1EKM - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE AT 2.5 A RESOLUTION OF ZINC-SUBSTITUTED COPPER AMINE OXIDASE OF HANSENULA POLYMORPHA EXPRESSED IN ESCHERICHIA COLI

Authors :   Z. Chen, B. Schwartz, N. K. Williams, R. Li, J. P. Klinman, F. S. Mathews

Date :   09 Mar 00 (Deposition) - 23 Aug 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)
Biol. Unit 3: A,B,C  (2x)

Keywords :   Amine Oxidase, Quinoprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Chen, B. Schwartz, N. K. Williams, R. Li, J. P. Klinman, F. S. Mathews
Crystal Structure At 2. 5 A Resolution Of Zinc-Substituted Copper Amine Oxidase Of Hansenula Polymorpha Expressed In Escherichia Coli.
Biochemistry V. 39 9709 2000
PubMed-ID: 10933787 | Reference-DOI: 10.1021/BI000639F
(for further references see the PDB file header)

Molecule 1 - COPPER AMINE OXIDASE
	Chains	:	A, B, C
	EC Number	:	1.4.3.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Taxid	:	562
	Organism Scientific	:	PICHIA ANGUSTA
	Organism Taxid	:	4905
	Other Details	:	ZINC-SUBSTITUTED

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C
Biological Unit 3 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	ZN	3	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:405 , HIS A:456 , HIS A:458 , HIS A:624	BINDING SITE FOR RESIDUE ZN A 701
2	AC2	SOFTWARE	TYR B:405 , HIS B:456 , HIS B:458 , HIS B:624	BINDING SITE FOR RESIDUE ZN B 701
3	AC3	SOFTWARE	TYR C:405 , HIS C:456 , HIS C:458 , HIS C:624	BINDING SITE FOR RESIDUE ZN C 701

Asymmetric Unit

No.	Residues
1	A:338	-	A:364
2	B:338	-	B:364
3	C:338	-	C:364

Asymmetric Unit

No.	Residues
1	Phe A:310	-	Pro A:311
2	Phe A:631	-	Pro A:632
3	Phe B:310	-	Pro B:311
4	Phe B:631	-	Pro B:632
5	Phe C:310	-	Pro C:311
6	Phe C:631	-	Pro C:632

(no "SAP(SNP)/Variant" information available for 1EKM)

Asymmetric Unit (2, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_AMINE_OXID_1	PS01164	Copper amine oxidase topaquinone signature.	AMO_PICAN	394-407	3	A:394-407 B:394-407 C:394-407
2	COPPER_AMINE_OXID_2	PS01165	Copper amine oxidase copper-binding site signature.	AMO_PICAN	619-632	3	A:619-632 B:619-632 C:619-632

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_AMINE_OXID_1	PS01164	Copper amine oxidase topaquinone signature.	AMO_PICAN	394-407	2	A:394-407 B:394-407 -
2	COPPER_AMINE_OXID_2	PS01165	Copper amine oxidase copper-binding site signature.	AMO_PICAN	619-632	2	A:619-632 B:619-632 -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_AMINE_OXID_1	PS01164	Copper amine oxidase topaquinone signature.	AMO_PICAN	394-407	2	- - C:394-407
2	COPPER_AMINE_OXID_2	PS01165	Copper amine oxidase copper-binding site signature.	AMO_PICAN	619-632	2	- - C:619-632

Biological Unit 3 (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_AMINE_OXID_1	PS01164	Copper amine oxidase topaquinone signature.	AMO_PICAN	394-407	6	A:394-407 B:394-407 C:394-407
2	COPPER_AMINE_OXID_2	PS01165	Copper amine oxidase copper-binding site signature.	AMO_PICAN	619-632	6	A:619-632 B:619-632 C:619-632

(no "Exon" information available for 1EKM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:656
 aligned with AMO_PICAN | P12807 from UniProtKB/Swiss-Prot  Length:692

