:	3.5.1.28
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PCE17
	Expression System Strain	:	RB791
	Expression System Taxid	:	562
	Organism Common	:	PNEUMOCOCCUS
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	1313
	Synonym	:	MAJOR AUTOLYSIN, N-ACETYLMURAMOYL-L-ALANINE AMIDASE, MUREIN HYDROLASE, MUCOPEPTIDE AMINOHYDROLASE, CELL WALL HYDROLASE

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 22)

No.	Name	Count	Type	Full Name
1	CHT	20	Ligand/Ion	CHOLINE ION
2	DDQ	1	Ligand/Ion	DECYLAMINE-N,N-DIMETHYL-N-OXIDE
3	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 1 (1, 8)

No.	Name	Count	Type	Full Name
1	CHT	8	Ligand/Ion	CHOLINE ION
2	DDQ	-1	Ligand/Ion	DECYLAMINE-N,N-DIMETHYL-N-OXIDE
3	TRS	-1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 2 (1, 7)

No.	Name	Count	Type	Full Name
1	CHT	7	Ligand/Ion	CHOLINE ION
2	DDQ	-1	Ligand/Ion	DECYLAMINE-N,N-DIMETHYL-N-OXIDE
3	TRS	-1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 3 (3, 7)

No.	Name	Count	Type	Full Name
1	CHT	5	Ligand/Ion	CHOLINE ION
2	DDQ	1	Ligand/Ion	DECYLAMINE-N,N-DIMETHYL-N-OXIDE
3	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:199 , TRP A:206 , MET A:237 , GLU A:254	BINDING SITE FOR RESIDUE CHT A 401
02	AC2	SOFTWARE	TRP A:220 , TRP A:228 , GLU A:275	BINDING SITE FOR RESIDUE CHT A 402
03	AC3	SOFTWARE	TRP A:241 , TRP A:248 , TYR A:264 , TYR A:269	BINDING SITE FOR RESIDUE CHT A 403
04	AC4	SOFTWARE	TYR A:214 , TRP A:261 , TYR A:293 , ASP B:312	BINDING SITE FOR RESIDUE CHT A 404
05	AC5	SOFTWARE	PHE B:199 , TYR B:229 , GLU B:254	BINDING SITE FOR RESIDUE CHT B 401
06	AC6	SOFTWARE	TRP B:228 , TYR B:249 , GLU B:275	BINDING SITE FOR RESIDUE CHT B 402
07	AC7	SOFTWARE	ASP A:288 , GLY A:289 , TRP B:241 , TYR B:264 , TYR B:269 , MET B:278 , ASP B:298	BINDING SITE FOR RESIDUE CHT B 403
08	AC8	SOFTWARE	ASP A:312 , TRP B:268	BINDING SITE FOR RESIDUE CHT B 404
09	AC9	SOFTWARE	PHE C:199 , TRP C:206 , MET C:237 , GLU C:254	BINDING SITE FOR RESIDUE CHT C 401
10	BC1	SOFTWARE	TRP C:220 , TRP C:228 , TYR C:249 , GLU C:275	BINDING SITE FOR RESIDUE CHT C 402
11	BC2	SOFTWARE	TRP C:241 , TRP C:248 , TYR C:269	BINDING SITE FOR RESIDUE CHT C 403
12	BC3	SOFTWARE	TRP C:261 , TRP C:268 , TYR C:293	BINDING SITE FOR RESIDUE CHT C 404
13	BC4	SOFTWARE	TRP D:220 , TRP D:228 , TYR D:249 , GLU D:275	BINDING SITE FOR RESIDUE CHT D 402
14	BC5	SOFTWARE	TRP D:241 , MET D:278 , ASP D:298 , HOH D:2011 , ASP E:288 , GLY E:289	BINDING SITE FOR RESIDUE CHT D 403
15	BC6	SOFTWARE	ASP C:312 , TRP D:261 , TRP D:268 , TYR D:293	BINDING SITE FOR RESIDUE CHT D 404
16	BC7	SOFTWARE	TRP E:268 , TYR E:293 , ASP F:312	BINDING SITE FOR RESIDUE CHT E 414
17	BC8	SOFTWARE	GLU C:306 , VAL F:188 , TYR F:194 , SER F:212 , GLY F:213	BINDING SITE FOR RESIDUE CHT F 400
18	BC9	SOFTWARE	TRP F:206 , GLU F:254	BINDING SITE FOR RESIDUE CHT F 401
19	CC1	SOFTWARE	TRP F:220 , TRP F:228 , TYR F:249 , GLU F:275	BINDING SITE FOR RESIDUE CHT F 402
20	CC2	SOFTWARE	ASP C:288 , GLY C:289 , TRP F:241 , TRP F:248 , TYR F:269 , MET F:278	BINDING SITE FOR RESIDUE CHT F 403
21	CC3	SOFTWARE	TRP F:268 , TYR F:293	BINDING SITE FOR RESIDUE DDQ F 404
22	CC4	SOFTWARE	HIS B:189 , ASN C:233 , HIS F:189 , GLU F:200	BINDING SITE FOR RESIDUE TRS F1319

(no "SS Bond" information available for 1GVM)