    Alignment length:656
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666      
            AMO_PICAN    17 APARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV 672
               SCOP domains d1ekma2 A:17-115 Copper amine oxidase, domains 1 and 2                                             d1ekma3 A:116-236 Copper amine oxidase, domains 1 and 2                                                                  d1ekma1 A:237-672 Copper amine oxidase, domain 3                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -1ekmA01 A:18-117  [code=3.10.450.40, no name defined]                                               -----1ekmA02 A:123-231  [code=3.10.450.40, no name defined]                                                       1ekmA03 A:232-670 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                                       -- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhh....eeeeeeeee..hhhhhhhhhhh.......eeeeeeee.....eeeeeee....eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.eeeeeee............eeeeeeee......hhhhh....eeeee....eeeeee................hhhhhhhhh..........eee.......eee..eeee..eeeeeeee...eeeeeeeeeee..eeeeeeeeeeeeeeeee......hhhh.eehhhhhh...................eeeeeeee.....eeeeeeeeeeeeeeeeeeeeee.hhhh...eeeeeeeeeeeeeeeee..eeeeeeeeee....eeeeeeeee....ee..........eeeee..eeee.eeeeeeeeeee.......eeeeeeeee......hhhhh....eeeeeee..hhhhhh...hhhhh.eeeee.............eeeee............hhhhhhhhhhhh.eeeee.....................hhhhhhhh..........eeeeeeeeeee..hhhhh..eeeeeeeeeeeee..............eeehhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O---------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ekm A  17 APARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV 672
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666

Chain B from PDB  Type:PROTEIN  Length:656
 aligned with AMO_PICAN | P12807 from UniProtKB/Swiss-Prot  Length:692

    Alignment length:656
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666      
            AMO_PICAN    17 APARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV 672
               SCOP domains d1ekmb2 B:17-115 Copper amine oxidase, domains 1 and 2                                             d1ekmb3 B:116-236 Copper amine oxidase, domains 1 and 2                                                                  d1ekmb1 B:237-672 Copper amine oxidase, domain 3                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -1ekmB01 B:18-117  [code=3.10.450.40, no name defined]                                               -----1ekmB02 B:123-231  [code=3.10.450.40, no name defined]                                                       1ekmB03 B:232-670 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                                       -- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhh....eeeeeeeee..hhhhhhhhhhh.......eeeeeeee.....eeeeeee....eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.eeeeeee............eeeeeeee......hhhhh....eeeee....eeeeee................hhhhhhhhh..........eee.......eee..eeee..eeeeeeee...eeeeeeeeeee..eeeeeeeeeeeeeeeee......hhhh.eehhhhhh...................eeeeeeee.....eeeeeeeeeeeeeeeeeeeeee.hhhh...eeeeeeeeeeeeeeeee..eeeeeeeeee....eeeeeeeee....ee..........eeeee..eeee.eeeeeeeeeee.......eeeeeeeee......hhhhh....eeeeeee..hhhhhh...hhhhh.eeeee.............eeeee............hhhhhhhhhhhh.eeeee.....................hhhhhhhh..........eeeeeeeeeee..hhhhh..eeeeeeeeeeeee..............eeehhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O---------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ekm B  17 APARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV 672
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666

Chain C from PDB  Type:PROTEIN  Length:656
 aligned with AMO_PICAN | P12807 from UniProtKB/Swiss-Prot  Length:692

    Alignment length:656
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666      
            AMO_PICAN    17 APARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV 672
               SCOP domains d1ekmc2 C:17-115 Copper amine oxidase, domains 1 and 2                                             d1ekmc3 C:116-236 Copper amine oxidase, domains 1 and 2                                                                  d1ekmc1 C:237-672 Copper amine oxidase, domain 3                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -1ekmC01 C:18-117  [code=3.10.450.40, no name defined]                                               -----1ekmC02 C:123-231  [code=3.10.450.40, no name defined]                                                       1ekmC03 C:232-670 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                                       -- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhh....eeeeeeeee..hhhhhhhhhhh.......eeeeeeee.....eeeeeee....eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.eeeeeee............eeeeeeee......hhhhh....eeeee....eeeeee................hhhhhhhhh....................eee..eeee..eeeeeeee...eeeeeeeeeee..eeeeeeeeeeeeeeeee......hhhh.eehhhhhh...................eeeeeeee.....eeeeeeeeeeeeeeeeeeeeee.hhhh...eeeeeeeeeeeeeeeee..eeeeeeeeee....eeeeeeeee....ee..........eeeee..eeee.eeeeeeeeeee.......eeeeeeeee......hhhhh....eeeeeee..hhhhhh...hhhhh.eeeee.............eeeee............hhhhhhhhhhhh.eeeee.....................hhhhhhhh..........eeeeeeeeeee..hhhhh..eeeeeeeeeeeee..............eeehhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O---------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ekm C  17 APARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV 672
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Supersandwich (271)

Superfamily: Amine oxidase catalytic domain (65)

Family: Amine oxidase catalytic domain (65)

Protein domain: Copper amine oxidase, domain 3 (62)

Yeast (Hansenula polymorpha) [TaxId: 4905] (4)

1a	d1ekma1	A:237-672
1b	d1ekmb1	B:237-672
1c	d1ekmc1	C:237-672

Class: Alpha and beta proteins (a+b) (23004)

Fold: Cystatin-like (403)

Superfamily: Amine oxidase N-terminal region (65)

Family: Amine oxidase N-terminal region (65)

Protein domain: Copper amine oxidase, domains 1 and 2 (62)

Yeast (Hansenula polymorpha) [TaxId: 4905] (4)

2a	d1ekma2	A:17-115
2b	d1ekma3	A:116-236
2c	d1ekmb2	B:17-115
2d	d1ekmb3	B:116-236
2e	d1ekmc2	C:17-115
2f	d1ekmc3	C:116-236

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Nuclear Transport Factor 2; Chain: A, (517)

Homologous Superfamily: [code=3.10.450.40, no name defined] (77)

Pichia angusta. Organism_taxid: 4905. (2)

1a	1ekmA01	A:18-117
1b	1ekmA02	A:123-231
1c	1ekmB02	B:123-231
1d	1ekmC02	C:123-231
1e	1ekmB01	B:18-117
1f	1ekmC01	C:18-117

Class: Mainly Beta (13760)

Architecture: Distorted Sandwich (506)

Topology: Beta-galactosidase; Chain A, domain 5 (250)

Homologous Superfamily: Copper amine oxidase, Domain 3 (74)

Pichia angusta. Organism_taxid: 4905. (2)

2a	1ekmA03	A:232-670
2b	1ekmB03	B:232-670
2c	1ekmC03	C:232-670

(no "Pfam Domain" information available for 1EKM)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (AMO_PICAN | P12807)

molecular function
	GO:0052595	aliphatic-amine oxidase activity	Catalysis of the reaction: an aliphatic amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide + H+.
	GO:0052594	aminoacetone:oxygen oxidoreductase(deaminating) activity	Catalysis of the reaction: aminoacetone + H2O + O2 = methylglyoxal + NH3 + hydrogen peroxide + H+.
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0052596	phenethylamine:oxygen oxidoreductase (deaminating) activity	Catalysis of the reaction: phenylethylamine + O2 + H2O = phenylacetaldehyde + NH3 + hydrogen peroxide + H+.
	GO:0008131	primary amine oxidase activity	Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide.
	GO:0048038	quinone binding	Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
	GO:0052593	tryptamine:oxygen oxidoreductase (deaminating) activity	Catalysis of the reaction: tryptamine + H2O + O2 = NH3 + indole acetaldehyde + hydrogen peroxide + H+.
biological process
	GO:0009308	amine metabolic process	The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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	AMO_PICAN \| P12807	:	1a2v 2oov 2oqe 3n9h 3nbb 3nbj 3sx1 3sxx 3t0u 4ev2 4ev5 4kfd 4kfe 4kff

1a2v	COPPER AMINE OXIDASE FROM HANSENULA POLYMORPHA: THE CRYSTAL STRUCTURE DETERMINED AT 2.4 A RESOLUTION REVEALS THE ACTIVE CONFORMATION

Description

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