(no "Cis Peptide Bond" information available for 1GVM)

(no "SAP(SNP)/Variant" information available for 1GVM)

Asymmetric Unit (1, 32)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CW	PS51170	Cell wall-binding repeat profile.	ALYS_STRPN	175-194 196-215 217-237 238-257 258-277 280-301	32	B:188-194 F:188-194 A:196-215 B:196-215 C:196-215 D:196-215 E:196-215 F:196-215 A:217-237 B:217-237 C:217-237 D:217-237 E:217-237 F:217-237 A:238-257 B:238-257 C:238-257 D:238-257 E:238-257 F:238-257 A:258-277 B:258-277 C:258-277 D:258-277 E:258-277 F:258-277 A:280-301 B:280-301 C:280-301 D:280-301 E:280-301 F:280-301

Biological Unit 1 (1, 11)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CW	PS51170	Cell wall-binding repeat profile.	ALYS_STRPN	175-194 196-215 217-237 238-257 258-277 280-301	11	B:188-194 - A:196-215 B:196-215 - - - - A:217-237 B:217-237 - - - - A:238-257 B:238-257 - - - - A:258-277 B:258-277 - - - - A:280-301 B:280-301 - - - -

Biological Unit 2 (1, 10)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CW	PS51170	Cell wall-binding repeat profile.	ALYS_STRPN	175-194 196-215 217-237 238-257 258-277 280-301	10	- - - - C:196-215 D:196-215 - - - - C:217-237 D:217-237 - - - - C:238-257 D:238-257 - - - - C:258-277 D:258-277 - - - - C:280-301 D:280-301 - -

Biological Unit 3 (1, 11)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CW	PS51170	Cell wall-binding repeat profile.	ALYS_STRPN	175-194 196-215 217-237 238-257 258-277 280-301	11	- F:188-194 - - - - E:196-215 F:196-215 - - - - E:217-237 F:217-237 - - - - E:238-257 F:238-257 - - - - E:258-277 F:258-277 - - - - E:280-301 F:280-301

(no "Exon" information available for 1GVM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:127
 aligned with ALYS_STRPN | P06653 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:127
                                   201       211       221       231       241       251       261       271       281       291       301       311       
           ALYS_STRPN   192 GSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK 318
               SCOP domains d1gvma_ A: Choline binding domain of autolysin C-LytA                                                                           SCOP domains
               CATH domains 1gvmA00 A:192-318 Cholin Binding                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..eeeee.........eeeee...eeeee........eeeee..eeeee........eeeee..eeeee..........eeeee....eeeee..........eeeee...eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CW -CW  PDB: A:196-215  -CW  PDB: A:217-237   CW  PDB: A:238-257  CW  PDB: A:258-277  --CW  PDB: A:280-301    ----------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvm A 192 GSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADRPEFTVEPDGLITVK 318
                                   201       211       221       231       241       251       261       271       281       291       301       311

Chain B from PDB  Type:PROTEIN  Length:133
 aligned with ALYS_STRPN | P06653 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:161
                                   167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 
           ALYS_STRPN   158 GISREQFKHDIENGLTIETGWQKNDTGYWYVHSDGSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK 318
               SCOP domains d1                            gvmb_ B: Choline binding domain of autolysin C-LytA                                                                                 SCOP domains
               CATH domains 1g                            vmB00 B:186-318 Cholin Binding                                                                                                      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..----------------------------..........eeeee..eeeee.........eeeee...eeeee........eeeee..eeeee........eeeee..eeeee..........eeeee....eeeee..........eeeee...eeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------CW  PDB: B:188-194  -CW  PDB: B:196-215  -CW  PDB: B:217-237   CW  PDB: B:238-257  CW  PDB: B:258-277  --CW  PDB: B:280-301    ----------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvm B 186 GI----------------------------VHSDGSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADRPEFTVEPDGLITVK 318
                             |       -         -         -|      197       207       217       227       237       247       257       267       277       287       297       307       317 
                           187                          188

Chain C from PDB  Type:PROTEIN  Length:127
 aligned with ALYS_STRPN | P06653 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:127
                                   201       211       221       231       241       251       261       271       281       291       301       311       
           ALYS_STRPN   192 GSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK 318
               SCOP domains d1gvmc_ C: Choline binding domain of autolysin C-LytA                                                                           SCOP domains
               CATH domains 1gvmC00 C:192-318 Cholin Binding                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..eeeee.........eeeee...eeeee........eeeee..eeeee........eeeee..eeeee..........eeeee....eeeee..........eeeee...eeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CW -CW  PDB: C:196-215  -CW  PDB: C:217-237   CW  PDB: C:238-257  CW  PDB: C:258-277  --CW  PDB: C:280-301    ----------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvm C 192 GSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADRPEFTVEPDGLITVK 318
                                   201       211       221       231       241       251       261       271       281       291       301       311

Chain D from PDB  Type:PROTEIN  Length:125
 aligned with ALYS_STRPN | P06653 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:125
                                   203       213       223       233       243       253       263       273       283       293       303       313     
           ALYS_STRPN   194 YPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK 318
               SCOP domains d1gvmd_ D: Choline binding domain of autolysin C-LytA                                                                         SCOP domains
               CATH domains 1gvmD00 D:194-318 Cholin Binding                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..eeeee.........eeeee...eeeee........eeeee..eeeee........eeeee..eeeee..........eeeee....eeeee..........eeeee...eeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE C-CW  PDB: D:196-215  -CW  PDB: D:217-237   CW  PDB: D:238-257  CW  PDB: D:258-277  --CW  PDB: D:280-301    ----------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvm D 194 YPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADRPEFTVEPDGLITVK 318
                                   203       213       223       233       243       253       263       273       283       293       303       313

Chain E from PDB  Type:PROTEIN  Length:123
 aligned with ALYS_STRPN | P06653 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:123
                                   205       215       225       235       245       255       265       275       285       295       305       315   
           ALYS_STRPN   196 KDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK 318
               SCOP domains d1gvme_ E: Choline binding domain of autolysin C-LytA                                                                       SCOP domains
               CATH domains 1gvmE00 E:196-318 Cholin Binding                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....eee..........eeeee...eeeee...........hhhhh...............ee..ee...............ee......ee......................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CW  PDB: E:196-215  -CW  PDB: E:217-237   CW  PDB: E:238-257  CW  PDB: E:258-277  --CW  PDB: E:280-301    ----------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvm E 196 KDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADRPEFTVEPDGLITVK 318
                                   205       215       225       235       245       255       265       275       285       295       305       315

Chain F from PDB  Type:PROTEIN  Length:134
 aligned with ALYS_STRPN | P06653 from UniProtKB/Swiss-Prot  Length:318

    Alignment length:149
                                   179       189       199       209       219       229       239       249       259       269       279       289       299       309         
           ALYS_STRPN   170 NGLTIETGWQKNDTGYWYVHSDGSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADKPEFTVEPDGLITVK 318
               SCOP domains d1g               vmf_ F: Choline binding domain of autolysin C-LytA                                                                                  SCOP domains
               CATH domains 1gv               mF00 F:185-318 Cholin Binding                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...---------------..........eeeee..eeeee.........eeeee...eeeee........eeeee..eeeee........eeeee..eeeee..........eeeee....eeeee..........eeeee...eeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----CW  PDB: F:188-194  -CW  PDB: F:196-215  -CW  PDB: F:217-237   CW  PDB: F:238-257  CW  PDB: F:258-277  --CW  PDB: F:280-301    ----------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1gvm F 185 GGI---------------VHSDGSYPKDKFEKINGTWYYFDSSGYMLADRWRKHTDGNWYWFDNSGEMATGWKKIADKWYYFNEEGAMKTGWVKYKDTWYYLDAKEGAMVSNAFIQSADGTGWYYLKPDGTLADRPEFTVEPDGLITVK 318
                              |      -       189       199       209       219       229       239       249       259       269       279       289       299       309         
                            187             188

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: beta-hairpin stack (12)

Superfamily: Cell wall binding repeat (12)

Family: Cell wall binding repeat (12)

Protein domain: Choline binding domain of autolysin C-LytA (4)

Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313] (4)

1a	d1gvma_	A:
1b	d1gvmb_	B:
1c	d1gvmc_	C:
1d	d1gvmd_	D:
1e	d1gvme_	E:
1f	d1gvmf_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Ribbon (789)

Topology: left handed beta-beta-3-solenoid (10)

Homologous Superfamily: Cholin Binding (10)

Pneumococcus (Streptococcus pneumoniae) (1)

1a	1gvmE00	E:196-318
1b	1gvmD00	D:194-318
1c	1gvmA00	A:192-318
1d	1gvmC00	C:192-318
1e	1gvmB00	B:186-318
1f	1gvmF00	F:185-318

(no "Pfam Domain" information available for 1GVM)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (ALYS_STRPN | P06653)

molecular function
	GO:0008745	N-acetylmuramoyl-L-alanine amidase activity	Catalysis of the hydrolysis of the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell-wall glycopeptides.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
	GO:0071555	cell wall organization	A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0030420	establishment of competence for transformation	The process in which a naturally transformable bacterium acquires the ability to take up exogenous DNA. This term should be applied only to naturally transformable bacteria, and should not be used in the context of artificially induced bacterial transformation.
	GO:0009253	peptidoglycan catabolic process	The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls.
	GO:0030435	sporulation resulting in formation of a cellular spore	The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1gvm)

Biological Units
	Complete Structure
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		Biological Unit 3	[ Jena3D ]

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	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1gvm
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	ALYS_STRPN \| P06653
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	3.5.1.28
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	ALYS_STRPN \| P06653
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	ALYS_STRPN \| P06653	:	1h8g 1hcx 2bml 4ivv 4x36 5ctv

1h8g	C-TERMINAL DOMAIN OF THE MAJOR AUTOLYSIN (C-LYTA) FROM STREPTOCOCCUS PNEUMONIAE
1hcx	CHOLINE BINDING DOMAIN OF THE MAJOR AUTOLYSIN FROM STREPTOCOCCUS PNEUMONIAE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 22)

Sites (22, 22)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 32)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File